Wall clock time and date at job start Tue Mar 31 2020 18:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46728 * 2 1 4 4 C 1.52999 * 109.47351 * 240.00086 * 2 1 3 5 5 C 1.52999 * 109.47328 * 119.99462 * 2 1 3 6 6 C 1.50711 * 109.46685 * 65.60215 * 5 2 1 7 7 C 1.37966 * 120.07224 * 269.76653 * 6 5 2 8 8 C 1.38347 * 120.14410 * 180.25665 * 7 6 5 9 9 C 1.38392 * 120.30559 * 359.44666 * 8 7 6 10 10 C 1.37927 * 120.14747 * 0.55392 * 9 8 7 11 11 C 1.39603 * 120.07514 * 89.74817 * 6 5 2 12 12 C 1.47721 * 120.15348 * 359.97438 * 11 6 5 13 13 O 1.21478 * 119.99880 * 6.00339 * 12 11 6 14 14 O 1.34709 * 120.00577 * 186.00182 * 12 11 6 15 15 C 1.45201 * 117.00572 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47131 * 180.02562 * 15 14 12 17 17 O 1.21278 * 119.99972 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.46492 * 120.00546 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47598 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99846 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47419 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47291 * 120.00157 * 24 22 20 27 27 H 1.48497 * 109.47033 * 239.99942 * 24 22 20 28 28 H 1.08994 * 109.47058 * 299.99347 * 1 2 3 29 29 H 1.08999 * 109.46996 * 60.00458 * 1 2 3 30 30 H 1.09000 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46747 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46577 * 299.99757 * 3 2 1 33 33 H 1.09000 * 109.46911 * 59.99800 * 3 2 1 34 34 H 1.08995 * 109.46921 * 293.21994 * 4 2 1 35 35 H 1.09004 * 109.47201 * 53.21823 * 4 2 1 36 36 H 1.08997 * 109.46993 * 173.21615 * 4 2 1 37 37 H 1.08996 * 109.47426 * 305.60490 * 5 2 1 38 38 H 1.09001 * 109.47302 * 185.59569 * 5 2 1 39 39 H 1.07999 * 119.92896 * 359.97438 * 7 6 5 40 40 H 1.08006 * 119.84612 * 179.72875 * 8 7 6 41 41 H 1.07993 * 119.92249 * 180.30584 * 9 8 7 42 42 H 1.07995 * 120.07100 * 179.74876 * 10 9 8 43 43 H 1.08992 * 109.47089 * 300.00485 * 15 14 12 44 44 H 1.08998 * 109.46373 * 60.00273 * 15 14 12 45 45 H 0.97005 * 119.99922 * 359.97438 * 18 16 15 46 46 H 1.08998 * 109.47203 * 300.00406 * 19 18 16 47 47 H 1.09002 * 109.47054 * 59.99760 * 19 18 16 48 48 H 0.97001 * 119.99830 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 6 1.6541 -2.1764 1.1819 7 6 0.4541 -2.5988 1.7158 8 6 0.1008 -3.9352 1.6595 9 6 0.9417 -4.8552 1.0581 10 6 2.1443 -4.4465 0.5204 11 6 2.5099 -3.1000 0.5789 12 6 3.7959 -2.6548 0.0043 13 8 4.1614 -1.5056 0.1511 14 8 4.5634 -3.5231 -0.6825 15 6 5.8136 -3.0162 -1.2194 16 6 6.5310 -4.1213 -1.9509 17 8 6.0369 -5.2271 -2.0141 18 7 7.7215 -3.8808 -2.5350 19 6 8.4192 -4.9552 -3.2457 20 6 9.7167 -4.4291 -3.8030 21 1 9.9942 -3.3976 -3.6433 22 6 10.5497 -5.2645 -4.5166 23 7 10.2115 -6.5204 -4.7114 24 14 12.1583 -4.6125 -5.2068 25 1 12.3045 -3.1781 -4.8510 26 1 13.2913 -5.3822 -4.6330 27 1 12.1585 -4.7590 -6.6845 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.7792 -1.7779 -1.1906 35 1 1.5811 -0.2822 -2.1351 36 1 3.1233 -0.6173 -1.3119 37 1 1.5972 -0.2685 2.1364 38 1 3.1255 -0.6351 1.3008 39 1 -0.2088 -1.8854 2.1827 40 1 -0.8378 -4.2613 2.0829 41 1 0.6574 -5.8961 1.0132 42 1 2.8014 -5.1661 0.0550 43 1 5.6076 -2.1981 -1.9095 44 1 6.4391 -2.6543 -0.4034 45 1 8.1165 -2.9963 -2.4848 46 1 8.6249 -5.7735 -2.5556 47 1 7.7937 -5.3169 -4.0619 48 1 10.7974 -7.1080 -5.2138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909755951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:54 Heat of formation + Delta-G solvation = -124.227071 kcal Electronic energy + Delta-G solvation = -28648.468881 eV Core-core repulsion = 24667.480079 eV Total energy + Delta-G solvation = -3980.988802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.16232 -40.75356 -39.86223 -38.17208 -37.27498 -36.19832 -34.43316 -32.68015 -32.52918 -30.73386 -28.61678 -28.22251 -28.06868 -27.52407 -25.17988 -24.42856 -22.91068 -21.86744 -21.66528 -19.88084 -19.24102 -18.89556 -18.00836 -17.87856 -17.32561 -16.99462 -16.74247 -16.40852 -16.22847 -16.07129 -15.67512 -15.30963 -15.09453 -14.94199 -14.62049 -14.47473 -14.11014 -13.92626 -13.78535 -13.65265 -13.36596 -13.30385 -12.97470 -12.92310 -12.77639 -12.76499 -12.59445 -12.51801 -12.23640 -12.18801 -11.88451 -11.64665 -11.53095 -11.48252 -11.40075 -10.97642 -10.84309 -10.75129 -9.98366 -9.94824 -9.67558 -8.30917 -6.47402 -0.31543 0.38046 1.22813 1.43930 1.44156 1.46267 1.54037 1.58032 2.32932 2.55965 2.77063 3.04477 3.56157 3.70515 3.71515 3.86256 3.97227 4.00219 4.03701 4.05630 4.11446 4.23832 4.39718 4.46266 4.67669 4.70600 4.75378 4.81990 4.89732 4.94056 4.94783 5.02944 5.06795 5.09373 5.11686 5.18054 5.20207 5.32273 5.35750 5.40433 5.42699 5.46439 5.48052 5.51976 5.61486 5.76323 5.80784 5.94174 6.59876 6.62766 6.77155 7.18967 7.33889 8.81502 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002301 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.386775 B =12164.889089 C =13276.957584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.135 4.135 4 C -0.153 4.153 5 C -0.102 4.102 6 C -0.013 4.013 7 C -0.131 4.131 8 C -0.073 4.073 9 C -0.142 4.142 10 C -0.077 4.077 11 C -0.147 4.147 12 C 0.506 3.494 13 O -0.499 6.499 14 O -0.347 6.347 15 C 0.063 3.937 16 C 0.499 3.501 17 O -0.583 6.583 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.555 4.555 21 H 0.086 0.914 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.985 3.015 25 H -0.253 1.253 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.412 0.588 46 H -0.008 1.008 47 H -0.008 1.008 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.606 14.722 14.802 30.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 C -0.192 4.192 4 C -0.210 4.210 5 C -0.138 4.138 6 C -0.013 4.013 7 C -0.148 4.148 8 C -0.090 4.090 9 C -0.159 4.159 10 C -0.096 4.096 11 C -0.148 4.148 12 C 0.353 3.647 13 O -0.390 6.390 14 O -0.263 6.263 15 C -0.014 4.014 16 C 0.285 3.715 17 O -0.464 6.464 18 N -0.350 5.350 19 C 0.144 3.856 20 C -0.593 4.593 21 H 0.104 0.896 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.808 3.192 25 H -0.176 1.176 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.175 0.825 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.249 0.751 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.744 14.112 14.688 30.531 hybrid contribution 1.395 -0.133 -0.819 1.623 sum -21.349 13.978 13.869 29.044 Atomic orbital electron populations 1.21964 0.93613 1.02009 1.02331 1.20314 0.96011 0.95207 0.93537 1.21803 1.00672 0.94612 1.02152 1.22234 1.01381 0.99562 0.97787 1.21312 1.04639 0.89359 0.98495 1.20109 0.92960 0.95496 0.92770 1.21353 0.95621 0.96991 1.00884 1.21835 0.99818 0.92578 0.94798 1.21435 0.93649 1.01710 0.99144 1.21611 0.97355 0.94349 0.96268 1.19000 0.93092 0.95507 1.07205 1.21615 0.84712 0.83112 0.75286 1.90664 1.72858 1.18869 1.56565 1.86607 1.31891 1.43109 1.64732 1.22719 0.83789 0.94708 1.00205 1.20680 0.81865 0.89294 0.79639 1.90680 1.67350 1.26550 1.61778 1.46033 1.19560 1.15816 1.53547 1.18631 0.91160 0.85810 0.89987 1.21631 1.03879 0.98438 1.35359 0.89599 1.26060 1.02761 0.94798 0.95974 1.70139 1.39362 1.06591 1.40783 0.85101 0.77258 0.79118 0.77681 1.17620 1.20483 1.20482 0.91095 0.92778 0.92617 0.93528 0.92500 0.91453 0.94155 0.93056 0.92767 0.89472 0.88354 0.82500 0.82025 0.83316 0.85898 0.85948 0.85767 0.75123 0.98975 0.99006 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.07 71.98 0.58 -1.30 16 2 C -0.05 -0.87 0.79 -52.18 -0.04 -0.91 16 3 C -0.14 -2.13 8.47 71.98 0.61 -1.52 16 4 C -0.15 -3.37 6.85 71.98 0.49 -2.88 16 5 C -0.10 -1.82 4.06 29.85 0.12 -1.70 16 6 C -0.01 -0.25 4.02 -19.60 -0.08 -0.33 16 7 C -0.13 -1.75 7.98 22.23 0.18 -1.58 16 8 C -0.07 -0.88 10.04 22.33 0.22 -0.65 16 9 C -0.14 -2.30 10.03 22.23 0.22 -2.08 16 10 C -0.08 -1.78 9.62 22.54 0.22 -1.56 16 11 C -0.15 -3.56 4.57 -20.10 -0.09 -3.65 16 12 C 0.51 14.25 6.37 70.33 0.45 14.70 16 13 O -0.50 -13.82 10.33 19.91 0.21 -13.62 16 14 O -0.35 -11.33 9.03 -49.80 -0.45 -11.78 16 15 C 0.06 1.87 5.95 71.24 0.42 2.29 16 16 C 0.50 20.43 7.91 87.66 0.69 21.12 16 17 O -0.58 -29.78 16.50 15.78 0.26 -29.52 16 18 N -0.70 -29.18 5.55 -466.82 -2.59 -31.77 16 19 C 0.27 14.50 5.43 85.63 0.46 14.96 16 20 C -0.56 -29.83 9.28 25.60 0.24 -29.60 16 21 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 22 C 0.00 0.21 5.46 84.66 0.46 0.67 16 23 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 24 Si 0.99 42.04 29.54 68.60 2.03 44.07 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.76 6.29 -2.39 -0.02 0.75 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 0.98 5.41 -2.39 -0.01 0.96 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.05 1.38 5.78 -2.39 -0.01 1.36 16 37 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.10 2.24 5.03 -6.71 -0.03 2.20 16 39 H 0.16 1.23 8.05 -2.91 -0.02 1.20 16 40 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.12 3.21 7.63 -2.91 -0.02 3.19 16 43 H 0.12 3.05 8.14 -2.39 -0.02 3.04 16 44 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.41 13.89 8.32 -92.70 -0.77 13.11 16 46 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -73.60 388.47 5.08 -68.52 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.17 Total: 23.60 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.17 Total: 6.00 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.30 Total: -87.27 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: 0.02 Total: -54.92 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -73.60 5.08 -68.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909755951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.706 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds