Wall clock time and date at job start Tue Mar 31 2020 18:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21284 * 120.00098 * 2 1 4 4 N 1.34776 * 120.00444 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00590 * 185.22974 * 4 2 1 6 6 C 1.53003 * 109.46875 * 63.14868 * 5 4 2 7 7 C 1.50700 * 109.47231 * 303.15107 * 5 4 2 8 8 O 1.20831 * 119.99985 * 144.99659 * 7 5 4 9 9 O 1.34224 * 120.00192 * 324.99684 * 7 5 4 10 10 C 1.45196 * 117.00213 * 179.97438 * 9 7 5 11 11 C 1.50705 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.38636 * 119.74824 * 269.72899 * 11 10 9 13 13 C 1.37620 * 120.24990 * 179.72103 * 12 11 10 14 14 C 1.40717 * 119.74033 * 0.57053 * 13 12 11 15 15 C 1.41394 * 120.24334 * 179.67808 * 14 13 12 16 16 H 1.07992 * 120.00281 * 210.01459 * 15 14 13 17 17 C 1.39951 * 119.99901 * 30.02607 * 15 14 13 18 18 N 1.30823 * 119.99640 * 10.82946 * 17 15 14 19 19 Si 1.86796 * 119.99991 * 190.83029 * 17 15 14 20 20 H 1.48500 * 109.47049 * 89.99924 * 19 17 15 21 21 H 1.48495 * 109.46992 * 209.99701 * 19 17 15 22 22 H 1.48505 * 109.46943 * 329.99743 * 19 17 15 23 23 C 1.40717 * 119.51227 * 359.70816 * 14 13 12 24 24 C 1.37619 * 119.74655 * 359.97438 * 23 14 13 25 25 C 1.52995 * 109.47553 * 183.14811 * 5 4 2 26 26 C 1.53004 * 109.47388 * 297.49836 * 25 5 4 27 27 C 1.53002 * 109.47140 * 57.49885 * 25 5 4 28 28 H 1.09008 * 109.47128 * 240.00482 * 1 2 3 29 29 H 1.08998 * 109.47440 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47555 * 120.00495 * 1 2 3 31 31 H 0.97005 * 119.99782 * 5.23664 * 4 2 1 32 32 H 1.08999 * 109.47063 * 300.00188 * 6 5 4 33 33 H 1.09004 * 109.46967 * 60.00142 * 6 5 4 34 34 H 1.09001 * 109.46916 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47127 * 60.00590 * 10 9 7 36 36 H 1.08997 * 109.47421 * 300.00004 * 10 9 7 37 37 H 1.08001 * 119.87715 * 359.97438 * 12 11 10 38 38 H 1.07993 * 120.12752 * 180.27750 * 13 12 11 39 39 H 0.97006 * 119.99543 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.12572 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87616 * 180.02562 * 24 23 14 42 42 H 1.09006 * 109.47379 * 177.49977 * 25 5 4 43 43 H 1.09004 * 109.46551 * 63.16657 * 26 25 5 44 44 H 1.08996 * 109.47184 * 183.16812 * 26 25 5 45 45 H 1.08998 * 109.46540 * 303.17250 * 26 25 5 46 46 H 1.08999 * 109.47134 * 59.99519 * 27 25 5 47 47 H 1.08999 * 109.47225 * 180.02562 * 27 25 5 48 48 H 1.09006 * 109.47059 * 300.00288 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6413 -1.1698 0.1162 6 6 4.0469 -0.5779 1.4675 7 6 4.2346 -0.3408 -0.9937 8 8 5.2326 0.3104 -0.7941 9 8 3.6544 -0.3258 -2.2040 10 6 4.2801 0.4954 -3.2249 11 6 3.4949 0.3883 -4.5068 12 6 3.8181 -0.5928 -5.4315 13 6 3.1042 -0.7035 -6.6029 14 6 2.0505 0.1914 -6.8655 15 6 1.3144 0.0915 -8.0686 16 1 0.8774 0.9753 -8.5092 17 6 1.1521 -1.1527 -8.6883 18 7 1.4923 -2.2470 -8.0574 19 14 0.4496 -1.2509 -10.4164 20 1 1.5556 -1.1811 -11.4050 21 1 -0.2816 -2.5327 -10.5814 22 1 -0.4835 -0.1167 -10.6365 23 6 1.7352 1.1869 -5.9222 24 6 2.4583 1.2748 -4.7546 25 6 4.1586 -2.6059 0.0125 26 6 3.6057 -3.4324 1.1754 27 6 3.6999 -3.2188 -1.3122 28 1 -0.3634 -0.5138 0.8901 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 1.6989 -2.0055 -0.0758 32 1 3.6783 0.4453 1.5413 33 1 3.6177 -1.1775 2.2703 34 1 5.1335 -0.5794 1.5534 35 1 5.3003 0.1507 -3.3936 36 1 4.2973 1.5342 -2.8956 37 1 4.6305 -1.2752 -5.2301 38 1 3.3548 -1.4713 -7.3198 39 1 1.3801 -3.1095 -8.4871 40 1 0.9287 1.8792 -6.1138 41 1 2.2178 2.0378 -4.0290 42 1 5.2478 -2.6036 0.0540 43 1 2.5193 -3.4815 1.1019 44 1 4.0187 -4.4402 1.1335 45 1 3.8852 -2.9640 2.1191 46 1 4.0937 -2.6301 -2.1406 47 1 4.0681 -4.2421 -1.3858 48 1 2.6106 -3.2211 -1.3537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904179171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:49 Heat of formation + Delta-G solvation = -136.468253 kcal Electronic energy + Delta-G solvation = -29721.980395 eV Core-core repulsion = 25740.460776 eV Total energy + Delta-G solvation = -3981.519620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.26324 -40.46562 -39.53189 -38.30100 -37.43498 -35.65749 -34.16457 -32.62461 -31.86682 -31.29275 -29.86220 -29.17287 -28.14198 -26.17509 -25.15110 -23.01896 -22.93034 -22.01110 -21.84794 -20.48700 -19.27645 -19.00007 -18.25377 -17.95308 -17.30688 -17.12773 -16.24706 -16.20187 -15.90090 -15.65930 -15.48143 -15.36518 -14.91936 -14.60533 -14.48863 -14.07773 -13.93317 -13.87153 -13.68778 -13.58628 -13.40526 -13.27366 -13.13786 -12.95086 -12.87268 -12.76446 -12.74942 -12.61035 -12.30515 -12.10076 -11.92571 -11.79528 -11.70241 -11.56755 -11.43551 -11.31252 -11.10687 -10.93634 -10.28827 -9.47223 -9.30999 -8.64130 -6.43091 0.69056 1.05538 1.11598 1.39163 1.42819 1.52515 1.58644 1.90417 2.17876 2.21067 2.73082 3.38647 3.49895 3.65164 3.78684 3.91937 4.01313 4.02682 4.07528 4.27240 4.39631 4.42857 4.43646 4.48110 4.49539 4.59701 4.67599 4.69220 4.80148 4.89648 4.95500 4.97784 5.07621 5.09488 5.11687 5.17955 5.25010 5.30057 5.35655 5.37603 5.42553 5.51611 5.62454 5.83199 6.03532 6.09307 6.29198 6.48038 6.61822 6.72738 6.88134 6.93567 7.20633 8.32810 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003017 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.525608 B = 9277.972119 C = 9437.369103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.506 3.494 3 O -0.589 6.589 4 N -0.702 5.702 5 C 0.193 3.807 6 C -0.147 4.147 7 C 0.459 3.541 8 O -0.547 6.547 9 O -0.345 6.345 10 C 0.140 3.860 11 C -0.219 4.219 12 C -0.079 4.079 13 C -0.179 4.179 14 C 0.092 3.908 15 C -0.496 4.496 16 H 0.078 0.922 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.259 1.259 23 C -0.235 4.235 24 C -0.070 4.070 25 C -0.090 4.090 26 C -0.142 4.142 27 C -0.155 4.155 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.422 0.578 32 H 0.046 0.954 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.289 0.711 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.031 0.969 47 H 0.082 0.918 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -7.636 17.178 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.470 6.470 4 N -0.359 5.359 5 C 0.104 3.896 6 C -0.205 4.205 7 C 0.302 3.698 8 O -0.437 6.437 9 O -0.261 6.261 10 C 0.067 3.933 11 C -0.220 4.220 12 C -0.098 4.098 13 C -0.198 4.198 14 C 0.089 3.911 15 C -0.525 4.525 16 H 0.096 0.904 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.807 3.193 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.255 4.255 24 C -0.088 4.088 25 C -0.109 4.109 26 C -0.199 4.199 27 C -0.213 4.213 28 H 0.144 0.856 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.101 0.899 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.500 -6.950 17.186 18.545 hybrid contribution -0.104 0.144 -1.164 1.178 sum -0.604 -6.806 16.022 17.418 Atomic orbital electron populations 1.21925 0.87927 1.06045 1.06529 1.21669 0.92481 0.82835 0.73446 1.90727 1.71863 1.33312 1.51049 1.46008 1.05042 1.10013 1.74865 1.20438 0.81917 0.96364 0.90855 1.22132 1.02998 1.01568 0.93764 1.24716 0.81774 0.79356 0.83930 1.90576 1.27374 1.42556 1.83176 1.86677 1.55173 1.63759 1.20491 1.21467 0.94895 0.93076 0.83842 1.18927 1.04225 1.02979 0.95887 1.20722 0.98651 0.96262 0.94133 1.21252 0.97372 1.02916 0.98279 1.18011 0.90105 0.90609 0.92345 1.19894 1.30616 0.95189 1.06842 0.90392 1.26761 0.93875 0.94309 1.03053 1.69845 1.37146 0.99628 1.38555 0.85137 0.78947 0.78914 0.76322 1.18717 1.19066 1.18293 1.21192 1.03604 1.04756 0.95925 1.20614 0.94419 0.97554 0.96194 1.21433 1.01718 0.89155 0.98551 1.21922 1.02088 0.99940 0.95932 1.21959 1.02421 1.01614 0.95266 0.85623 0.89642 0.88099 0.73832 0.93446 0.87081 0.90662 0.91572 0.92945 0.87511 0.87559 0.90002 0.87956 0.87881 0.89348 0.90822 0.90114 0.90700 0.94949 0.89895 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.32 71.23 0.74 -2.03 16 2 C 0.51 13.23 7.16 87.65 0.63 13.86 16 3 O -0.59 -21.85 14.44 -3.04 -0.04 -21.90 16 4 N -0.70 -14.80 4.30 -426.35 -1.84 -16.64 16 5 C 0.19 4.72 0.42 2.86 0.00 4.72 16 6 C -0.15 -3.30 7.57 71.98 0.54 -2.75 16 7 C 0.46 16.45 4.44 71.24 0.32 16.76 16 8 O -0.55 -22.52 15.84 21.95 0.35 -22.17 16 9 O -0.35 -13.64 8.43 -51.36 -0.43 -14.08 16 10 C 0.14 5.86 5.58 71.24 0.40 6.25 16 11 C -0.22 -10.09 5.54 -19.67 -0.11 -10.20 16 12 C -0.08 -3.77 9.67 22.22 0.21 -3.56 16 13 C -0.18 -9.43 8.65 22.73 0.20 -9.24 16 14 C 0.09 4.97 5.53 -21.29 -0.12 4.86 16 15 C -0.50 -26.51 9.06 23.46 0.21 -26.30 16 16 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 17 C 0.03 1.72 5.24 85.26 0.45 2.17 16 18 N -0.83 -42.27 10.93 21.83 0.24 -42.03 16 19 Si 0.99 37.40 29.57 68.60 2.03 39.42 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 C -0.24 -11.86 9.80 22.73 0.22 -11.64 16 24 C -0.07 -3.28 9.67 22.22 0.21 -3.06 16 25 C -0.09 -1.59 2.25 -10.79 -0.02 -1.62 16 26 C -0.14 -1.35 8.68 71.98 0.62 -0.73 16 27 C -0.16 -3.17 8.66 71.98 0.62 -2.55 16 28 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.42 5.91 6.20 -92.70 -0.57 5.33 16 32 H 0.05 1.37 6.58 -2.39 -0.02 1.35 16 33 H 0.11 1.60 6.31 -2.39 -0.02 1.58 16 34 H 0.07 1.71 7.87 -2.39 -0.02 1.69 16 35 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 36 H 0.05 2.25 8.07 -2.39 -0.02 2.23 16 37 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.11 5.80 6.32 -2.91 -0.02 5.78 16 39 H 0.29 13.32 8.30 -92.70 -0.77 12.55 16 40 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 42 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.07 0.51 7.04 -2.39 -0.02 0.49 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 0.60 6.20 -2.39 -0.01 0.59 16 46 H 0.03 0.90 6.46 -2.39 -0.02 0.89 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.27 6.78 -2.38 -0.02 1.26 16 Total: -1.00 -73.04 388.15 5.83 -67.21 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.40 Total: 35.23 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 5.13 Total: -25.05 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -1.60 Total: -58.67 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -0.13 Total: -58.14 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Total: -73.04 5.83 -67.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904179171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.260 kcal (2) G-P(sol) polarization free energy of solvation -73.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds