Wall clock time and date at job start Tue Mar 31 2020 18:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46728 * 2 1 4 4 C 1.52999 * 109.47351 * 240.00086 * 2 1 3 5 5 C 1.52999 * 109.47328 * 119.99462 * 2 1 3 6 6 C 1.50711 * 109.46685 * 65.60215 * 5 2 1 7 7 C 1.37966 * 120.07224 * 269.76653 * 6 5 2 8 8 C 1.38347 * 120.14410 * 180.25665 * 7 6 5 9 9 C 1.38392 * 120.30559 * 359.44666 * 8 7 6 10 10 C 1.37927 * 120.14747 * 0.55392 * 9 8 7 11 11 C 1.39603 * 120.07514 * 89.74817 * 6 5 2 12 12 C 1.47721 * 120.15348 * 359.97438 * 11 6 5 13 13 O 1.21478 * 119.99880 * 6.00339 * 12 11 6 14 14 O 1.34709 * 120.00577 * 186.00182 * 12 11 6 15 15 C 1.45201 * 117.00572 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47131 * 180.02562 * 15 14 12 17 17 O 1.21278 * 119.99972 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.46492 * 120.00546 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47598 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99846 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47419 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47291 * 120.00157 * 24 22 20 27 27 H 1.48497 * 109.47033 * 239.99942 * 24 22 20 28 28 H 1.08994 * 109.47058 * 299.99347 * 1 2 3 29 29 H 1.08999 * 109.46996 * 60.00458 * 1 2 3 30 30 H 1.09000 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46747 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46577 * 299.99757 * 3 2 1 33 33 H 1.09000 * 109.46911 * 59.99800 * 3 2 1 34 34 H 1.08995 * 109.46921 * 293.21994 * 4 2 1 35 35 H 1.09004 * 109.47201 * 53.21823 * 4 2 1 36 36 H 1.08997 * 109.46993 * 173.21615 * 4 2 1 37 37 H 1.08996 * 109.47426 * 305.60490 * 5 2 1 38 38 H 1.09001 * 109.47302 * 185.59569 * 5 2 1 39 39 H 1.07999 * 119.92896 * 359.97438 * 7 6 5 40 40 H 1.08006 * 119.84612 * 179.72875 * 8 7 6 41 41 H 1.07993 * 119.92249 * 180.30584 * 9 8 7 42 42 H 1.07995 * 120.07100 * 179.74876 * 10 9 8 43 43 H 1.08992 * 109.47089 * 300.00485 * 15 14 12 44 44 H 1.08998 * 109.46373 * 60.00273 * 15 14 12 45 45 H 0.97005 * 119.99922 * 359.97438 * 18 16 15 46 46 H 1.08998 * 109.47203 * 300.00406 * 19 18 16 47 47 H 1.09002 * 109.47054 * 59.99760 * 19 18 16 48 48 H 0.97001 * 119.99830 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 6 1.6541 -2.1764 1.1819 7 6 0.4541 -2.5988 1.7158 8 6 0.1008 -3.9352 1.6595 9 6 0.9417 -4.8552 1.0581 10 6 2.1443 -4.4465 0.5204 11 6 2.5099 -3.1000 0.5789 12 6 3.7959 -2.6548 0.0043 13 8 4.1614 -1.5056 0.1511 14 8 4.5634 -3.5231 -0.6825 15 6 5.8136 -3.0162 -1.2194 16 6 6.5310 -4.1213 -1.9509 17 8 6.0369 -5.2271 -2.0141 18 7 7.7215 -3.8808 -2.5350 19 6 8.4192 -4.9552 -3.2457 20 6 9.7167 -4.4291 -3.8030 21 1 9.9942 -3.3976 -3.6433 22 6 10.5497 -5.2645 -4.5166 23 7 10.2115 -6.5204 -4.7114 24 14 12.1583 -4.6125 -5.2068 25 1 12.3045 -3.1781 -4.8510 26 1 13.2913 -5.3822 -4.6330 27 1 12.1585 -4.7590 -6.6845 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.7792 -1.7779 -1.1906 35 1 1.5811 -0.2822 -2.1351 36 1 3.1233 -0.6173 -1.3119 37 1 1.5972 -0.2685 2.1364 38 1 3.1255 -0.6351 1.3008 39 1 -0.2088 -1.8854 2.1827 40 1 -0.8378 -4.2613 2.0829 41 1 0.6574 -5.8961 1.0132 42 1 2.8014 -5.1661 0.0550 43 1 5.6076 -2.1981 -1.9095 44 1 6.4391 -2.6543 -0.4034 45 1 8.1165 -2.9963 -2.4848 46 1 8.6249 -5.7735 -2.5556 47 1 7.7937 -5.3169 -4.0619 48 1 10.7974 -7.1080 -5.2138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909755951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:55 Heat of formation + Delta-G solvation = -106.218513 kcal Electronic energy + Delta-G solvation = -28647.687972 eV Core-core repulsion = 24667.480079 eV Total energy + Delta-G solvation = -3980.207892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19410 -39.50091 -38.52640 -37.38521 -36.19422 -34.26280 -32.43052 -31.92902 -31.75034 -29.18677 -27.47854 -27.39172 -27.05012 -26.50899 -24.13806 -22.67106 -22.03552 -20.95428 -19.95218 -19.08591 -18.03710 -17.46392 -16.73782 -16.65080 -16.06616 -15.66307 -15.45656 -15.25504 -15.09762 -14.65162 -14.51911 -14.40372 -14.15491 -14.02689 -13.28201 -13.13575 -12.98889 -12.64156 -12.58026 -12.55232 -12.23111 -12.04444 -12.00303 -11.91369 -11.84290 -11.64450 -11.45180 -11.01013 -10.98802 -10.93654 -10.89832 -10.68011 -10.53467 -10.35874 -9.89687 -9.43654 -9.24170 -9.19258 -8.94896 -8.80040 -8.00369 -6.21031 -4.28309 0.49407 1.09738 2.37986 2.41334 3.16271 3.21510 3.28810 3.31767 3.52590 3.95528 4.31584 4.42196 4.50795 4.65572 4.69020 4.74756 4.75186 4.92536 5.04072 5.09180 5.15273 5.21973 5.22470 5.32801 5.39000 5.42041 5.43281 5.55664 5.60824 5.64205 5.71287 5.79212 5.83326 5.85434 5.91623 6.04731 6.11957 6.16362 6.18944 6.21899 6.27935 6.55792 6.67363 7.21273 7.29403 7.44341 7.58422 7.69831 7.90581 8.48461 8.69864 8.94911 9.38174 10.89166 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002301 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.386775 B =12164.889089 C =13276.957584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.138 4.138 4 C -0.155 4.155 5 C -0.104 4.104 6 C -0.007 4.007 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.140 4.140 10 C -0.057 4.057 11 C -0.124 4.124 12 C 0.508 3.492 13 O -0.495 6.495 14 O -0.325 6.325 15 C 0.050 3.950 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.706 5.706 19 C 0.251 3.749 20 C -0.544 4.544 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.393 0.607 46 H 0.029 0.971 47 H 0.029 0.971 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.243 12.204 13.438 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 C -0.195 4.195 4 C -0.212 4.212 5 C -0.141 4.141 6 C -0.008 4.008 7 C -0.153 4.153 8 C -0.102 4.102 9 C -0.158 4.158 10 C -0.075 4.075 11 C -0.125 4.125 12 C 0.354 3.646 13 O -0.386 6.386 14 O -0.240 6.240 15 C -0.027 4.027 16 C 0.282 3.718 17 O -0.412 6.412 18 N -0.356 5.356 19 C 0.131 3.869 20 C -0.583 4.583 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.226 0.774 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.373 11.532 13.300 27.689 hybrid contribution 1.088 0.686 -0.444 1.361 sum -20.285 12.218 12.856 26.945 Atomic orbital electron populations 1.22006 0.95132 1.01849 1.01370 1.20304 0.94838 0.95240 0.94760 1.21829 1.01584 0.94862 1.01220 1.22267 1.02521 0.99963 0.96410 1.21371 1.05867 0.89310 0.97537 1.19957 0.92423 0.95635 0.92738 1.21007 0.96330 0.96070 1.01920 1.21425 0.99142 0.93153 0.96442 1.21167 0.94552 1.00290 0.99797 1.21638 0.96207 0.94761 0.94939 1.18929 0.93322 0.94695 1.05589 1.21223 0.84385 0.83341 0.75650 1.90658 1.72642 1.18959 1.56344 1.86611 1.31561 1.41804 1.63982 1.22869 0.83571 0.96969 0.99327 1.19882 0.82501 0.88772 0.80605 1.90705 1.66271 1.24022 1.60160 1.46360 1.19264 1.16115 1.53905 1.19177 0.91002 0.85138 0.91606 1.21241 1.03977 0.97433 1.35610 0.91717 1.24957 0.98591 0.94722 0.95754 1.69982 1.37574 1.04866 1.39761 0.86338 0.82699 0.78995 0.78748 1.19598 1.20765 1.20760 0.92884 0.92874 0.92422 0.92093 0.92856 0.92978 0.92948 0.93323 0.90947 0.91496 0.86185 0.85295 0.85536 0.85151 0.83908 0.88473 0.88432 0.77424 0.95258 0.95257 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.07 37.16 0.30 -0.87 16 2 C -0.05 -0.48 0.79 -154.50 -0.12 -0.60 16 3 C -0.14 -1.19 8.47 37.16 0.31 -0.88 16 4 C -0.15 -1.72 6.85 37.16 0.25 -1.47 16 5 C -0.10 -1.02 4.06 -27.88 -0.11 -1.13 16 6 C -0.01 -0.07 4.02 -104.21 -0.42 -0.49 16 7 C -0.14 -1.12 7.98 -39.64 -0.32 -1.43 16 8 C -0.08 -0.64 10.04 -39.48 -0.40 -1.04 16 9 C -0.14 -1.24 10.03 -39.64 -0.40 -1.63 16 10 C -0.06 -0.64 9.62 -39.17 -0.38 -1.02 16 11 C -0.12 -1.49 4.57 -104.99 -0.48 -1.97 16 12 C 0.51 6.97 6.37 34.61 0.22 7.19 16 13 O -0.50 -6.81 10.33 -19.25 -0.20 -7.01 16 14 O -0.32 -5.09 9.03 -47.20 -0.43 -5.52 16 15 C 0.05 0.75 5.95 36.01 0.21 0.96 16 16 C 0.50 9.87 7.91 -10.99 -0.09 9.79 16 17 O -0.53 -12.87 16.50 -14.10 -0.23 -13.10 16 18 N -0.71 -14.43 5.55 -61.48 -0.34 -14.77 16 19 C 0.25 6.51 5.43 -5.20 -0.03 6.49 16 20 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 21 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 24 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 6.29 -51.93 -0.33 0.15 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.63 5.41 -51.93 -0.28 0.35 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.91 5.78 -51.93 -0.30 0.61 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.12 1.40 5.03 -52.20 -0.26 1.13 16 39 H 0.13 0.81 8.05 -52.49 -0.42 0.38 16 40 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.14 1.69 7.63 -52.49 -0.40 1.29 16 43 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -32.07 388.47 -8.84 -40.91 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.36 Total: 4.33 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.85 Total: -1.27 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.40 Total: -39.77 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.86 Total: -25.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.07 -8.84 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909755951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.310 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds