Wall clock time and date at job start Tue Mar 31 2020 19:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34237 * 116.99850 * 2 1 4 4 O 1.20831 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99886 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46889 * 180.02562 * 5 3 2 7 7 H 1.09009 * 109.47218 * 304.99546 * 6 5 3 8 8 N 1.46497 * 109.47658 * 64.99821 * 6 5 3 9 9 C 1.34774 * 120.00049 * 205.00048 * 8 6 5 10 10 O 1.21542 * 120.00139 * 359.97438 * 9 8 6 11 11 C 1.47888 * 119.99986 * 179.97438 * 9 8 6 12 12 C 1.39919 * 120.02232 * 359.72987 * 11 9 8 13 13 C 1.38331 * 120.35677 * 179.71555 * 12 11 9 14 14 C 1.37747 * 120.41247 * 0.55691 * 13 12 11 15 15 C 1.40749 * 120.04059 * 359.72275 * 14 13 12 16 16 C 1.41436 * 120.18193 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99907 * 24.43766 * 16 15 14 18 18 C 1.39940 * 120.00267 * 204.42641 * 16 15 14 19 19 N 1.30831 * 119.99721 * 17.89855 * 18 16 15 20 20 Si 1.86802 * 120.00302 * 197.88911 * 18 16 15 21 21 H 1.48502 * 109.46766 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46813 * 120.00292 * 20 18 16 23 23 H 1.48500 * 109.47171 * 240.00715 * 20 18 16 24 24 C 1.38993 * 120.02641 * 180.02562 * 11 9 8 25 25 C 1.53009 * 109.47115 * 184.99885 * 6 5 3 26 26 C 1.53005 * 109.46739 * 59.99614 * 25 6 5 27 27 C 1.52997 * 109.46782 * 299.99647 * 25 6 5 28 28 C 1.52997 * 109.47083 * 179.97438 * 25 6 5 29 29 H 1.09000 * 109.47435 * 59.99570 * 1 2 3 30 30 H 1.08992 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46605 * 299.99539 * 1 2 3 32 32 H 1.08997 * 109.47122 * 59.99934 * 5 3 2 33 33 H 1.09007 * 109.47047 * 300.00025 * 5 3 2 34 34 H 0.96996 * 119.99854 * 24.99863 * 8 6 5 35 35 H 1.08000 * 119.82499 * 359.97326 * 12 11 9 36 36 H 1.08000 * 119.79448 * 180.25899 * 13 12 11 37 37 H 1.08002 * 119.98294 * 179.74550 * 14 13 12 38 38 H 0.96994 * 119.99844 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.20384 * 359.97438 * 24 11 9 40 40 H 1.08995 * 109.47251 * 300.00097 * 26 25 6 41 41 H 1.09006 * 109.46533 * 180.02562 * 26 25 6 42 42 H 1.09000 * 109.46940 * 60.00617 * 26 25 6 43 43 H 1.09000 * 109.46756 * 179.97438 * 27 25 6 44 44 H 1.08992 * 109.47075 * 299.99769 * 27 25 6 45 45 H 1.09007 * 109.46906 * 60.00533 * 27 25 6 46 46 H 1.08997 * 109.47254 * 300.00204 * 28 25 6 47 47 H 1.09000 * 109.47205 * 60.00215 * 28 25 6 48 48 H 1.09001 * 109.46680 * 179.97438 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 0.0002 7 1 3.5375 3.2583 -0.8412 8 7 3.5793 3.3752 1.2525 9 6 3.3825 4.7076 1.3011 10 8 3.5545 5.3841 0.3061 11 6 2.9571 5.3467 2.5652 12 6 2.7534 4.5677 3.7095 13 6 2.3613 5.1589 4.8970 14 6 2.1557 6.5193 4.9640 15 6 2.3499 7.3184 3.8218 16 6 2.1402 8.7156 3.8874 17 1 2.2214 9.2300 4.8336 18 6 1.8277 9.4316 2.7264 19 7 1.3882 8.8012 1.6676 20 14 2.0379 11.2873 2.6884 21 1 2.5462 11.7549 4.0030 22 1 3.0070 11.6540 1.6246 23 1 0.7282 11.9282 2.4072 24 6 2.7535 6.7207 2.6158 25 6 5.5227 2.8240 -0.1261 26 6 5.9622 2.1628 -1.4341 27 6 6.1720 2.0996 1.0549 28 6 5.9564 4.2912 -0.1260 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.4423 2.8355 2.0467 35 1 2.9072 3.4995 3.6665 36 1 2.2107 4.5495 5.7758 37 1 1.8455 6.9731 5.8937 38 1 1.1712 9.2975 0.8629 39 1 2.9052 7.3252 1.7339 40 1 5.6532 1.1175 -1.4346 41 1 7.0470 2.2206 -1.5238 42 1 5.4996 2.6789 -2.2754 43 1 7.2567 2.1575 0.9646 44 1 5.8589 2.5706 1.9865 45 1 5.8630 1.0543 1.0543 46 1 5.4938 4.8069 -0.9675 47 1 5.6433 4.7625 0.8056 48 1 7.0412 4.3493 -0.2155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889179391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:19 Heat of formation + Delta-G solvation = -115.565951 kcal Electronic energy + Delta-G solvation = -29772.448633 eV Core-core repulsion = 25791.835405 eV Total energy + Delta-G solvation = -3980.613228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77310 -39.57474 -37.76066 -36.59086 -36.35664 -33.77530 -33.22892 -31.18782 -29.87744 -29.36927 -27.78608 -27.31924 -26.84998 -25.32217 -24.43754 -22.23791 -20.97807 -20.81212 -19.50943 -18.71701 -17.70641 -17.56692 -16.74234 -16.63292 -15.96166 -15.64709 -15.17607 -14.99668 -14.58047 -14.08652 -14.03601 -13.85724 -13.43339 -13.34999 -13.13531 -13.06249 -12.75170 -12.58431 -12.43224 -12.17288 -12.05828 -11.85187 -11.60659 -11.52746 -11.41607 -11.12977 -11.05833 -10.99305 -10.86139 -10.69873 -10.60115 -10.48497 -10.42614 -10.42201 -9.93476 -9.64010 -9.17794 -8.87258 -8.48223 -7.56602 -7.46684 -6.75541 -4.36923 2.20616 2.30105 2.60707 2.85066 3.10391 3.15325 3.18332 3.71051 3.94148 3.97593 4.46290 4.59701 4.71376 4.88681 4.97317 5.00292 5.01433 5.09851 5.12310 5.24229 5.42523 5.51246 5.55541 5.66268 5.74463 5.78960 5.81310 5.99392 6.04855 6.08987 6.12747 6.15194 6.25825 6.32097 6.35132 6.45863 6.74070 6.77377 6.97644 7.03964 7.08159 7.26264 7.43922 7.73905 7.75634 7.82126 7.97993 8.17099 8.25521 8.55994 8.85050 8.88818 9.09513 10.18948 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.003528 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.992408 B = 7934.049707 C = 8637.777268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.449 3.551 4 O -0.480 6.480 5 C -0.126 4.126 6 C 0.170 3.830 7 H 0.096 0.904 8 N -0.724 5.724 9 C 0.572 3.428 10 O -0.540 6.540 11 C -0.125 4.125 12 C -0.217 4.217 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.782 5.782 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.092 4.092 25 C -0.078 4.078 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.394 0.606 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.284 0.716 39 H 0.134 0.866 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 -16.970 -4.545 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.290 3.710 4 O -0.364 6.364 5 C -0.164 4.164 6 C 0.064 3.936 7 H 0.114 0.886 8 N -0.376 5.376 9 C 0.363 3.637 10 O -0.417 6.417 11 C -0.128 4.128 12 C -0.237 4.237 13 C -0.117 4.117 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.406 5.406 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.113 4.113 25 C -0.079 4.079 26 C -0.201 4.201 27 C -0.202 4.202 28 C -0.190 4.190 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.229 0.771 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.990 -16.114 -5.518 17.748 hybrid contribution -0.405 0.442 0.355 0.696 sum 4.584 -15.672 -5.163 17.126 Atomic orbital electron populations 1.23237 0.76406 1.03354 1.02817 1.86478 1.23421 1.33809 1.84672 1.23775 0.92186 0.81525 0.73523 1.90818 1.66773 1.35876 1.42950 1.21909 0.87961 0.99869 1.06660 1.20678 0.93424 0.89564 0.89951 0.88647 1.45809 1.71411 1.08434 1.11971 1.18609 0.75198 0.80932 0.88928 1.90685 1.51313 1.63114 1.36617 1.19500 1.06413 0.95107 0.91803 1.20311 1.13252 0.96548 0.93608 1.20414 1.00450 0.94865 0.95951 1.21076 1.10247 0.93034 0.98986 1.17602 0.88671 0.93334 0.90761 1.19609 1.42047 0.92335 0.94991 0.90125 1.25960 0.92352 1.01346 0.94899 1.69811 1.28926 1.38585 1.03287 0.86261 0.78825 0.82092 0.79586 1.18357 1.19568 1.19949 1.21631 0.98249 0.91829 0.99553 1.20960 0.94052 0.97296 0.95590 1.21955 1.01505 0.99916 0.96756 1.21934 1.00440 0.99472 0.98335 1.21888 0.99380 0.93858 1.03849 0.91970 0.88326 0.91734 0.86272 0.87116 0.77113 0.89560 0.89084 0.88740 0.90526 0.84850 0.92603 0.92304 0.92327 0.92639 0.92019 0.92822 0.91752 0.91868 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.37 -4.17 10.57 -39.28 -0.41 -4.58 16 3 C 0.45 5.90 7.82 36.00 0.28 6.18 16 4 O -0.48 -8.49 15.10 -18.75 -0.28 -8.77 16 5 C -0.13 -1.28 4.63 -27.89 -0.13 -1.41 16 6 C 0.17 2.32 1.09 -67.93 -0.07 2.25 16 7 H 0.10 1.60 7.39 -51.92 -0.38 1.22 16 8 N -0.72 -12.02 3.29 -54.73 -0.18 -12.20 16 9 C 0.57 12.54 6.13 -12.31 -0.08 12.46 16 10 O -0.54 -13.26 13.45 5.33 0.07 -13.19 16 11 C -0.12 -3.01 5.87 -105.04 -0.62 -3.63 16 12 C -0.22 -4.69 9.55 -38.92 -0.37 -5.06 16 13 C -0.10 -2.16 10.01 -39.73 -0.40 -2.55 16 14 C -0.21 -5.19 9.78 -38.81 -0.38 -5.57 16 15 C 0.10 2.67 5.57 -106.87 -0.60 2.07 16 16 C -0.46 -12.34 9.05 -37.73 -0.34 -12.68 16 17 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 18 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 19 N -0.78 -21.23 10.96 55.55 0.61 -20.62 16 20 Si 0.91 19.12 29.60 -169.99 -5.03 14.09 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.09 -2.51 8.24 -38.44 -0.32 -2.83 16 25 C -0.08 -0.92 0.62 -154.50 -0.10 -1.01 16 26 C -0.14 -1.33 8.13 37.16 0.30 -1.03 16 27 C -0.14 -1.46 7.96 37.16 0.30 -1.17 16 28 C -0.13 -2.00 7.00 37.16 0.26 -1.74 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.12 0.90 6.17 -51.93 -0.32 0.57 16 33 H 0.11 0.89 6.71 -51.92 -0.35 0.54 16 34 H 0.39 5.89 6.62 -40.82 -0.27 5.62 16 35 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 39 H 0.13 3.92 5.74 -52.49 -0.30 3.62 16 40 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 45 H 0.05 0.42 6.54 -51.92 -0.34 0.08 16 46 H 0.06 1.09 7.53 -51.93 -0.39 0.70 16 47 H 0.06 1.15 5.77 -51.93 -0.30 0.85 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -32.39 383.50 -7.79 -40.18 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.07 Total: 11.84 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.28 Total: -12.52 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.43 Total: -32.82 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.63 Total: -26.54 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.39 -7.79 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889179391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.387 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds