Wall clock time and date at job start Tue Mar 31 2020 19:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34237 * 116.99850 * 2 1 4 4 O 1.20831 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99886 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46889 * 180.02562 * 5 3 2 7 7 H 1.09009 * 109.47218 * 304.99546 * 6 5 3 8 8 N 1.46497 * 109.47658 * 64.99821 * 6 5 3 9 9 C 1.34774 * 120.00049 * 205.00048 * 8 6 5 10 10 O 1.21542 * 120.00139 * 359.97438 * 9 8 6 11 11 C 1.47888 * 119.99986 * 179.97438 * 9 8 6 12 12 C 1.39919 * 120.02232 * 359.72987 * 11 9 8 13 13 C 1.38331 * 120.35677 * 179.71555 * 12 11 9 14 14 C 1.37747 * 120.41247 * 0.55691 * 13 12 11 15 15 C 1.40749 * 120.04059 * 359.72275 * 14 13 12 16 16 C 1.41436 * 120.18193 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99907 * 24.43766 * 16 15 14 18 18 C 1.39940 * 120.00267 * 204.42641 * 16 15 14 19 19 N 1.30831 * 119.99721 * 17.89855 * 18 16 15 20 20 Si 1.86802 * 120.00302 * 197.88911 * 18 16 15 21 21 H 1.48502 * 109.46766 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46813 * 120.00292 * 20 18 16 23 23 H 1.48500 * 109.47171 * 240.00715 * 20 18 16 24 24 C 1.38993 * 120.02641 * 180.02562 * 11 9 8 25 25 C 1.53009 * 109.47115 * 184.99885 * 6 5 3 26 26 C 1.53005 * 109.46739 * 59.99614 * 25 6 5 27 27 C 1.52997 * 109.46782 * 299.99647 * 25 6 5 28 28 C 1.52997 * 109.47083 * 179.97438 * 25 6 5 29 29 H 1.09000 * 109.47435 * 59.99570 * 1 2 3 30 30 H 1.08992 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46605 * 299.99539 * 1 2 3 32 32 H 1.08997 * 109.47122 * 59.99934 * 5 3 2 33 33 H 1.09007 * 109.47047 * 300.00025 * 5 3 2 34 34 H 0.96996 * 119.99854 * 24.99863 * 8 6 5 35 35 H 1.08000 * 119.82499 * 359.97326 * 12 11 9 36 36 H 1.08000 * 119.79448 * 180.25899 * 13 12 11 37 37 H 1.08002 * 119.98294 * 179.74550 * 14 13 12 38 38 H 0.96994 * 119.99844 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.20384 * 359.97438 * 24 11 9 40 40 H 1.08995 * 109.47251 * 300.00097 * 26 25 6 41 41 H 1.09006 * 109.46533 * 180.02562 * 26 25 6 42 42 H 1.09000 * 109.46940 * 60.00617 * 26 25 6 43 43 H 1.09000 * 109.46756 * 179.97438 * 27 25 6 44 44 H 1.08992 * 109.47075 * 299.99769 * 27 25 6 45 45 H 1.09007 * 109.46906 * 60.00533 * 27 25 6 46 46 H 1.08997 * 109.47254 * 300.00204 * 28 25 6 47 47 H 1.09000 * 109.47205 * 60.00215 * 28 25 6 48 48 H 1.09001 * 109.46680 * 179.97438 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 0.0002 7 1 3.5375 3.2583 -0.8412 8 7 3.5793 3.3752 1.2525 9 6 3.3825 4.7076 1.3011 10 8 3.5545 5.3841 0.3061 11 6 2.9571 5.3467 2.5652 12 6 2.7534 4.5677 3.7095 13 6 2.3613 5.1589 4.8970 14 6 2.1557 6.5193 4.9640 15 6 2.3499 7.3184 3.8218 16 6 2.1402 8.7156 3.8874 17 1 2.2214 9.2300 4.8336 18 6 1.8277 9.4316 2.7264 19 7 1.3882 8.8012 1.6676 20 14 2.0379 11.2873 2.6884 21 1 2.5462 11.7549 4.0030 22 1 3.0070 11.6540 1.6246 23 1 0.7282 11.9282 2.4072 24 6 2.7535 6.7207 2.6158 25 6 5.5227 2.8240 -0.1261 26 6 5.9622 2.1628 -1.4341 27 6 6.1720 2.0996 1.0549 28 6 5.9564 4.2912 -0.1260 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.4423 2.8355 2.0467 35 1 2.9072 3.4995 3.6665 36 1 2.2107 4.5495 5.7758 37 1 1.8455 6.9731 5.8937 38 1 1.1712 9.2975 0.8629 39 1 2.9052 7.3252 1.7339 40 1 5.6532 1.1175 -1.4346 41 1 7.0470 2.2206 -1.5238 42 1 5.4996 2.6789 -2.2754 43 1 7.2567 2.1575 0.9646 44 1 5.8589 2.5706 1.9865 45 1 5.8630 1.0543 1.0543 46 1 5.4938 4.8069 -0.9675 47 1 5.6433 4.7625 0.8056 48 1 7.0412 4.3493 -0.2155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889179391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:18 Heat of formation + Delta-G solvation = -135.020994 kcal Electronic energy + Delta-G solvation = -29773.292267 eV Core-core repulsion = 25791.835405 eV Total energy + Delta-G solvation = -3981.456862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.90940 -40.93394 -39.31007 -38.18224 -37.43135 -35.65652 -34.64831 -32.48163 -31.54851 -31.24518 -28.67339 -28.12231 -27.90828 -27.20667 -25.68270 -23.87105 -22.79418 -21.88664 -21.21109 -19.85479 -19.43126 -18.59699 -17.97441 -17.72279 -17.47984 -17.09225 -16.70741 -16.45260 -16.30794 -15.45470 -15.13864 -15.00241 -14.94665 -14.67006 -14.52416 -14.28629 -14.19478 -14.05883 -13.65131 -13.49692 -13.08549 -13.00543 -12.93458 -12.81551 -12.75479 -12.61614 -12.52378 -12.25732 -12.18198 -12.08112 -11.85663 -11.79868 -11.62859 -11.54516 -11.50684 -11.40730 -11.09606 -10.64152 -9.94074 -9.46185 -9.38482 -8.67882 -6.39845 0.42640 0.99548 1.20379 1.33772 1.44931 1.50820 1.72910 2.15479 2.19684 2.32041 2.80036 3.46899 3.65254 3.72047 3.92031 4.02117 4.14312 4.18566 4.24427 4.31128 4.32424 4.40346 4.47103 4.57690 4.61877 4.70990 4.76735 4.82315 4.87191 4.94959 4.98593 5.07353 5.11224 5.11755 5.19363 5.22117 5.30641 5.34693 5.40384 5.48879 5.52115 5.55243 5.66884 5.86506 5.92398 6.04611 6.27863 6.52285 6.72744 6.76333 6.86550 6.94346 7.44785 8.28851 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.003528 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.992408 B = 7934.049707 C = 8637.777268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.450 3.550 4 O -0.537 6.537 5 C -0.116 4.116 6 C 0.166 3.834 7 H 0.056 0.944 8 N -0.701 5.701 9 C 0.568 3.432 10 O -0.579 6.579 11 C -0.138 4.138 12 C -0.200 4.200 13 C -0.096 4.096 14 C -0.220 4.220 15 C 0.068 3.932 16 C -0.498 4.498 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.827 5.827 20 Si 0.983 3.017 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.264 1.264 24 C -0.132 4.132 25 C -0.071 4.071 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.137 0.863 31 H 0.053 0.947 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.285 0.715 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.032 0.968 47 H 0.025 0.975 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 -20.981 -3.477 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.295 3.705 4 O -0.426 6.426 5 C -0.153 4.153 6 C 0.061 3.939 7 H 0.074 0.926 8 N -0.352 5.352 9 C 0.358 3.642 10 O -0.460 6.460 11 C -0.141 4.141 12 C -0.219 4.219 13 C -0.113 4.113 14 C -0.240 4.240 15 C 0.065 3.935 16 C -0.527 4.527 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.453 5.453 20 Si 0.803 3.197 21 H -0.172 1.172 22 H -0.195 1.195 23 H -0.188 1.188 24 C -0.153 4.153 25 C -0.072 4.072 26 C -0.198 4.198 27 C -0.199 4.199 28 C -0.187 4.187 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.242 0.758 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.044 0.956 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.221 -20.212 -4.424 21.605 hybrid contribution -0.790 1.462 0.043 1.662 sum 5.430 -18.750 -4.381 20.006 Atomic orbital electron populations 1.23473 0.75444 1.05558 1.01930 1.86480 1.24358 1.32597 1.83976 1.24370 0.93277 0.81133 0.71769 1.90824 1.68162 1.37760 1.45815 1.22004 0.85962 0.97152 1.10185 1.20852 0.94687 0.91423 0.86951 0.92571 1.45589 1.69512 1.06501 1.13645 1.18437 0.75357 0.82651 0.87745 1.90664 1.53209 1.64506 1.37650 1.19891 1.05700 0.94565 0.93940 1.20802 1.10309 0.98489 0.92344 1.20902 0.98627 0.94236 0.97574 1.21386 1.09721 0.94333 0.98539 1.17956 0.89549 0.94229 0.91727 1.19896 1.43982 0.93070 0.95778 0.89755 1.26892 0.91272 1.06371 0.94056 1.69924 1.30680 1.40580 1.04091 0.85147 0.79017 0.75687 0.79803 1.17208 1.19550 1.18828 1.21426 1.01661 0.93276 0.98894 1.20918 0.92447 0.95310 0.98517 1.21951 1.02236 1.01309 0.94283 1.21937 1.00967 1.00927 0.96068 1.21827 1.00147 0.96244 1.00457 0.92763 0.84530 0.92857 0.82449 0.83405 0.75816 0.85135 0.84436 0.87374 0.90428 0.88521 0.89167 0.91074 0.93628 0.91596 0.93730 0.89192 0.94906 0.95574 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -7.05 10.57 -51.49 -0.54 -7.60 16 3 C 0.45 10.88 7.82 71.23 0.56 11.44 16 4 O -0.54 -19.08 15.10 21.95 0.33 -18.75 16 5 C -0.12 -1.90 4.63 29.85 0.14 -1.76 16 6 C 0.17 4.36 1.09 44.99 0.05 4.41 16 7 H 0.06 1.97 7.39 -2.38 -0.02 1.95 16 8 N -0.70 -23.00 3.29 -445.36 -1.47 -24.47 16 9 C 0.57 26.12 6.13 86.80 0.53 26.65 16 10 O -0.58 -31.00 13.45 -3.85 -0.05 -31.05 16 11 C -0.14 -6.88 5.87 -20.13 -0.12 -7.00 16 12 C -0.20 -8.32 9.55 22.70 0.22 -8.10 16 13 C -0.10 -3.97 10.01 22.18 0.22 -3.75 16 14 C -0.22 -10.73 9.78 22.77 0.22 -10.50 16 15 C 0.07 3.83 5.57 -21.32 -0.12 3.71 16 16 C -0.50 -28.15 9.05 23.47 0.21 -27.94 16 17 H 0.08 4.49 7.91 -2.91 -0.02 4.47 16 18 C 0.03 1.56 5.14 85.25 0.44 2.00 16 19 N -0.83 -48.41 10.96 21.83 0.24 -48.17 16 20 Si 0.98 41.15 29.60 68.60 2.03 43.19 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 C -0.13 -7.69 8.24 23.01 0.19 -7.50 16 25 C -0.07 -1.55 0.62 -52.18 -0.03 -1.58 16 26 C -0.14 -2.15 8.13 71.98 0.59 -1.56 16 27 C -0.14 -2.31 7.96 71.98 0.57 -1.74 16 28 C -0.13 -4.06 7.00 71.98 0.50 -3.56 16 29 H 0.05 1.01 8.13 -2.39 -0.02 1.00 16 30 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.16 1.48 6.17 -2.39 -0.01 1.46 16 33 H 0.15 1.43 6.71 -2.38 -0.02 1.41 16 34 H 0.40 11.15 6.62 -92.71 -0.61 10.53 16 35 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 36 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.29 15.40 8.30 -92.71 -0.77 14.63 16 39 H 0.10 6.28 5.74 -2.91 -0.02 6.26 16 40 H 0.09 0.78 6.32 -2.39 -0.02 0.76 16 41 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.04 0.89 7.60 -2.39 -0.02 0.87 16 45 H 0.09 0.83 6.54 -2.38 -0.02 0.82 16 46 H 0.03 1.20 7.53 -2.39 -0.02 1.18 16 47 H 0.03 0.99 5.77 -2.39 -0.01 0.97 16 48 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -81.22 383.50 6.27 -74.95 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.37 Total: 36.98 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 5.37 Total: -25.09 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.23 Total: -72.64 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -0.26 Total: -57.39 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.19 kcal Total: -81.22 6.27 -74.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889179391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.072 kcal (2) G-P(sol) polarization free energy of solvation -81.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds