Wall clock time and date at job start Tue Mar 31 2020 18:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99586 * 2 1 4 4 N 1.34777 * 120.00260 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99924 * 185.02290 * 4 2 1 6 6 C 1.52998 * 109.47230 * 56.95269 * 5 4 2 7 7 C 1.50702 * 109.46828 * 176.95354 * 5 4 2 8 8 O 1.20828 * 120.00150 * 145.00178 * 7 5 4 9 9 O 1.34232 * 120.00056 * 324.99554 * 7 5 4 10 10 C 1.45200 * 116.99702 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.46493 * 180.02562 * 10 9 7 12 12 C 1.38634 * 119.74913 * 269.72562 * 11 10 9 13 13 C 1.37623 * 120.24758 * 179.72747 * 12 11 10 14 14 C 1.40722 * 119.74251 * 0.56721 * 13 12 11 15 15 C 1.41399 * 120.24344 * 179.68574 * 14 13 12 16 16 H 1.07990 * 119.99725 * 209.35673 * 15 14 13 17 17 C 1.39941 * 119.99735 * 29.35206 * 15 14 13 18 18 N 1.30828 * 120.00495 * 10.35521 * 17 15 14 19 19 Si 1.86804 * 119.99820 * 190.35381 * 17 15 14 20 20 H 1.48494 * 109.47124 * 59.99956 * 19 17 15 21 21 H 1.48498 * 109.47308 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47038 * 300.00357 * 19 17 15 23 23 C 1.40710 * 119.51106 * 359.70698 * 14 13 12 24 24 C 1.37623 * 119.74771 * 359.97438 * 23 14 13 25 25 C 1.53007 * 109.47279 * 296.94845 * 5 4 2 26 26 C 1.52997 * 109.46976 * 173.34201 * 25 5 4 27 27 C 1.53001 * 109.47143 * 293.34363 * 25 5 4 28 28 H 1.09001 * 109.46896 * 269.99816 * 1 2 3 29 29 H 1.08994 * 109.47377 * 30.00274 * 1 2 3 30 30 H 1.09001 * 109.47104 * 149.99868 * 1 2 3 31 31 H 0.97001 * 119.99480 * 5.02559 * 4 2 1 32 32 H 1.09001 * 109.47162 * 299.99527 * 6 5 4 33 33 H 1.08993 * 109.47308 * 60.00047 * 6 5 4 34 34 H 1.09005 * 109.47076 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47271 * 299.99671 * 10 9 7 36 36 H 1.08992 * 109.47286 * 60.00097 * 10 9 7 37 37 H 1.07997 * 119.87878 * 359.97438 * 12 11 10 38 38 H 1.07992 * 120.13012 * 180.27974 * 13 12 11 39 39 H 0.97002 * 120.00012 * 179.97438 * 18 17 15 40 40 H 1.08010 * 120.12643 * 179.97438 * 23 14 13 41 41 H 1.07997 * 119.87442 * 180.02562 * 24 23 14 42 42 H 1.09001 * 109.46799 * 53.34397 * 25 5 4 43 43 H 1.08999 * 109.47496 * 59.99999 * 26 25 5 44 44 H 1.09002 * 109.46669 * 180.02562 * 26 25 5 45 45 H 1.09007 * 109.47017 * 299.99933 * 26 25 5 46 46 H 1.09000 * 109.46838 * 304.29767 * 27 25 5 47 47 H 1.08997 * 109.46833 * 64.29800 * 27 25 5 48 48 H 1.08999 * 109.46957 * 184.29623 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6417 -1.1695 0.1116 6 6 4.0572 -0.4368 1.3888 7 6 4.1392 -2.5910 0.1634 8 8 5.1907 -2.8825 -0.3557 9 8 3.4143 -3.5335 0.7864 10 6 3.9553 -4.8810 0.7975 11 6 3.0113 -5.7950 1.5353 12 6 3.1580 -5.9777 2.9017 13 6 2.2982 -6.8057 3.5867 14 6 1.2747 -7.4774 2.8928 15 6 0.3895 -8.3358 3.5849 16 1 -0.0544 -9.1781 3.0754 17 6 0.0889 -8.0937 4.9300 18 7 0.4585 -6.9712 5.4913 19 14 -0.8404 -9.3733 5.9243 20 1 -0.0633 -10.6384 5.9524 21 1 -1.0324 -8.8788 7.3113 22 1 -2.1648 -9.6198 5.2993 23 6 1.1388 -7.2888 1.5050 24 6 2.0060 -6.4509 0.8416 25 6 4.2466 -0.4614 -1.1024 26 6 5.7573 -0.3166 -0.9079 27 6 3.9712 -1.2844 -2.3624 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6987 -2.0056 -0.0727 32 1 3.6974 0.5914 1.3513 33 1 3.6263 -0.9412 2.2536 34 1 5.1441 -0.4389 1.4717 35 1 4.0747 -5.2330 -0.2272 36 1 4.9243 -4.8794 1.2964 37 1 3.9475 -5.4653 3.4313 38 1 2.4114 -6.9432 4.6519 39 1 0.2498 -6.8033 6.4236 40 1 0.3570 -7.7996 0.9624 41 1 1.9033 -6.3043 -0.2234 42 1 3.7976 0.5261 -1.2081 43 1 6.2064 -1.3041 -0.8021 44 1 6.1881 0.1882 -1.7725 45 1 5.9534 0.2698 -0.0101 46 1 4.3536 -2.2960 -2.2264 47 1 2.8971 -1.3233 -2.5434 48 1 4.4668 -0.8202 -3.2151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904179172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:54 Heat of formation + Delta-G solvation = -127.052300 kcal Electronic energy + Delta-G solvation = -29216.593479 eV Core-core repulsion = 25235.482166 eV Total energy + Delta-G solvation = -3981.111313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.38106 -40.64611 -39.53116 -38.18699 -36.99461 -35.66033 -34.45604 -32.62291 -31.83687 -31.22676 -29.95921 -29.05346 -27.88240 -26.26932 -25.17247 -23.21257 -22.93271 -21.83553 -21.80141 -20.45025 -19.25183 -19.20775 -18.14197 -17.64100 -17.22548 -17.13423 -16.50551 -16.29178 -15.81006 -15.69810 -15.58994 -15.15965 -14.95183 -14.67440 -14.39142 -14.08788 -13.93612 -13.84407 -13.67218 -13.56337 -13.41505 -13.24506 -13.05703 -12.97970 -12.91324 -12.75748 -12.69728 -12.60012 -12.36512 -12.11109 -11.98379 -11.92134 -11.67841 -11.52590 -11.27041 -11.24938 -11.08284 -10.53974 -10.19076 -9.41789 -9.26766 -8.61989 -6.40925 0.71066 0.95682 1.11863 1.39200 1.43224 1.50921 1.60834 1.78180 2.14796 2.20799 2.74436 3.33703 3.63154 3.70466 3.81951 3.91362 4.06614 4.11395 4.13570 4.30574 4.46143 4.47414 4.49087 4.53988 4.57054 4.58356 4.68040 4.73122 4.78854 4.88757 4.93766 5.02457 5.04107 5.08798 5.13865 5.14751 5.18088 5.30812 5.31529 5.34183 5.40532 5.66790 5.67278 5.88517 6.07621 6.14224 6.34064 6.47554 6.63896 6.66494 6.91035 6.98075 7.18331 8.33421 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.002746 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.665901 B =10194.271267 C =10963.118833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.515 3.485 3 O -0.575 6.575 4 N -0.716 5.716 5 C 0.196 3.804 6 C -0.164 4.164 7 C 0.464 3.536 8 O -0.506 6.506 9 O -0.354 6.354 10 C 0.140 3.860 11 C -0.221 4.221 12 C -0.084 4.084 13 C -0.185 4.185 14 C 0.088 3.912 15 C -0.496 4.496 16 H 0.079 0.921 17 C 0.033 3.967 18 N -0.828 5.828 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.259 1.259 23 C -0.237 4.237 24 C -0.065 4.065 25 C -0.089 4.089 26 C -0.161 4.161 27 C -0.151 4.151 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.416 0.584 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.288 0.712 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 11.056 -9.300 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.305 3.695 3 O -0.455 6.455 4 N -0.371 5.371 5 C 0.108 3.892 6 C -0.221 4.221 7 C 0.307 3.693 8 O -0.395 6.395 9 O -0.270 6.270 10 C 0.068 3.932 11 C -0.222 4.222 12 C -0.102 4.102 13 C -0.205 4.205 14 C 0.086 3.914 15 C -0.525 4.525 16 H 0.097 0.903 17 C -0.181 4.181 18 N -0.454 5.454 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.183 1.183 23 C -0.257 4.257 24 C -0.083 4.083 25 C -0.109 4.109 26 C -0.218 4.218 27 C -0.208 4.208 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.828 11.774 -9.203 15.209 hybrid contribution -0.466 -1.104 0.733 1.404 sum 2.362 10.670 -8.470 13.826 Atomic orbital electron populations 1.21930 0.88464 1.06256 1.06080 1.21406 0.91946 0.82378 0.73778 1.90637 1.71387 1.32374 1.51057 1.46154 1.05459 1.10431 1.75087 1.20342 0.82187 0.87491 0.99139 1.22269 1.03125 1.02431 0.94324 1.23827 0.82990 0.88166 0.74322 1.90567 1.23613 1.81809 1.43463 1.86669 1.50992 1.20210 1.69166 1.21633 0.95033 0.76335 1.00222 1.18989 1.03674 1.05821 0.93742 1.20787 0.98129 0.97554 0.93759 1.21289 0.96660 1.03016 0.99497 1.18037 0.90505 0.90617 0.92257 1.19887 1.24716 1.11647 0.96274 0.90324 1.26752 0.95662 0.97176 0.98557 1.69844 1.38030 1.23236 1.14278 0.85224 0.78979 0.78345 0.77027 1.18513 1.19389 1.18331 1.21240 1.03205 1.06244 0.94968 1.20718 0.93442 0.95500 0.98685 1.21402 0.97315 0.99938 0.92221 1.22187 0.93916 1.03529 1.02217 1.21936 1.01523 1.00126 0.97204 0.87681 0.88001 0.88171 0.74735 0.88987 0.91959 0.89890 0.90352 0.91334 0.87829 0.87996 0.90171 0.87813 0.85991 0.88581 0.90854 0.91520 0.92170 0.93041 0.92588 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.31 71.24 0.73 -1.59 16 2 C 0.52 11.06 7.33 87.66 0.64 11.70 16 3 O -0.57 -15.75 13.30 -3.04 -0.04 -15.79 16 4 N -0.72 -15.61 4.62 -426.32 -1.97 -17.58 16 5 C 0.20 4.80 0.50 2.86 0.00 4.80 16 6 C -0.16 -3.96 7.80 71.98 0.56 -3.40 16 7 C 0.46 13.13 5.82 71.24 0.41 13.54 16 8 O -0.51 -15.47 11.83 21.96 0.26 -15.21 16 9 O -0.35 -11.10 9.45 -51.44 -0.49 -11.58 16 10 C 0.14 4.59 5.58 71.24 0.40 4.99 16 11 C -0.22 -8.80 5.54 -19.67 -0.11 -8.91 16 12 C -0.08 -3.71 9.67 22.22 0.21 -3.50 16 13 C -0.19 -9.39 8.66 22.73 0.20 -9.19 16 14 C 0.09 4.56 5.54 -21.29 -0.12 4.44 16 15 C -0.50 -25.68 9.06 23.46 0.21 -25.47 16 16 H 0.08 3.89 7.87 -2.92 -0.02 3.87 16 17 C 0.03 1.61 5.26 85.26 0.45 2.06 16 18 N -0.83 -42.09 10.86 21.83 0.24 -41.85 16 19 Si 0.98 36.90 29.57 68.60 2.03 38.93 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 23 C -0.24 -10.87 9.80 22.73 0.22 -10.65 16 24 C -0.07 -2.62 9.67 22.22 0.21 -2.40 16 25 C -0.09 -2.06 2.19 -10.79 -0.02 -2.09 16 26 C -0.16 -3.54 8.43 71.98 0.61 -2.93 16 27 C -0.15 -3.28 8.74 71.98 0.63 -2.65 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.42 8.41 7.96 -92.71 -0.74 7.67 16 32 H 0.09 2.32 6.12 -2.39 -0.01 2.31 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.85 6.33 -2.38 -0.02 1.84 16 35 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.07 2.19 8.07 -2.39 -0.02 2.18 16 37 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 38 H 0.10 5.47 6.25 -2.91 -0.02 5.45 16 39 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 40 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.10 2.40 6.08 -2.39 -0.01 2.39 16 43 H 0.07 1.85 5.37 -2.39 -0.01 1.84 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.24 6.33 -2.38 -0.02 1.22 16 46 H 0.05 1.27 5.81 -2.39 -0.01 1.26 16 47 H 0.06 1.14 7.92 -2.39 -0.02 1.12 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -60.05 384.34 5.52 -54.53 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.24 Total: 39.80 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 5.25 Total: -31.25 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -1.73 Total: -59.43 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.27 Total: -42.59 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -60.05 5.52 -54.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904179172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.518 kcal (2) G-P(sol) polarization free energy of solvation -60.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds