Wall clock time and date at job start Tue Mar 31 2020 17:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.87457 * 2 1 4 4 O 1.42908 * 109.46967 * 300.70203 * 3 2 1 5 5 C 1.54323 * 109.88400 * 238.98251 * 2 1 3 6 6 C 1.55549 * 102.76150 * 262.74406 * 5 2 1 7 7 H 1.09000 * 111.06127 * 82.57441 * 6 5 2 8 8 O 1.42893 * 110.96549 * 206.39813 * 6 5 2 9 9 C 1.54911 * 101.59642 * 324.46672 * 6 5 2 10 10 N 1.47022 * 109.88200 * 121.01457 * 2 1 3 11 11 C 1.34773 * 125.64746 * 300.51153 * 10 2 1 12 12 O 1.21277 * 120.00310 * 0.02562 * 11 10 2 13 13 C 1.50699 * 119.99855 * 180.02562 * 11 10 2 14 14 C 1.52999 * 109.47367 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47270 * 305.00134 * 14 13 11 16 16 C 1.50703 * 109.47270 * 65.00087 * 14 13 11 17 17 H 1.07997 * 119.99774 * 234.68267 * 16 14 13 18 18 C 1.37878 * 119.99745 * 54.67489 * 16 14 13 19 19 N 1.31513 * 120.00220 * 4.96981 * 18 16 14 20 20 Si 1.86795 * 119.99856 * 184.96336 * 18 16 14 21 21 H 1.48502 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47180 * 120.00648 * 20 18 16 23 23 H 1.48499 * 109.47073 * 240.00278 * 20 18 16 24 24 C 1.50697 * 109.47422 * 185.00226 * 14 13 11 25 25 C 1.38243 * 120.00316 * 151.44159 * 24 14 13 26 26 C 1.38232 * 119.99825 * 179.74470 * 25 24 14 27 27 C 1.38231 * 120.00157 * 0.52412 * 26 25 24 28 28 C 1.38232 * 120.00423 * 359.75374 * 27 26 25 29 29 C 1.38233 * 119.99987 * 331.71470 * 24 14 13 30 30 H 1.08997 * 109.47275 * 59.30350 * 1 2 3 31 31 H 1.09006 * 109.46905 * 179.30268 * 1 2 3 32 32 H 1.08995 * 109.47368 * 299.29777 * 1 2 3 33 33 H 1.08998 * 109.47137 * 60.69771 * 3 2 1 34 34 H 1.08990 * 109.47355 * 180.70138 * 3 2 1 35 35 H 0.96698 * 113.99825 * 179.97438 * 4 3 2 36 36 H 1.09007 * 110.71801 * 21.14051 * 5 2 1 37 37 H 1.08998 * 110.72275 * 144.40703 * 5 2 1 38 38 H 0.96707 * 114.00041 * 173.64722 * 8 6 5 39 39 H 1.09002 * 110.36388 * 278.20756 * 9 6 5 40 40 H 1.08996 * 110.36395 * 155.88164 * 9 6 5 41 41 H 1.09003 * 109.47603 * 300.00154 * 13 11 10 42 42 H 1.09009 * 109.47629 * 60.00102 * 13 11 10 43 43 H 0.96996 * 119.99954 * 179.97438 * 19 18 16 44 44 H 1.07999 * 119.99277 * 359.97438 * 25 24 14 45 45 H 1.08000 * 119.99521 * 180.29522 * 26 25 24 46 46 H 1.08006 * 119.99976 * 179.77008 * 27 26 25 47 47 H 1.07997 * 120.00415 * 179.97438 * 28 27 26 48 48 H 1.08001 * 119.99847 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 8 1.5651 2.1207 -1.1585 5 6 2.0549 -0.7478 -1.2437 6 6 2.3519 -2.1705 -0.6893 7 1 1.4457 -2.7752 -0.6564 8 8 3.3681 -2.8170 -1.4582 9 6 2.8569 -1.8487 0.7394 10 7 2.0300 -0.7124 1.1849 11 6 1.7742 -0.3818 2.4662 12 8 1.0763 0.5778 2.7172 13 6 2.3555 -1.2044 3.5871 14 6 1.9144 -0.6200 4.9305 15 1 2.1900 0.4336 4.9765 16 6 0.4200 -0.7549 5.0706 17 1 -0.1835 0.1161 5.2791 18 6 -0.1766 -1.9902 4.9324 19 7 0.5651 -3.0649 4.7759 20 14 -2.0384 -2.1373 4.9678 21 1 -2.6379 -0.7915 5.1539 22 1 -2.5136 -2.7175 3.6860 23 1 -2.4440 -3.0200 6.0910 24 6 2.5933 -1.3661 6.0501 25 6 2.8518 -0.7281 7.2490 26 6 3.4697 -1.4141 8.2777 27 6 3.8389 -2.7348 8.1040 28 6 3.5857 -3.3712 6.9033 29 6 2.9626 -2.6868 5.8764 30 1 -0.3633 0.5246 -0.8836 31 1 -0.3633 -1.0277 -0.0125 32 1 -0.3634 0.5029 0.8962 33 1 1.7007 1.9515 0.8962 34 1 3.1399 1.4313 -0.0126 35 1 1.8559 3.0406 -1.2240 36 1 1.2918 -0.7862 -2.0212 37 1 2.9656 -0.2809 -1.6187 38 1 3.6565 -3.6654 -1.0947 39 1 3.9092 -1.5656 0.7150 40 1 2.7088 -2.7060 1.3961 41 1 2.0020 -2.2322 3.5047 42 1 3.4436 -1.1884 3.5232 43 1 0.1453 -3.9339 4.6790 44 1 2.5675 0.3051 7.3829 45 1 3.6673 -0.9171 9.2160 46 1 4.3251 -3.2697 8.9065 47 1 3.8745 -4.4029 6.7674 48 1 2.7650 -3.1838 4.9381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912658090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:06 Heat of formation + Delta-G solvation = -99.922284 kcal Electronic energy + Delta-G solvation = -30410.131807 eV Core-core repulsion = 26430.196939 eV Total energy + Delta-G solvation = -3979.934868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.24923 -38.44097 -37.47805 -36.79576 -35.29583 -34.22140 -31.85644 -31.01409 -29.90978 -29.82198 -28.33431 -26.43321 -25.93890 -25.10309 -22.89015 -21.96298 -21.45008 -20.57012 -19.37789 -18.07613 -17.47544 -17.26116 -16.58403 -16.11671 -15.56859 -15.22665 -15.08818 -14.79355 -14.50793 -13.98848 -13.93641 -13.82348 -13.58881 -13.49658 -13.02982 -12.79923 -12.48880 -12.39264 -12.26368 -12.07573 -11.86815 -11.54539 -11.49204 -11.39397 -11.08367 -10.97274 -10.90645 -10.80123 -10.58132 -10.43957 -10.20185 -10.11418 -9.96846 -9.84353 -9.32694 -9.20029 -8.78709 -8.44652 -8.21784 -7.83150 -7.46978 -6.01485 -4.10951 2.46939 2.55757 3.24222 3.26922 3.35113 3.42434 3.54184 4.09702 4.40520 4.46305 4.53370 4.71133 4.94649 4.99371 5.17544 5.21476 5.29691 5.35848 5.56794 5.68717 5.76174 5.79081 5.86552 5.88095 5.92831 5.96119 5.99184 6.00977 6.12081 6.25569 6.32199 6.40768 6.53355 6.62310 6.67996 6.74550 6.86887 7.10831 7.13192 7.23404 7.42427 7.50668 7.51033 7.63751 7.66015 7.89944 8.02822 8.14298 8.14969 8.30734 8.86018 9.08164 9.52497 10.92524 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004272 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.869338 B = 6552.221998 C = 7132.431104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.171 3.829 3 C 0.073 3.927 4 O -0.570 6.570 5 C -0.104 4.104 6 C 0.087 3.913 7 H 0.075 0.925 8 O -0.559 6.559 9 C 0.075 3.925 10 N -0.620 5.620 11 C 0.543 3.457 12 O -0.517 6.517 13 C -0.133 4.133 14 C 0.087 3.913 15 H 0.037 0.963 16 C -0.468 4.468 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.027 4.027 25 C -0.132 4.132 26 C -0.141 4.141 27 C -0.154 4.154 28 C -0.143 4.143 29 C -0.068 4.068 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.377 0.623 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.380 0.620 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 0.576 -8.786 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.085 3.915 3 C -0.006 4.006 4 O -0.374 6.374 5 C -0.142 4.142 6 C 0.027 3.973 7 H 0.092 0.908 8 O -0.364 6.364 9 C -0.049 4.049 10 N -0.361 5.361 11 C 0.335 3.665 12 O -0.390 6.390 13 C -0.173 4.173 14 C 0.068 3.932 15 H 0.055 0.945 16 C -0.505 4.505 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.028 4.028 25 C -0.150 4.150 26 C -0.159 4.159 27 C -0.172 4.172 28 C -0.161 4.161 29 C -0.086 4.086 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.224 0.776 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.228 0.772 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.346 0.907 -9.034 11.077 hybrid contribution -0.809 -0.384 0.722 1.150 sum 5.536 0.523 -8.312 10.001 Atomic orbital electron populations 1.22082 0.93550 1.01949 1.03409 1.20669 0.95139 0.90661 0.85005 1.22496 0.96639 0.93028 0.88416 1.86396 1.76967 1.28792 1.45285 1.22677 1.02205 0.92770 0.96544 1.23115 0.90390 0.94113 0.89684 0.90751 1.86492 1.58067 1.38983 1.52860 1.22900 0.95449 0.90727 0.95857 1.48681 1.52564 1.29926 1.04885 1.20978 0.79686 0.84749 0.81130 1.90603 1.37141 1.28882 1.82398 1.21940 0.97326 1.04073 0.93946 1.17652 0.95084 0.93364 0.87084 0.94470 1.21011 0.90338 0.93657 1.45538 0.92210 1.24872 0.97977 0.95753 0.95325 1.69679 1.33976 0.98289 1.51012 0.86543 0.86162 0.78120 0.77362 1.19788 1.21172 1.21246 1.20320 0.91665 0.94811 0.95978 1.20894 1.00646 0.99495 0.93938 1.20798 1.01956 0.94997 0.98193 1.20767 1.03722 0.95279 0.97429 1.21044 1.01609 0.98906 0.94566 1.21335 0.93633 0.93848 0.99828 0.91607 0.92892 0.90560 0.91666 0.93998 0.77650 0.89669 0.89927 0.77200 0.91175 0.89754 0.84996 0.93014 0.93031 0.87678 0.88089 0.88293 0.88094 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.24 37.16 0.31 -2.19 16 2 C 0.17 2.61 0.65 -130.84 -0.08 2.53 16 3 C 0.07 1.06 5.83 37.16 0.22 1.28 16 4 O -0.57 -7.23 12.68 -35.23 -0.45 -7.67 16 5 C -0.10 -1.36 5.51 -24.68 -0.14 -1.49 16 6 C 0.09 1.05 4.44 -24.37 -0.11 0.94 16 7 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 8 O -0.56 -6.07 13.47 -35.23 -0.47 -6.55 16 9 C 0.07 1.00 6.42 -2.53 -0.02 0.99 16 10 N -0.62 -10.40 2.82 -155.81 -0.44 -10.84 16 11 C 0.54 11.18 7.17 -10.99 -0.08 11.11 16 12 O -0.52 -12.18 12.55 5.56 0.07 -12.11 16 13 C -0.13 -2.76 3.08 -27.88 -0.09 -2.85 16 14 C 0.09 2.05 1.97 -92.92 -0.18 1.86 16 15 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 16 C -0.47 -12.28 7.27 -34.44 -0.25 -12.53 16 17 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 18 C 0.06 1.55 5.12 -17.82 -0.09 1.46 16 19 N -0.89 -22.10 7.99 55.43 0.44 -21.66 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 25 C -0.13 -2.76 9.71 -39.58 -0.38 -3.15 16 26 C -0.14 -2.68 10.05 -39.59 -0.40 -3.08 16 27 C -0.15 -2.84 10.05 -39.59 -0.40 -3.24 16 28 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 29 C -0.07 -1.45 7.45 -39.58 -0.29 -1.75 16 30 H 0.07 0.98 7.67 -51.93 -0.40 0.59 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.49 6.70 -51.93 -0.35 1.14 16 33 H 0.07 1.10 6.84 -51.93 -0.36 0.75 16 34 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 35 H 0.38 3.07 9.12 45.56 0.42 3.49 16 36 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 37 H 0.08 1.07 7.85 -51.93 -0.41 0.67 16 38 H 0.38 2.52 9.11 45.56 0.42 2.93 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.12 7.48 -51.93 -0.39 0.73 16 41 H 0.13 2.90 4.41 -51.93 -0.23 2.68 16 42 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 44 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 46 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 47 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 48 H 0.14 3.00 5.18 -52.49 -0.27 2.73 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -30.20 377.20 -8.79 -38.99 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.73 Total: 12.30 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.87 Total: -14.38 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.00 Total: -32.50 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.85 Total: -26.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.20 -8.79 -38.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912658090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.933 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds