Wall clock time and date at job start Tue Mar 31 2020 19:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00027 * 2 1 4 4 O 1.20825 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99853 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47006 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.47106 * 55.00233 * 6 5 3 8 8 N 1.46500 * 109.47147 * 295.00405 * 6 5 3 9 9 C 1.34775 * 120.00034 * 155.00363 * 8 6 5 10 10 O 1.21591 * 119.99851 * 359.97438 * 9 8 6 11 11 C 1.47633 * 120.00054 * 179.97438 * 9 8 6 12 12 C 1.40017 * 119.89650 * 359.72030 * 11 9 8 13 13 C 1.36318 * 120.10418 * 179.76051 * 12 11 9 14 14 C 1.40879 * 119.89571 * 0.51769 * 13 12 11 15 15 C 1.41104 * 120.10801 * 179.71926 * 14 13 12 16 16 H 1.08005 * 120.00516 * 204.64443 * 15 14 13 17 17 C 1.40237 * 120.00030 * 24.64134 * 15 14 13 18 18 N 1.30649 * 119.99356 * 17.87988 * 17 15 14 19 19 Si 1.86797 * 120.00126 * 197.87883 * 17 15 14 20 20 H 1.48504 * 109.47191 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46996 * 119.99959 * 19 17 15 22 22 H 1.48498 * 109.47245 * 240.00051 * 19 17 15 23 23 C 1.40897 * 119.79395 * 359.73540 * 14 13 12 24 24 C 1.36316 * 119.89032 * 0.02562 * 23 14 13 25 25 C 1.52999 * 109.46824 * 175.00336 * 6 5 3 26 26 C 1.52992 * 109.47401 * 60.00216 * 25 6 5 27 27 C 1.53001 * 109.46935 * 180.02562 * 25 6 5 28 28 C 1.53003 * 109.47146 * 300.00004 * 25 6 5 29 29 H 1.09000 * 109.47476 * 59.99495 * 1 2 3 30 30 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47064 * 299.99700 * 1 2 3 32 32 H 1.09005 * 109.46906 * 60.00170 * 5 3 2 33 33 H 1.09002 * 109.47241 * 300.00741 * 5 3 2 34 34 H 0.97004 * 119.99538 * 334.99384 * 8 6 5 35 35 H 1.07993 * 119.94501 * 0.02562 * 12 11 9 36 36 H 1.08004 * 120.05056 * 180.23422 * 13 12 11 37 37 H 0.96999 * 119.99048 * 179.97438 * 18 17 15 38 38 H 1.07992 * 120.05212 * 179.97438 * 23 14 13 39 39 H 1.07990 * 119.94718 * 179.97438 * 24 23 14 40 40 H 1.09001 * 109.47551 * 59.99725 * 26 25 6 41 41 H 1.09005 * 109.47221 * 180.02562 * 26 25 6 42 42 H 1.09007 * 109.47083 * 299.99637 * 26 25 6 43 43 H 1.08992 * 109.47610 * 59.99614 * 27 25 6 44 44 H 1.08998 * 109.47106 * 180.02562 * 27 25 6 45 45 H 1.09001 * 109.46505 * 299.99350 * 27 25 6 46 46 H 1.08995 * 109.47499 * 60.00007 * 28 25 6 47 47 H 1.08993 * 109.47300 * 180.02562 * 28 25 6 48 48 H 1.09001 * 109.47031 * 300.00254 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 1 3.5377 3.2574 0.8429 8 7 3.5793 3.3762 -1.2507 9 6 3.3826 4.7086 -1.2982 10 8 3.5540 5.3843 -0.3019 11 6 2.9589 5.3477 -2.5597 12 6 2.7678 4.5683 -3.7071 13 6 2.3720 5.1534 -4.8730 14 6 2.1657 6.5460 -4.9251 15 6 1.7617 7.1571 -6.1311 16 1 1.9780 8.2005 -6.3068 17 6 1.0793 6.4094 -7.1017 18 7 0.5120 5.2786 -6.7756 19 14 0.9815 7.0304 -8.8608 20 1 1.7005 8.3252 -8.9693 21 1 1.6085 6.0388 -9.7713 22 1 -0.4415 7.2204 -9.2402 23 6 2.3644 7.3269 -3.7693 24 6 2.7556 6.7323 -2.6067 25 6 5.5228 2.8235 0.1273 26 6 6.1720 2.1002 -1.0542 27 6 5.9566 4.2907 0.1285 28 6 5.9624 2.1612 1.4347 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7807 0.8908 34 1 3.4423 2.8370 -2.0453 35 1 2.9302 3.5014 -3.6672 36 1 2.2212 4.5508 -5.7566 37 1 0.0398 4.7617 -7.4469 38 1 2.2079 8.3948 -3.8047 39 1 2.9085 7.3300 -1.7204 40 1 5.8589 2.5720 -1.9856 41 1 7.2568 2.1579 -0.9640 42 1 5.8629 1.0549 -1.0546 43 1 5.4941 4.8058 0.9704 44 1 7.0413 4.3488 0.2180 45 1 5.6434 4.7628 -0.8027 46 1 5.6533 1.1160 1.4344 47 1 7.0470 2.2197 1.5248 48 1 5.4998 2.6766 2.2765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889174705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:06 Heat of formation + Delta-G solvation = -119.771226 kcal Electronic energy + Delta-G solvation = -29498.263753 eV Core-core repulsion = 25517.468171 eV Total energy + Delta-G solvation = -3980.795582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.73617 -39.51028 -37.78202 -36.62276 -36.34217 -33.82465 -33.26551 -31.17227 -29.92982 -29.38647 -27.77732 -27.30530 -26.94540 -25.85775 -24.15771 -21.87211 -20.97981 -20.78120 -19.61756 -18.68890 -17.58954 -17.48009 -16.92480 -16.64857 -16.30921 -15.70444 -15.29269 -15.12570 -14.12180 -14.03763 -13.96957 -13.90899 -13.42514 -13.32723 -13.11053 -13.05620 -12.75534 -12.65042 -12.21945 -12.08818 -11.99848 -11.88921 -11.79717 -11.51583 -11.42534 -11.30183 -11.23644 -11.03646 -10.87203 -10.83497 -10.64533 -10.53021 -10.46519 -10.39743 -9.98633 -9.52514 -9.31262 -8.82216 -8.42603 -7.67112 -7.48784 -6.99820 -4.55970 2.23114 2.30166 2.63600 2.92891 2.96621 3.02355 3.07988 3.76605 3.80777 3.94966 4.48113 4.58408 4.69219 4.90725 4.99444 5.02813 5.04232 5.12413 5.14393 5.26856 5.45365 5.53959 5.57042 5.62724 5.75631 5.81669 5.91871 5.99423 6.07307 6.11264 6.14704 6.19598 6.26632 6.37069 6.37475 6.48173 6.74646 6.80918 6.86621 7.02438 7.12779 7.18223 7.47985 7.70356 7.76407 7.84389 7.90457 8.11602 8.32692 8.44280 8.67527 8.79969 9.21113 9.92302 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.003276 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.949864 B = 8543.944340 C = 9775.563499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.481 6.481 5 C -0.127 4.127 6 C 0.172 3.828 7 H 0.094 0.906 8 N -0.728 5.728 9 C 0.581 3.419 10 O -0.568 6.568 11 C -0.279 4.279 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.773 5.773 19 Si 0.912 3.088 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.239 4.239 24 C -0.023 4.023 25 C -0.078 4.078 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.143 4.143 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.392 0.608 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -12.874 8.647 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.291 3.709 4 O -0.366 6.366 5 C -0.165 4.165 6 C 0.066 3.934 7 H 0.112 0.888 8 N -0.380 5.380 9 C 0.376 3.624 10 O -0.450 6.450 11 C -0.284 4.284 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.473 4.473 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.397 5.397 19 Si 0.735 3.265 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.258 4.258 24 C -0.042 4.042 25 C -0.079 4.079 26 C -0.202 4.202 27 C -0.188 4.188 28 C -0.201 4.201 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.227 0.773 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.385 -12.275 9.260 16.292 hybrid contribution -0.562 -0.191 -1.249 1.383 sum 4.823 -12.466 8.012 15.584 Atomic orbital electron populations 1.23237 0.76400 1.03374 1.02800 1.86475 1.23430 1.33823 1.84640 1.23768 0.92183 0.81507 0.73452 1.90798 1.66798 1.35903 1.43057 1.21921 0.87949 1.00001 1.06598 1.20627 0.93265 0.89439 0.90100 0.88818 1.45772 1.71872 1.08564 1.11752 1.18354 0.74777 0.80667 0.88637 1.90626 1.53999 1.63311 1.37076 1.18937 1.22031 0.94355 0.93030 1.20445 0.98001 0.96392 0.93309 1.20956 1.05820 0.95689 0.97305 1.17770 0.86081 0.91997 0.91631 1.19859 1.30021 0.98037 0.99373 0.89769 1.26088 0.92937 0.94151 1.01437 1.69766 1.21869 1.12078 1.35958 0.86193 0.78973 0.80374 0.80915 1.18077 1.19431 1.19719 1.20712 1.13272 0.98626 0.93218 1.20354 0.94192 0.92982 0.96666 1.20959 0.94228 0.97243 0.95498 1.21934 1.00364 0.99514 0.98380 1.21870 0.99162 0.93934 1.03820 1.21952 1.01439 0.99938 0.96785 0.91673 0.88328 0.92023 0.87140 0.86375 0.77298 0.89661 0.86325 0.90400 0.88502 0.88161 0.91988 0.92704 0.92841 0.91888 0.93963 0.91754 0.92615 0.92368 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.31 10.57 -39.25 -0.41 -4.72 16 3 C 0.45 6.03 7.82 36.01 0.28 6.31 16 4 O -0.48 -8.53 15.10 -18.75 -0.28 -8.81 16 5 C -0.13 -1.32 4.63 -27.88 -0.13 -1.45 16 6 C 0.17 2.34 1.09 -67.93 -0.07 2.27 16 7 H 0.09 1.55 7.39 -51.93 -0.38 1.16 16 8 N -0.73 -12.10 3.29 -54.81 -0.18 -12.28 16 9 C 0.58 12.28 6.12 -12.43 -0.08 12.20 16 10 O -0.57 -13.14 13.44 5.29 0.07 -13.06 16 11 C -0.28 -6.48 5.89 -104.73 -0.62 -7.10 16 12 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 13 C -0.18 -4.45 8.63 -39.27 -0.34 -4.79 16 14 C 0.13 3.33 5.58 -106.81 -0.60 2.73 16 15 C -0.45 -11.27 9.04 -37.74 -0.34 -11.61 16 16 H 0.08 2.04 7.91 -52.48 -0.42 1.63 16 17 C 0.07 1.77 5.14 -17.30 -0.09 1.68 16 18 N -0.77 -18.86 10.95 55.56 0.61 -18.25 16 19 Si 0.91 17.52 29.60 -169.99 -5.03 12.48 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.24 -5.91 9.73 -39.27 -0.38 -6.29 16 24 C -0.02 -0.55 9.52 -39.61 -0.38 -0.92 16 25 C -0.08 -0.92 0.62 -154.51 -0.10 -1.01 16 26 C -0.14 -1.50 7.96 37.15 0.30 -1.20 16 27 C -0.13 -1.92 7.00 37.16 0.26 -1.66 16 28 C -0.14 -1.32 8.13 37.16 0.30 -1.01 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.11 0.94 6.71 -51.93 -0.35 0.59 16 33 H 0.12 0.91 6.17 -51.93 -0.32 0.59 16 34 H 0.39 6.08 6.60 -40.82 -0.27 5.81 16 35 H 0.09 1.66 6.37 -52.49 -0.33 1.32 16 36 H 0.12 3.00 6.16 -52.48 -0.32 2.67 16 37 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 38 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 40 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.44 6.54 -51.93 -0.34 0.10 16 43 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.14 5.77 -51.93 -0.30 0.84 16 46 H 0.05 0.40 6.32 -51.93 -0.33 0.07 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -30.67 383.25 -7.80 -38.47 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.06 Total: 12.61 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.29 Total: -12.22 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.43 Total: -30.53 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.63 Total: -26.59 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.67 -7.80 -38.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889174705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.299 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds