Wall clock time and date at job start Tue Mar 31 2020 17:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.87457 * 2 1 4 4 O 1.42908 * 109.46967 * 300.70203 * 3 2 1 5 5 C 1.54323 * 109.88400 * 238.98251 * 2 1 3 6 6 C 1.55549 * 102.76150 * 262.74406 * 5 2 1 7 7 H 1.09000 * 111.06127 * 82.57441 * 6 5 2 8 8 O 1.42893 * 110.96549 * 206.39813 * 6 5 2 9 9 C 1.54911 * 101.59642 * 324.46672 * 6 5 2 10 10 N 1.47022 * 109.88200 * 121.01457 * 2 1 3 11 11 C 1.34773 * 125.64746 * 300.51153 * 10 2 1 12 12 O 1.21277 * 120.00310 * 0.02562 * 11 10 2 13 13 C 1.50699 * 119.99855 * 180.02562 * 11 10 2 14 14 C 1.52999 * 109.47367 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47270 * 305.00134 * 14 13 11 16 16 C 1.50703 * 109.47270 * 65.00087 * 14 13 11 17 17 H 1.07997 * 119.99774 * 234.68267 * 16 14 13 18 18 C 1.37878 * 119.99745 * 54.67489 * 16 14 13 19 19 N 1.31513 * 120.00220 * 4.96981 * 18 16 14 20 20 Si 1.86795 * 119.99856 * 184.96336 * 18 16 14 21 21 H 1.48502 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47180 * 120.00648 * 20 18 16 23 23 H 1.48499 * 109.47073 * 240.00278 * 20 18 16 24 24 C 1.50697 * 109.47422 * 185.00226 * 14 13 11 25 25 C 1.38243 * 120.00316 * 151.44159 * 24 14 13 26 26 C 1.38232 * 119.99825 * 179.74470 * 25 24 14 27 27 C 1.38231 * 120.00157 * 0.52412 * 26 25 24 28 28 C 1.38232 * 120.00423 * 359.75374 * 27 26 25 29 29 C 1.38233 * 119.99987 * 331.71470 * 24 14 13 30 30 H 1.08997 * 109.47275 * 59.30350 * 1 2 3 31 31 H 1.09006 * 109.46905 * 179.30268 * 1 2 3 32 32 H 1.08995 * 109.47368 * 299.29777 * 1 2 3 33 33 H 1.08998 * 109.47137 * 60.69771 * 3 2 1 34 34 H 1.08990 * 109.47355 * 180.70138 * 3 2 1 35 35 H 0.96698 * 113.99825 * 179.97438 * 4 3 2 36 36 H 1.09007 * 110.71801 * 21.14051 * 5 2 1 37 37 H 1.08998 * 110.72275 * 144.40703 * 5 2 1 38 38 H 0.96707 * 114.00041 * 173.64722 * 8 6 5 39 39 H 1.09002 * 110.36388 * 278.20756 * 9 6 5 40 40 H 1.08996 * 110.36395 * 155.88164 * 9 6 5 41 41 H 1.09003 * 109.47603 * 300.00154 * 13 11 10 42 42 H 1.09009 * 109.47629 * 60.00102 * 13 11 10 43 43 H 0.96996 * 119.99954 * 179.97438 * 19 18 16 44 44 H 1.07999 * 119.99277 * 359.97438 * 25 24 14 45 45 H 1.08000 * 119.99521 * 180.29522 * 26 25 24 46 46 H 1.08006 * 119.99976 * 179.77008 * 27 26 25 47 47 H 1.07997 * 120.00415 * 179.97438 * 28 27 26 48 48 H 1.08001 * 119.99847 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 8 1.5651 2.1207 -1.1585 5 6 2.0549 -0.7478 -1.2437 6 6 2.3519 -2.1705 -0.6893 7 1 1.4457 -2.7752 -0.6564 8 8 3.3681 -2.8170 -1.4582 9 6 2.8569 -1.8487 0.7394 10 7 2.0300 -0.7124 1.1849 11 6 1.7742 -0.3818 2.4662 12 8 1.0763 0.5778 2.7172 13 6 2.3555 -1.2044 3.5871 14 6 1.9144 -0.6200 4.9305 15 1 2.1900 0.4336 4.9765 16 6 0.4200 -0.7549 5.0706 17 1 -0.1835 0.1161 5.2791 18 6 -0.1766 -1.9902 4.9324 19 7 0.5651 -3.0649 4.7759 20 14 -2.0384 -2.1373 4.9678 21 1 -2.6379 -0.7915 5.1539 22 1 -2.5136 -2.7175 3.6860 23 1 -2.4440 -3.0200 6.0910 24 6 2.5933 -1.3661 6.0501 25 6 2.8518 -0.7281 7.2490 26 6 3.4697 -1.4141 8.2777 27 6 3.8389 -2.7348 8.1040 28 6 3.5857 -3.3712 6.9033 29 6 2.9626 -2.6868 5.8764 30 1 -0.3633 0.5246 -0.8836 31 1 -0.3633 -1.0277 -0.0125 32 1 -0.3634 0.5029 0.8962 33 1 1.7007 1.9515 0.8962 34 1 3.1399 1.4313 -0.0126 35 1 1.8559 3.0406 -1.2240 36 1 1.2918 -0.7862 -2.0212 37 1 2.9656 -0.2809 -1.6187 38 1 3.6565 -3.6654 -1.0947 39 1 3.9092 -1.5656 0.7150 40 1 2.7088 -2.7060 1.3961 41 1 2.0020 -2.2322 3.5047 42 1 3.4436 -1.1884 3.5232 43 1 0.1453 -3.9339 4.6790 44 1 2.5675 0.3051 7.3829 45 1 3.6673 -0.9171 9.2160 46 1 4.3251 -3.2697 8.9065 47 1 3.8745 -4.4029 6.7674 48 1 2.7650 -3.1838 4.9381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912658090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:05 Heat of formation + Delta-G solvation = -120.834081 kcal Electronic energy + Delta-G solvation = -30411.038611 eV Core-core repulsion = 26430.196939 eV Total energy + Delta-G solvation = -3980.841671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56351 -39.99185 -38.90113 -37.81186 -36.43488 -35.95911 -33.30393 -32.72823 -31.39914 -31.02250 -29.91909 -27.77734 -27.63587 -26.29971 -24.57137 -23.27236 -22.86531 -21.92724 -20.95158 -19.47040 -18.48896 -18.33879 -18.21067 -17.77743 -17.03990 -16.89929 -16.38259 -16.16833 -15.85481 -15.48141 -15.41421 -15.26114 -14.92979 -14.69054 -14.51277 -14.21238 -13.84126 -13.78381 -13.59918 -13.41375 -13.27192 -13.21626 -13.13763 -12.84363 -12.83453 -12.69648 -12.26422 -12.22175 -12.08666 -11.87193 -11.69407 -11.62447 -11.12737 -11.06828 -11.04096 -10.93299 -10.56118 -10.21479 -9.59315 -9.39642 -9.11869 -7.95740 -6.10719 0.89127 1.00438 1.32098 1.36770 1.46716 1.94120 1.98262 2.43486 3.14511 3.18495 3.33728 3.37795 3.47650 3.67525 3.89017 4.11680 4.13479 4.17094 4.31667 4.33716 4.42061 4.49770 4.52419 4.60990 4.64482 4.68968 4.73549 4.77877 4.83805 4.88397 4.91048 4.95409 5.07942 5.09548 5.14434 5.26439 5.34757 5.53779 5.61361 5.64094 5.68584 5.89057 5.94990 6.09418 6.35349 6.41704 6.58278 6.65808 6.80624 6.83306 6.86487 7.50297 7.53043 8.93445 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004272 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.869338 B = 6552.221998 C = 7132.431104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.163 3.837 3 C 0.083 3.917 4 O -0.573 6.573 5 C -0.096 4.096 6 C 0.101 3.899 7 H 0.077 0.923 8 O -0.562 6.562 9 C 0.070 3.930 10 N -0.618 5.618 11 C 0.537 3.463 12 O -0.558 6.558 13 C -0.120 4.120 14 C 0.089 3.911 15 H 0.014 0.986 16 C -0.487 4.487 17 H 0.025 0.975 18 C 0.038 3.962 19 N -0.882 5.882 20 Si 0.924 3.076 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.051 4.051 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.079 4.079 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.397 0.603 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.262 0.738 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.136 0.864 47 H 0.127 0.873 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -1.392 -9.374 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.078 3.922 3 C 0.004 3.996 4 O -0.380 6.380 5 C -0.134 4.134 6 C 0.041 3.959 7 H 0.095 0.905 8 O -0.370 6.370 9 C -0.053 4.053 10 N -0.356 5.356 11 C 0.329 3.671 12 O -0.435 6.435 13 C -0.160 4.160 14 C 0.069 3.931 15 H 0.032 0.968 16 C -0.525 4.525 17 H 0.044 0.956 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.753 3.247 21 H -0.215 1.215 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.052 4.052 25 C -0.170 4.170 26 C -0.158 4.158 27 C -0.167 4.167 28 C -0.164 4.164 29 C -0.098 4.098 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.120 0.880 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.145 0.855 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.129 -1.096 -9.655 12.669 hybrid contribution -1.296 0.255 0.907 1.602 sum 6.833 -0.841 -8.748 11.132 Atomic orbital electron populations 1.21999 0.94722 1.01483 1.02124 1.20848 0.94350 0.91591 0.85432 1.22241 0.97090 0.92479 0.87830 1.86346 1.77169 1.30480 1.44004 1.22608 1.02584 0.93011 0.95203 1.22882 0.90783 0.93796 0.88464 0.90532 1.86459 1.57548 1.40340 1.52633 1.23148 0.95763 0.89533 0.96847 1.48567 1.52143 1.30725 1.04199 1.20929 0.79410 0.84300 0.82461 1.90588 1.38951 1.30562 1.83413 1.21728 0.98296 1.03080 0.92875 1.17535 0.93719 0.92559 0.89243 0.96799 1.20931 0.91877 0.92801 1.46895 0.95619 1.25162 0.99806 0.95751 0.95474 1.69747 1.34033 0.98021 1.50351 0.86029 0.84029 0.77125 0.77551 1.21506 1.20624 1.20646 1.20287 0.93218 0.95570 0.96080 1.21067 1.01660 0.99818 0.94463 1.21147 1.00637 0.95452 0.98587 1.21198 1.02493 0.95044 0.97920 1.21368 1.00682 1.00085 0.94283 1.21300 0.94598 0.93448 1.00416 0.90150 0.92970 0.94367 0.94861 0.92756 0.75282 0.88768 0.89298 0.74879 0.89594 0.89607 0.85801 0.91146 0.92840 0.88047 0.85122 0.84662 0.85494 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 8.24 71.98 0.59 -4.26 16 2 C 0.16 4.92 0.65 3.95 0.00 4.92 16 3 C 0.08 2.40 5.83 71.98 0.42 2.82 16 4 O -0.57 -13.88 12.68 -148.98 -1.89 -15.77 16 5 C -0.10 -2.30 5.51 31.92 0.18 -2.12 16 6 C 0.10 2.19 4.44 32.13 0.14 2.34 16 7 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 8 O -0.56 -10.34 13.47 -148.98 -2.01 -12.34 16 9 C 0.07 1.76 6.42 86.86 0.56 2.32 16 10 N -0.62 -20.72 2.82 -765.27 -2.16 -22.87 16 11 C 0.54 22.95 7.17 87.66 0.63 23.58 16 12 O -0.56 -28.05 12.55 -3.02 -0.04 -28.09 16 13 C -0.12 -5.11 3.08 29.85 0.09 -5.02 16 14 C 0.09 4.35 1.97 -12.29 -0.02 4.32 16 15 H 0.01 0.71 7.91 -2.38 -0.02 0.69 16 16 C -0.49 -26.88 7.27 25.60 0.19 -26.69 16 17 H 0.03 1.54 7.82 -2.91 -0.02 1.52 16 18 C 0.04 1.98 5.12 84.66 0.43 2.42 16 19 N -0.88 -43.90 7.99 21.45 0.17 -43.73 16 20 Si 0.92 44.37 29.54 68.60 2.03 46.40 16 21 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C -0.05 -2.32 4.69 -19.87 -0.09 -2.41 16 25 C -0.15 -6.41 9.71 22.27 0.22 -6.19 16 26 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 27 C -0.15 -4.99 10.05 22.27 0.22 -4.77 16 28 C -0.15 -5.30 10.05 22.27 0.22 -5.07 16 29 C -0.08 -3.33 7.45 22.27 0.17 -3.16 16 30 H 0.08 2.39 7.67 -2.39 -0.02 2.37 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.04 1.56 6.70 -2.39 -0.02 1.54 16 33 H 0.03 1.18 6.84 -2.39 -0.02 1.16 16 34 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.40 5.96 9.12 -74.06 -0.68 5.28 16 36 H 0.09 2.11 7.83 -2.38 -0.02 2.09 16 37 H 0.09 2.05 7.85 -2.39 -0.02 2.03 16 38 H 0.40 3.92 9.11 -74.05 -0.67 3.24 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.15 7.48 -2.39 -0.02 2.14 16 41 H 0.12 5.52 4.41 -2.39 -0.01 5.51 16 42 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.26 12.57 8.31 -92.71 -0.77 11.80 16 44 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 45 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 46 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 47 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 48 H 0.13 5.61 5.18 -2.91 -0.02 5.59 16 Total: -1.00 -67.19 377.20 -0.09 -67.28 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.36 Total: 30.90 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.17 Total: -21.77 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -1.99 Total: -66.61 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -3.93 Total: -56.20 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.19 -0.09 -67.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912658090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.556 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds