Wall clock time and date at job start Tue Mar 31 2020 17:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.99720 * 2 1 4 4 O 1.42893 * 109.47395 * 300.36308 * 3 2 1 5 5 C 1.54327 * 109.87989 * 238.90865 * 2 1 3 6 6 C 1.55155 * 102.94250 * 262.77556 * 5 2 1 7 7 H 1.08999 * 111.00310 * 206.39013 * 6 5 2 8 8 O 1.42899 * 111.00457 * 82.57353 * 6 5 2 9 9 C 1.54909 * 101.58172 * 324.49973 * 6 5 2 10 10 N 1.47018 * 109.88156 * 121.10174 * 2 1 3 11 11 C 1.34774 * 125.64756 * 300.43788 * 10 2 1 12 12 O 1.21283 * 120.00256 * 0.02562 * 11 10 2 13 13 C 1.50704 * 119.99691 * 180.02562 * 11 10 2 14 14 C 1.53005 * 109.46991 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.46949 * 305.37190 * 14 13 11 16 16 C 1.50704 * 109.47073 * 65.36652 * 14 13 11 17 17 H 1.08002 * 119.99799 * 34.61797 * 16 14 13 18 18 C 1.37878 * 119.99933 * 214.61924 * 16 14 13 19 19 N 1.31511 * 119.99756 * 186.44582 * 18 16 14 20 20 Si 1.86793 * 120.00142 * 6.45294 * 18 16 14 21 21 H 1.48500 * 109.47648 * 85.01408 * 20 18 16 22 22 H 1.48499 * 109.47211 * 205.01944 * 20 18 16 23 23 H 1.48505 * 109.47142 * 325.01471 * 20 18 16 24 24 C 1.50689 * 109.47179 * 185.36831 * 14 13 11 25 25 C 1.38233 * 120.00103 * 296.35799 * 24 14 13 26 26 C 1.38241 * 120.00019 * 179.74524 * 25 24 14 27 27 C 1.38235 * 119.99713 * 0.55154 * 26 25 24 28 28 C 1.38230 * 120.00094 * 359.69848 * 27 26 25 29 29 C 1.38230 * 120.00040 * 0.02777 * 28 27 26 30 30 H 1.09000 * 109.47340 * 179.63466 * 1 2 3 31 31 H 1.09000 * 109.47401 * 299.63427 * 1 2 3 32 32 H 1.09001 * 109.47357 * 59.64036 * 1 2 3 33 33 H 1.09010 * 109.46452 * 60.36505 * 3 2 1 34 34 H 1.09001 * 109.46951 * 180.35384 * 3 2 1 35 35 H 0.96700 * 113.99686 * 179.97438 * 4 3 2 36 36 H 1.08999 * 110.71626 * 144.41042 * 5 2 1 37 37 H 1.09003 * 110.72426 * 21.14041 * 5 2 1 38 38 H 0.96701 * 113.99988 * 179.97438 * 8 6 5 39 39 H 1.09001 * 110.36770 * 155.84767 * 9 6 5 40 40 H 1.09007 * 110.36749 * 278.17499 * 9 6 5 41 41 H 1.09003 * 109.47237 * 299.99643 * 13 11 10 42 42 H 1.08995 * 109.47297 * 60.00265 * 13 11 10 43 43 H 0.97000 * 120.00178 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.00175 * 359.97438 * 25 24 14 45 45 H 1.08003 * 119.99815 * 180.27302 * 26 25 24 46 46 H 1.08008 * 119.99641 * 179.72693 * 27 26 25 47 47 H 1.08003 * 120.00014 * 179.97438 * 28 27 26 48 48 H 1.07998 * 120.00070 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4377 0.0000 4 8 1.5762 2.1183 -1.1624 5 6 2.0548 -0.7495 -1.2428 6 6 2.3518 -2.1695 -0.6926 7 1 3.1265 -2.6620 -1.2803 8 8 1.1631 -2.9615 -0.6507 9 6 2.8568 -1.8499 0.7366 10 7 2.0300 -0.7142 1.1838 11 6 1.7753 -0.3847 2.4656 12 8 1.0785 0.5754 2.7180 13 6 2.3565 -1.2092 3.5852 14 6 1.9168 -0.6257 4.9296 15 1 2.1877 0.4292 4.9739 16 6 0.4234 -0.7673 5.0743 17 1 -0.0795 -1.6301 4.6631 18 6 -0.3007 0.2046 5.7316 19 7 -1.5812 0.0224 5.9695 20 14 0.5370 1.7801 6.2840 21 1 0.5525 2.7524 5.1617 22 1 -0.2066 2.3601 7.4312 23 1 1.9311 1.4804 6.6985 24 6 2.6024 -1.3678 6.0476 25 6 2.3503 -2.7132 6.2409 26 6 2.9833 -3.3951 7.2633 27 6 3.8597 -2.7291 8.0994 28 6 4.1080 -1.3826 7.9093 29 6 3.4793 -0.7020 6.8835 30 1 -0.3634 -1.0276 -0.0066 31 1 -0.3634 0.5081 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 1.6999 1.9529 0.8934 34 1 3.1432 1.4277 -0.0063 35 1 1.8693 3.0374 -1.2280 36 1 2.9656 -0.2830 -1.6183 37 1 1.2917 -0.7889 -2.0202 38 1 1.2993 -3.8577 -0.3139 39 1 2.7087 -2.7082 1.3920 40 1 3.9091 -1.5667 0.7126 41 1 2.0017 -2.2365 3.5020 42 1 3.4445 -1.1941 3.5207 43 1 -2.0908 0.7063 6.4315 44 1 1.6615 -3.2323 5.5909 45 1 2.7896 -4.4473 7.4115 46 1 4.3509 -3.2609 8.9009 47 1 4.7924 -0.8621 8.5628 48 1 3.6729 0.3501 6.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912658091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:10 Heat of formation + Delta-G solvation = -101.878761 kcal Electronic energy + Delta-G solvation = -30248.424139 eV Core-core repulsion = 26268.404432 eV Total energy + Delta-G solvation = -3980.019707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36838 -38.71841 -37.64429 -36.78556 -35.10623 -34.06877 -32.02101 -31.45679 -30.22241 -30.18298 -28.82127 -26.32949 -26.00757 -25.18974 -22.83363 -22.08438 -21.82354 -20.75078 -19.26503 -18.24986 -17.63743 -17.05835 -16.93773 -16.48772 -15.91672 -15.42836 -15.04318 -14.75918 -14.50271 -14.21939 -13.99978 -13.96388 -13.81120 -13.47670 -13.06354 -12.74579 -12.59481 -12.51816 -12.36900 -12.31754 -12.01241 -11.89874 -11.76281 -11.60628 -11.38659 -11.03310 -10.86122 -10.76988 -10.59432 -10.54926 -10.36117 -10.12126 -9.88288 -9.83708 -9.60646 -9.18364 -8.85816 -8.40732 -8.25448 -8.21157 -7.82618 -5.97427 -3.93985 2.08815 2.13761 3.20608 3.38255 3.42966 3.47456 3.52477 4.03099 4.38611 4.46646 4.52169 4.54199 4.58542 4.88122 5.13185 5.25131 5.27990 5.37419 5.43925 5.50858 5.54666 5.57222 5.59234 5.66199 5.68264 5.85921 5.90492 5.93136 5.99183 6.05538 6.06516 6.15004 6.23287 6.31323 6.41120 6.55530 6.67254 6.76222 6.82358 6.91178 7.00097 7.13411 7.26445 7.55393 7.56681 7.62689 7.71699 7.82206 7.99269 8.53636 8.94652 9.02295 9.67608 11.15523 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.004408 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.119018 B = 6351.139157 C = 7473.097226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 C 0.070 3.930 4 O -0.569 6.569 5 C -0.108 4.108 6 C 0.088 3.912 7 H 0.075 0.925 8 O -0.551 6.551 9 C 0.073 3.927 10 N -0.618 5.618 11 C 0.533 3.467 12 O -0.493 6.493 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.048 0.952 16 C -0.487 4.487 17 H 0.071 0.929 18 C 0.086 3.914 19 N -0.897 5.897 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.262 1.262 24 C -0.038 4.038 25 C -0.101 4.101 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.126 4.126 29 C -0.136 4.136 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.377 0.623 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.378 0.622 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.262 0.738 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.659 -4.544 -11.496 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.090 3.910 3 C -0.009 4.009 4 O -0.373 6.373 5 C -0.146 4.146 6 C 0.028 3.972 7 H 0.093 0.907 8 O -0.356 6.356 9 C -0.051 4.051 10 N -0.358 5.358 11 C 0.322 3.678 12 O -0.364 6.364 13 C -0.152 4.152 14 C 0.037 3.963 15 H 0.066 0.934 16 C -0.524 4.524 17 H 0.089 0.911 18 C -0.116 4.116 19 N -0.535 5.535 20 Si 0.701 3.299 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.186 1.186 24 C -0.038 4.038 25 C -0.119 4.119 26 C -0.145 4.145 27 C -0.168 4.168 28 C -0.144 4.144 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.223 0.777 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.512 -3.911 -11.498 17.437 hybrid contribution 0.861 0.855 0.883 1.501 sum 13.372 -3.055 -10.615 17.345 Atomic orbital electron populations 1.22033 0.93151 1.02695 1.02858 1.20625 0.95606 0.89930 0.84842 1.22536 0.96452 0.93452 0.88472 1.86398 1.77277 1.28889 1.44773 1.22702 1.02413 0.92242 0.97209 1.22956 0.87360 0.92516 0.94394 0.90690 1.86574 1.32836 1.28305 1.87890 1.22958 0.95023 0.90758 0.96395 1.48668 1.52373 1.29898 1.04847 1.20584 0.80404 0.85587 0.81219 1.90727 1.35511 1.28113 1.82073 1.21670 0.98826 0.99913 0.94747 1.18125 0.96815 0.94859 0.86490 0.93359 1.20560 0.87835 1.07955 1.36031 0.91119 1.24876 0.94511 0.97750 0.94494 1.69893 1.07590 1.34450 1.41544 0.86940 0.80114 0.84965 0.77889 1.19881 1.22324 1.18647 1.20733 0.91593 0.93765 0.97755 1.20951 0.98482 0.94558 0.97955 1.21049 0.97935 0.99241 0.96316 1.20858 1.00796 0.94827 1.00290 1.20960 1.00496 0.94666 0.98308 1.21146 0.98101 0.99498 0.96699 0.91780 0.90944 0.92108 0.91760 0.94187 0.77666 0.89649 0.89127 0.77447 0.90087 0.91118 0.89864 0.91580 0.92855 0.86338 0.87207 0.87441 0.87405 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.24 37.16 0.31 -2.30 16 2 C 0.18 2.62 0.64 -130.84 -0.08 2.53 16 3 C 0.07 1.00 5.83 37.16 0.22 1.22 16 4 O -0.57 -7.23 12.70 -35.23 -0.45 -7.68 16 5 C -0.11 -1.24 5.47 -24.90 -0.14 -1.38 16 6 C 0.09 0.86 4.43 -24.58 -0.11 0.75 16 7 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 8 O -0.55 -6.13 12.75 -35.23 -0.45 -6.58 16 9 C 0.07 0.80 6.42 -2.53 -0.02 0.78 16 10 N -0.62 -9.64 2.82 -155.81 -0.44 -10.08 16 11 C 0.53 10.52 7.17 -10.98 -0.08 10.44 16 12 O -0.49 -11.96 12.58 5.55 0.07 -11.89 16 13 C -0.11 -2.07 3.95 -27.88 -0.11 -2.18 16 14 C 0.06 1.28 1.28 -92.92 -0.12 1.16 16 15 H 0.05 1.17 4.78 -51.92 -0.25 0.92 16 16 C -0.49 -13.37 6.94 -34.44 -0.24 -13.61 16 17 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 18 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 19 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 20 Si 0.87 22.85 27.04 -169.99 -4.60 18.26 16 21 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 23 H -0.26 -6.33 5.15 56.52 0.29 -6.04 16 24 C -0.04 -0.79 4.77 -104.63 -0.50 -1.29 16 25 C -0.10 -1.96 8.87 -39.58 -0.35 -2.31 16 26 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 27 C -0.15 -2.41 10.05 -39.59 -0.40 -2.81 16 28 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 29 C -0.14 -2.67 9.13 -39.58 -0.36 -3.03 16 30 H 0.06 1.15 7.41 -51.93 -0.38 0.77 16 31 H 0.07 1.53 6.72 -51.93 -0.35 1.18 16 32 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 33 H 0.06 1.12 6.86 -51.92 -0.36 0.77 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.38 3.12 9.12 45.56 0.42 3.54 16 36 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 37 H 0.09 1.10 7.83 -51.93 -0.41 0.69 16 38 H 0.38 2.62 9.12 45.56 0.42 3.04 16 39 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.46 7.51 -51.93 -0.39 1.07 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.12 2.26 7.77 -52.49 -0.41 1.86 16 45 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 46 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 48 H 0.11 2.15 6.95 -52.49 -0.36 1.78 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -36.03 380.15 -8.13 -44.16 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.90 Total: 10.17 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.87 Total: -14.66 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.33 Total: -37.50 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.83 Total: -26.15 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.60 Total: 18.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.03 -8.13 -44.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912658091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.715 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds