Wall clock time and date at job start Tue Mar 31 2020 18:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21284 * 120.00098 * 2 1 4 4 N 1.34776 * 120.00444 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00590 * 185.22974 * 4 2 1 6 6 C 1.53003 * 109.46875 * 63.14868 * 5 4 2 7 7 C 1.50700 * 109.47231 * 303.15107 * 5 4 2 8 8 O 1.20831 * 119.99985 * 144.99659 * 7 5 4 9 9 O 1.34224 * 120.00192 * 324.99684 * 7 5 4 10 10 C 1.45196 * 117.00213 * 179.97438 * 9 7 5 11 11 C 1.50705 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.38636 * 119.74824 * 269.72899 * 11 10 9 13 13 C 1.37620 * 120.24990 * 179.72103 * 12 11 10 14 14 C 1.40717 * 119.74033 * 0.57053 * 13 12 11 15 15 C 1.41394 * 120.24334 * 179.67808 * 14 13 12 16 16 H 1.07992 * 120.00281 * 210.01459 * 15 14 13 17 17 C 1.39951 * 119.99901 * 30.02607 * 15 14 13 18 18 N 1.30823 * 119.99640 * 10.82946 * 17 15 14 19 19 Si 1.86796 * 119.99991 * 190.83029 * 17 15 14 20 20 H 1.48500 * 109.47049 * 89.99924 * 19 17 15 21 21 H 1.48495 * 109.46992 * 209.99701 * 19 17 15 22 22 H 1.48505 * 109.46943 * 329.99743 * 19 17 15 23 23 C 1.40717 * 119.51227 * 359.70816 * 14 13 12 24 24 C 1.37619 * 119.74655 * 359.97438 * 23 14 13 25 25 C 1.52995 * 109.47553 * 183.14811 * 5 4 2 26 26 C 1.53004 * 109.47388 * 297.49836 * 25 5 4 27 27 C 1.53002 * 109.47140 * 57.49885 * 25 5 4 28 28 H 1.09008 * 109.47128 * 240.00482 * 1 2 3 29 29 H 1.08998 * 109.47440 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47555 * 120.00495 * 1 2 3 31 31 H 0.97005 * 119.99782 * 5.23664 * 4 2 1 32 32 H 1.08999 * 109.47063 * 300.00188 * 6 5 4 33 33 H 1.09004 * 109.46967 * 60.00142 * 6 5 4 34 34 H 1.09001 * 109.46916 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47127 * 60.00590 * 10 9 7 36 36 H 1.08997 * 109.47421 * 300.00004 * 10 9 7 37 37 H 1.08001 * 119.87715 * 359.97438 * 12 11 10 38 38 H 1.07993 * 120.12752 * 180.27750 * 13 12 11 39 39 H 0.97006 * 119.99543 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.12572 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87616 * 180.02562 * 24 23 14 42 42 H 1.09006 * 109.47379 * 177.49977 * 25 5 4 43 43 H 1.09004 * 109.46551 * 63.16657 * 26 25 5 44 44 H 1.08996 * 109.47184 * 183.16812 * 26 25 5 45 45 H 1.08998 * 109.46540 * 303.17250 * 26 25 5 46 46 H 1.08999 * 109.47134 * 59.99519 * 27 25 5 47 47 H 1.08999 * 109.47225 * 180.02562 * 27 25 5 48 48 H 1.09006 * 109.47059 * 300.00288 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6413 -1.1698 0.1162 6 6 4.0469 -0.5779 1.4675 7 6 4.2346 -0.3408 -0.9937 8 8 5.2326 0.3104 -0.7941 9 8 3.6544 -0.3258 -2.2040 10 6 4.2801 0.4954 -3.2249 11 6 3.4949 0.3883 -4.5068 12 6 3.8181 -0.5928 -5.4315 13 6 3.1042 -0.7035 -6.6029 14 6 2.0505 0.1914 -6.8655 15 6 1.3144 0.0915 -8.0686 16 1 0.8774 0.9753 -8.5092 17 6 1.1521 -1.1527 -8.6883 18 7 1.4923 -2.2470 -8.0574 19 14 0.4496 -1.2509 -10.4164 20 1 1.5556 -1.1811 -11.4050 21 1 -0.2816 -2.5327 -10.5814 22 1 -0.4835 -0.1167 -10.6365 23 6 1.7352 1.1869 -5.9222 24 6 2.4583 1.2748 -4.7546 25 6 4.1586 -2.6059 0.0125 26 6 3.6057 -3.4324 1.1754 27 6 3.6999 -3.2188 -1.3122 28 1 -0.3634 -0.5138 0.8901 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 1.6989 -2.0055 -0.0758 32 1 3.6783 0.4453 1.5413 33 1 3.6177 -1.1775 2.2703 34 1 5.1335 -0.5794 1.5534 35 1 5.3003 0.1507 -3.3936 36 1 4.2973 1.5342 -2.8956 37 1 4.6305 -1.2752 -5.2301 38 1 3.3548 -1.4713 -7.3198 39 1 1.3801 -3.1095 -8.4871 40 1 0.9287 1.8792 -6.1138 41 1 2.2178 2.0378 -4.0290 42 1 5.2478 -2.6036 0.0540 43 1 2.5193 -3.4815 1.1019 44 1 4.0187 -4.4402 1.1335 45 1 3.8852 -2.9640 2.1191 46 1 4.0937 -2.6301 -2.1406 47 1 4.0681 -4.2421 -1.3858 48 1 2.6106 -3.2211 -1.3537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904179171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:50 Heat of formation + Delta-G solvation = -118.730523 kcal Electronic energy + Delta-G solvation = -29721.211230 eV Core-core repulsion = 25740.460776 eV Total energy + Delta-G solvation = -3980.750454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.03232 -39.15001 -37.75475 -37.13815 -35.90080 -33.79091 -33.19041 -30.99960 -30.70436 -29.36894 -28.99265 -27.75295 -27.01341 -24.84037 -23.61650 -21.73011 -21.07289 -21.05621 -20.01217 -19.32242 -17.68687 -17.34906 -17.25919 -16.46673 -15.85122 -15.37667 -15.10670 -15.01109 -14.58859 -14.41350 -14.04825 -13.85360 -13.66362 -13.44458 -13.05951 -12.80251 -12.62304 -12.51309 -12.43362 -12.28201 -12.21078 -12.07343 -12.00450 -11.88799 -11.71440 -11.26741 -11.17366 -11.11317 -11.06194 -10.96297 -10.77544 -10.40774 -10.23070 -10.02387 -9.83374 -9.66816 -9.41959 -9.29583 -9.14424 -7.54079 -7.37115 -6.78746 -4.45986 2.42252 2.48581 2.67307 2.97319 3.01140 3.04459 3.07356 3.12255 3.42822 3.89126 4.30808 4.50799 4.57536 4.72124 4.79488 5.08158 5.14740 5.20403 5.22299 5.34754 5.42054 5.50215 5.58314 5.61565 5.63239 5.70920 5.74283 5.77576 5.81448 5.82393 5.99545 6.12217 6.13411 6.23793 6.28287 6.32197 6.34361 6.87503 6.98316 7.02253 7.19093 7.28332 7.40299 7.54792 7.74982 7.98445 8.01988 8.15419 8.22169 8.22602 8.56575 8.81955 8.88380 10.15625 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003017 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.525608 B = 9277.972119 C = 9437.369103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.535 6.535 4 N -0.716 5.716 5 C 0.192 3.808 6 C -0.153 4.153 7 C 0.466 3.534 8 O -0.517 6.517 9 O -0.338 6.338 10 C 0.134 3.866 11 C -0.223 4.223 12 C -0.080 4.080 13 C -0.161 4.161 14 C 0.119 3.881 15 C -0.461 4.461 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.797 5.797 19 Si 0.912 3.088 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.224 4.224 24 C -0.066 4.066 25 C -0.097 4.097 26 C -0.147 4.147 27 C -0.155 4.155 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.405 0.595 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.280 0.720 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -5.625 15.967 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.304 3.696 3 O -0.411 6.411 4 N -0.373 5.373 5 C 0.104 3.896 6 C -0.211 4.211 7 C 0.308 3.692 8 O -0.405 6.405 9 O -0.254 6.254 10 C 0.062 3.938 11 C -0.225 4.225 12 C -0.098 4.098 13 C -0.180 4.180 14 C 0.116 3.884 15 C -0.491 4.491 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.423 5.423 19 Si 0.737 3.263 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.243 4.243 24 C -0.085 4.085 25 C -0.116 4.116 26 C -0.204 4.204 27 C -0.212 4.212 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.242 0.758 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.610 -4.896 15.951 16.697 hybrid contribution -0.510 -0.484 -0.903 1.144 sum 0.100 -5.380 15.048 15.981 Atomic orbital electron populations 1.21899 0.91243 1.05734 1.04318 1.20845 0.90784 0.83295 0.74715 1.90743 1.70543 1.31349 1.48466 1.46068 1.05611 1.09578 1.75997 1.20244 0.81242 0.95445 0.92686 1.22137 1.02968 1.02660 0.93331 1.23552 0.82165 0.79547 0.83936 1.90602 1.25895 1.41086 1.82924 1.86696 1.54920 1.64043 1.19726 1.21693 0.94865 0.93073 0.84161 1.18721 1.04747 1.03802 0.95180 1.20543 0.98543 0.95939 0.94811 1.21292 0.96564 1.02634 0.97524 1.17685 0.89463 0.89744 0.91463 1.19640 1.29296 0.94239 1.05926 0.90340 1.25913 0.93981 0.95257 0.99202 1.69797 1.36757 0.98919 1.36835 0.86249 0.79634 0.78579 0.81886 1.19291 1.20258 1.18620 1.21035 1.02972 1.04664 0.95644 1.20424 0.94509 0.97195 0.96357 1.21401 1.01732 0.90902 0.97519 1.21915 1.01207 0.99871 0.97425 1.21954 1.02076 1.01117 0.96097 0.89542 0.88887 0.88897 0.75832 0.90500 0.90868 0.90443 0.92337 0.92248 0.89404 0.86286 0.90868 0.88721 0.89301 0.89104 0.92289 0.91664 0.91727 0.91173 0.91845 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.32 36.00 0.37 -1.25 16 2 C 0.52 7.00 7.16 -10.99 -0.08 6.92 16 3 O -0.53 -9.77 14.44 5.55 0.08 -9.69 16 4 N -0.72 -8.20 4.30 -48.69 -0.21 -8.41 16 5 C 0.19 2.46 0.42 -132.97 -0.06 2.41 16 6 C -0.15 -1.82 7.57 37.16 0.28 -1.54 16 7 C 0.47 8.29 4.44 36.01 0.16 8.45 16 8 O -0.52 -10.40 15.84 -18.75 -0.30 -10.70 16 9 O -0.34 -6.60 8.43 -39.24 -0.33 -6.93 16 10 C 0.13 2.77 5.58 36.01 0.20 2.97 16 11 C -0.22 -5.08 5.54 -104.33 -0.58 -5.66 16 12 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 13 C -0.16 -4.13 8.65 -38.87 -0.34 -4.46 16 14 C 0.12 3.14 5.53 -106.82 -0.59 2.55 16 15 C -0.46 -12.05 9.06 -37.74 -0.34 -12.39 16 16 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.81 5.24 -17.34 -0.09 1.72 16 18 N -0.80 -20.20 10.93 55.55 0.61 -19.60 16 19 Si 0.91 18.35 29.57 -169.99 -5.03 13.33 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.22 -5.51 9.80 -38.87 -0.38 -5.90 16 24 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 25 C -0.10 -0.97 2.25 -90.62 -0.20 -1.17 16 26 C -0.15 -1.00 8.68 37.16 0.32 -0.68 16 27 C -0.16 -1.71 8.66 37.16 0.32 -1.39 16 28 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.40 3.44 6.20 -40.82 -0.25 3.19 16 32 H 0.08 1.12 6.58 -51.93 -0.34 0.77 16 33 H 0.07 0.64 6.31 -51.93 -0.33 0.32 16 34 H 0.08 0.91 7.87 -51.93 -0.41 0.51 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.14 6.32 -52.49 -0.33 2.81 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 40 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.34 7.04 -51.93 -0.37 -0.02 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.40 6.20 -51.93 -0.32 0.08 16 46 H 0.07 1.00 6.46 -51.93 -0.34 0.67 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -32.03 388.15 -8.32 -40.36 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.23 Total: 9.40 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.77 Total: -13.60 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.40 Total: -28.01 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.55 Total: -27.32 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.03 -8.32 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904179171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.375 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds