Wall clock time and date at job start Tue Mar 31 2020 19:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00027 * 2 1 4 4 O 1.20825 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99853 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47006 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.47106 * 55.00233 * 6 5 3 8 8 N 1.46500 * 109.47147 * 295.00405 * 6 5 3 9 9 C 1.34775 * 120.00034 * 155.00363 * 8 6 5 10 10 O 1.21591 * 119.99851 * 359.97438 * 9 8 6 11 11 C 1.47633 * 120.00054 * 179.97438 * 9 8 6 12 12 C 1.40017 * 119.89650 * 359.72030 * 11 9 8 13 13 C 1.36318 * 120.10418 * 179.76051 * 12 11 9 14 14 C 1.40879 * 119.89571 * 0.51769 * 13 12 11 15 15 C 1.41104 * 120.10801 * 179.71926 * 14 13 12 16 16 H 1.08005 * 120.00516 * 204.64443 * 15 14 13 17 17 C 1.40237 * 120.00030 * 24.64134 * 15 14 13 18 18 N 1.30649 * 119.99356 * 17.87988 * 17 15 14 19 19 Si 1.86797 * 120.00126 * 197.87883 * 17 15 14 20 20 H 1.48504 * 109.47191 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46996 * 119.99959 * 19 17 15 22 22 H 1.48498 * 109.47245 * 240.00051 * 19 17 15 23 23 C 1.40897 * 119.79395 * 359.73540 * 14 13 12 24 24 C 1.36316 * 119.89032 * 0.02562 * 23 14 13 25 25 C 1.52999 * 109.46824 * 175.00336 * 6 5 3 26 26 C 1.52992 * 109.47401 * 60.00216 * 25 6 5 27 27 C 1.53001 * 109.46935 * 180.02562 * 25 6 5 28 28 C 1.53003 * 109.47146 * 300.00004 * 25 6 5 29 29 H 1.09000 * 109.47476 * 59.99495 * 1 2 3 30 30 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47064 * 299.99700 * 1 2 3 32 32 H 1.09005 * 109.46906 * 60.00170 * 5 3 2 33 33 H 1.09002 * 109.47241 * 300.00741 * 5 3 2 34 34 H 0.97004 * 119.99538 * 334.99384 * 8 6 5 35 35 H 1.07993 * 119.94501 * 0.02562 * 12 11 9 36 36 H 1.08004 * 120.05056 * 180.23422 * 13 12 11 37 37 H 0.96999 * 119.99048 * 179.97438 * 18 17 15 38 38 H 1.07992 * 120.05212 * 179.97438 * 23 14 13 39 39 H 1.07990 * 119.94718 * 179.97438 * 24 23 14 40 40 H 1.09001 * 109.47551 * 59.99725 * 26 25 6 41 41 H 1.09005 * 109.47221 * 180.02562 * 26 25 6 42 42 H 1.09007 * 109.47083 * 299.99637 * 26 25 6 43 43 H 1.08992 * 109.47610 * 59.99614 * 27 25 6 44 44 H 1.08998 * 109.47106 * 180.02562 * 27 25 6 45 45 H 1.09001 * 109.46505 * 299.99350 * 27 25 6 46 46 H 1.08995 * 109.47499 * 60.00007 * 28 25 6 47 47 H 1.08993 * 109.47300 * 180.02562 * 28 25 6 48 48 H 1.09001 * 109.47031 * 300.00254 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 1 3.5377 3.2574 0.8429 8 7 3.5793 3.3762 -1.2507 9 6 3.3826 4.7086 -1.2982 10 8 3.5540 5.3843 -0.3019 11 6 2.9589 5.3477 -2.5597 12 6 2.7678 4.5683 -3.7071 13 6 2.3720 5.1534 -4.8730 14 6 2.1657 6.5460 -4.9251 15 6 1.7617 7.1571 -6.1311 16 1 1.9780 8.2005 -6.3068 17 6 1.0793 6.4094 -7.1017 18 7 0.5120 5.2786 -6.7756 19 14 0.9815 7.0304 -8.8608 20 1 1.7005 8.3252 -8.9693 21 1 1.6085 6.0388 -9.7713 22 1 -0.4415 7.2204 -9.2402 23 6 2.3644 7.3269 -3.7693 24 6 2.7556 6.7323 -2.6067 25 6 5.5228 2.8235 0.1273 26 6 6.1720 2.1002 -1.0542 27 6 5.9566 4.2907 0.1285 28 6 5.9624 2.1612 1.4347 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7807 0.8908 34 1 3.4423 2.8370 -2.0453 35 1 2.9302 3.5014 -3.6672 36 1 2.2212 4.5508 -5.7566 37 1 0.0398 4.7617 -7.4469 38 1 2.2079 8.3948 -3.8047 39 1 2.9085 7.3300 -1.7204 40 1 5.8589 2.5720 -1.9856 41 1 7.2568 2.1579 -0.9640 42 1 5.8629 1.0549 -1.0546 43 1 5.4941 4.8058 0.9704 44 1 7.0413 4.3488 0.2180 45 1 5.6434 4.7628 -0.8027 46 1 5.6533 1.1160 1.4344 47 1 7.0470 2.2197 1.5248 48 1 5.4998 2.6766 2.2765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889174705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:04 Heat of formation + Delta-G solvation = -136.565229 kcal Electronic energy + Delta-G solvation = -29498.991996 eV Core-core repulsion = 25517.468171 eV Total energy + Delta-G solvation = -3981.523825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.86245 -40.86316 -39.36564 -38.16078 -37.42353 -35.66002 -34.61667 -32.46161 -31.57674 -31.27591 -28.70409 -28.14901 -28.09272 -27.41505 -25.36867 -23.57978 -22.78259 -21.87065 -21.28015 -19.78318 -19.36091 -18.62512 -18.32279 -17.73002 -17.50479 -17.24124 -16.77718 -16.32193 -15.76245 -15.52641 -15.12927 -14.97071 -14.92906 -14.61457 -14.50234 -14.26479 -14.05610 -13.91894 -13.71213 -13.60651 -13.21338 -13.03826 -12.92562 -12.85003 -12.73830 -12.67436 -12.54437 -12.35323 -12.23359 -12.03035 -11.79989 -11.75744 -11.59980 -11.52477 -11.41477 -11.35766 -11.12227 -10.54894 -9.85712 -9.57582 -9.38957 -8.79422 -6.48314 0.47821 1.13610 1.20754 1.37833 1.41589 1.54521 1.73720 2.15383 2.21333 2.45082 2.82041 3.49973 3.66400 3.72691 3.95074 4.07576 4.19565 4.24403 4.29043 4.31631 4.32150 4.33346 4.44017 4.48122 4.65687 4.71015 4.79983 4.85457 4.90052 4.95551 5.01025 5.02848 5.12553 5.13320 5.16763 5.24024 5.29829 5.36012 5.41658 5.54109 5.56958 5.57914 5.74229 5.83130 5.94783 5.99031 6.22423 6.53544 6.74797 6.76715 6.78344 6.89366 7.57755 8.16278 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.003276 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.949864 B = 8543.944340 C = 9775.563499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.450 3.550 4 O -0.535 6.535 5 C -0.118 4.118 6 C 0.168 3.832 7 H 0.061 0.939 8 N -0.712 5.712 9 C 0.580 3.420 10 O -0.595 6.595 11 C -0.290 4.290 12 C -0.054 4.054 13 C -0.197 4.197 14 C 0.101 3.899 15 C -0.477 4.477 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.801 5.801 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.035 4.035 25 C -0.072 4.072 26 C -0.143 4.143 27 C -0.127 4.127 28 C -0.140 4.140 29 H 0.050 0.950 30 H 0.136 0.864 31 H 0.057 0.943 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.399 0.601 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.296 0.704 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 -16.103 8.250 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.294 3.706 4 O -0.423 6.423 5 C -0.155 4.155 6 C 0.063 3.937 7 H 0.079 0.921 8 N -0.362 5.362 9 C 0.373 3.627 10 O -0.479 6.479 11 C -0.294 4.294 12 C -0.073 4.073 13 C -0.216 4.216 14 C 0.098 3.902 15 C -0.504 4.504 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.425 5.425 19 Si 0.808 3.192 20 H -0.181 1.181 21 H -0.183 1.183 22 H -0.189 1.189 23 C -0.273 4.273 24 C -0.054 4.054 25 C -0.073 4.073 26 C -0.200 4.200 27 C -0.185 4.185 28 C -0.197 4.197 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.235 0.765 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.438 -15.569 8.884 19.046 hybrid contribution -0.911 0.761 -1.008 1.557 sum 5.527 -14.808 7.876 17.660 Atomic orbital electron populations 1.23466 0.75458 1.05530 1.01928 1.86477 1.24369 1.32755 1.83994 1.24370 0.93287 0.81127 0.71783 1.90798 1.68124 1.37654 1.45769 1.22015 0.85939 0.97675 1.09857 1.20804 0.94567 0.91083 0.87202 0.92123 1.45613 1.70264 1.06998 1.13314 1.18102 0.74889 0.82213 0.87461 1.90610 1.55276 1.64378 1.37617 1.19299 1.21372 0.94346 0.94412 1.20677 0.96495 0.97938 0.92227 1.20990 1.07186 0.95490 0.97929 1.18113 0.86903 0.92852 0.92318 1.20115 1.31406 0.98546 1.00339 0.89813 1.26939 0.91740 0.94086 1.05292 1.69784 1.21877 1.13008 1.37790 0.85059 0.79221 0.79787 0.75126 1.18066 1.18277 1.18865 1.20846 1.14021 0.99039 0.93410 1.20490 0.94588 0.93874 0.96495 1.20918 0.92568 0.95644 0.98167 1.21934 1.00948 1.00809 0.96285 1.21809 1.00006 0.95921 1.00753 1.21940 1.02188 1.01189 0.94407 0.93120 0.84633 0.92437 0.84032 0.82508 0.76470 0.86431 0.86872 0.89259 0.88001 0.88239 0.94005 0.91620 0.89640 0.94380 0.92237 0.95309 0.89535 0.91154 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.36 -7.54 10.57 -51.39 -0.54 -8.08 16 3 C 0.45 11.25 7.82 71.24 0.56 11.81 16 4 O -0.53 -19.02 15.10 21.97 0.33 -18.68 16 5 C -0.12 -2.03 4.63 29.85 0.14 -1.89 16 6 C 0.17 4.38 1.09 44.99 0.05 4.43 16 7 H 0.06 2.03 7.39 -2.39 -0.02 2.01 16 8 N -0.71 -23.47 3.29 -445.60 -1.47 -24.93 16 9 C 0.58 25.30 6.12 86.72 0.53 25.83 16 10 O -0.59 -28.83 13.44 -4.00 -0.05 -28.89 16 11 C -0.29 -13.92 5.89 -19.93 -0.12 -14.03 16 12 C -0.05 -2.50 9.47 22.25 0.21 -2.29 16 13 C -0.20 -10.07 8.63 22.47 0.19 -9.88 16 14 C 0.10 5.45 5.58 -21.28 -0.12 5.34 16 15 C -0.48 -24.84 9.04 23.46 0.21 -24.63 16 16 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 17 C 0.04 1.81 5.14 85.35 0.44 2.25 16 18 N -0.80 -39.31 10.95 21.87 0.24 -39.07 16 19 Si 0.99 35.57 29.60 68.60 2.03 37.60 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 23 C -0.25 -13.19 9.73 22.47 0.22 -12.97 16 24 C -0.04 -1.79 9.52 22.25 0.21 -1.57 16 25 C -0.07 -1.54 0.62 -52.18 -0.03 -1.57 16 26 C -0.14 -2.46 7.96 71.98 0.57 -1.89 16 27 C -0.13 -3.76 7.00 71.98 0.50 -3.26 16 28 C -0.14 -2.07 8.13 71.98 0.59 -1.49 16 29 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.14 1.66 6.71 -2.38 -0.02 1.64 16 33 H 0.16 1.57 6.17 -2.39 -0.01 1.56 16 34 H 0.40 11.89 6.60 -92.70 -0.61 11.27 16 35 H 0.12 4.49 6.37 -2.91 -0.02 4.47 16 36 H 0.11 5.84 6.16 -2.91 -0.02 5.83 16 37 H 0.30 12.85 8.29 -92.71 -0.77 12.08 16 38 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 39 H 0.10 4.94 7.63 -2.92 -0.02 4.92 16 40 H 0.04 0.90 7.60 -2.39 -0.02 0.88 16 41 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.08 0.94 6.54 -2.38 -0.02 0.93 16 43 H 0.04 1.28 7.53 -2.39 -0.02 1.26 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.03 1.03 5.77 -2.39 -0.01 1.02 16 46 H 0.09 0.77 6.32 -2.39 -0.02 0.75 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.90 383.25 6.26 -65.64 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: 0.37 Total: 40.51 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 5.35 Total: -24.10 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.23 Total: -64.00 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.26 Total: -55.65 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -71.90 6.26 -65.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889174705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.925 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds