Wall clock time and date at job start Tue Mar 31 2020 17:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.99720 * 2 1 4 4 O 1.42893 * 109.47395 * 300.36308 * 3 2 1 5 5 C 1.54327 * 109.87989 * 238.90865 * 2 1 3 6 6 C 1.55155 * 102.94250 * 262.77556 * 5 2 1 7 7 H 1.08999 * 111.00310 * 206.39013 * 6 5 2 8 8 O 1.42899 * 111.00457 * 82.57353 * 6 5 2 9 9 C 1.54909 * 101.58172 * 324.49973 * 6 5 2 10 10 N 1.47018 * 109.88156 * 121.10174 * 2 1 3 11 11 C 1.34774 * 125.64756 * 300.43788 * 10 2 1 12 12 O 1.21283 * 120.00256 * 0.02562 * 11 10 2 13 13 C 1.50704 * 119.99691 * 180.02562 * 11 10 2 14 14 C 1.53005 * 109.46991 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.46949 * 305.37190 * 14 13 11 16 16 C 1.50704 * 109.47073 * 65.36652 * 14 13 11 17 17 H 1.08002 * 119.99799 * 34.61797 * 16 14 13 18 18 C 1.37878 * 119.99933 * 214.61924 * 16 14 13 19 19 N 1.31511 * 119.99756 * 186.44582 * 18 16 14 20 20 Si 1.86793 * 120.00142 * 6.45294 * 18 16 14 21 21 H 1.48500 * 109.47648 * 85.01408 * 20 18 16 22 22 H 1.48499 * 109.47211 * 205.01944 * 20 18 16 23 23 H 1.48505 * 109.47142 * 325.01471 * 20 18 16 24 24 C 1.50689 * 109.47179 * 185.36831 * 14 13 11 25 25 C 1.38233 * 120.00103 * 296.35799 * 24 14 13 26 26 C 1.38241 * 120.00019 * 179.74524 * 25 24 14 27 27 C 1.38235 * 119.99713 * 0.55154 * 26 25 24 28 28 C 1.38230 * 120.00094 * 359.69848 * 27 26 25 29 29 C 1.38230 * 120.00040 * 0.02777 * 28 27 26 30 30 H 1.09000 * 109.47340 * 179.63466 * 1 2 3 31 31 H 1.09000 * 109.47401 * 299.63427 * 1 2 3 32 32 H 1.09001 * 109.47357 * 59.64036 * 1 2 3 33 33 H 1.09010 * 109.46452 * 60.36505 * 3 2 1 34 34 H 1.09001 * 109.46951 * 180.35384 * 3 2 1 35 35 H 0.96700 * 113.99686 * 179.97438 * 4 3 2 36 36 H 1.08999 * 110.71626 * 144.41042 * 5 2 1 37 37 H 1.09003 * 110.72426 * 21.14041 * 5 2 1 38 38 H 0.96701 * 113.99988 * 179.97438 * 8 6 5 39 39 H 1.09001 * 110.36770 * 155.84767 * 9 6 5 40 40 H 1.09007 * 110.36749 * 278.17499 * 9 6 5 41 41 H 1.09003 * 109.47237 * 299.99643 * 13 11 10 42 42 H 1.08995 * 109.47297 * 60.00265 * 13 11 10 43 43 H 0.97000 * 120.00178 * 180.02562 * 19 18 16 44 44 H 1.08000 * 120.00175 * 359.97438 * 25 24 14 45 45 H 1.08003 * 119.99815 * 180.27302 * 26 25 24 46 46 H 1.08008 * 119.99641 * 179.72693 * 27 26 25 47 47 H 1.08003 * 120.00014 * 179.97438 * 28 27 26 48 48 H 1.07998 * 120.00070 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4377 0.0000 4 8 1.5762 2.1183 -1.1624 5 6 2.0548 -0.7495 -1.2428 6 6 2.3518 -2.1695 -0.6926 7 1 3.1265 -2.6620 -1.2803 8 8 1.1631 -2.9615 -0.6507 9 6 2.8568 -1.8499 0.7366 10 7 2.0300 -0.7142 1.1838 11 6 1.7753 -0.3847 2.4656 12 8 1.0785 0.5754 2.7180 13 6 2.3565 -1.2092 3.5852 14 6 1.9168 -0.6257 4.9296 15 1 2.1877 0.4292 4.9739 16 6 0.4234 -0.7673 5.0743 17 1 -0.0795 -1.6301 4.6631 18 6 -0.3007 0.2046 5.7316 19 7 -1.5812 0.0224 5.9695 20 14 0.5370 1.7801 6.2840 21 1 0.5525 2.7524 5.1617 22 1 -0.2066 2.3601 7.4312 23 1 1.9311 1.4804 6.6985 24 6 2.6024 -1.3678 6.0476 25 6 2.3503 -2.7132 6.2409 26 6 2.9833 -3.3951 7.2633 27 6 3.8597 -2.7291 8.0994 28 6 4.1080 -1.3826 7.9093 29 6 3.4793 -0.7020 6.8835 30 1 -0.3634 -1.0276 -0.0066 31 1 -0.3634 0.5081 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 1.6999 1.9529 0.8934 34 1 3.1432 1.4277 -0.0063 35 1 1.8693 3.0374 -1.2280 36 1 2.9656 -0.2830 -1.6183 37 1 1.2917 -0.7889 -2.0202 38 1 1.2993 -3.8577 -0.3139 39 1 2.7087 -2.7082 1.3920 40 1 3.9091 -1.5667 0.7126 41 1 2.0017 -2.2365 3.5020 42 1 3.4445 -1.1941 3.5207 43 1 -2.0908 0.7063 6.4315 44 1 1.6615 -3.2323 5.5909 45 1 2.7896 -4.4473 7.4115 46 1 4.3509 -3.2609 8.9009 47 1 4.7924 -0.8621 8.5628 48 1 3.6729 0.3501 6.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912658091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:09 Heat of formation + Delta-G solvation = -130.721021 kcal Electronic energy + Delta-G solvation = -30249.674833 eV Core-core repulsion = 26268.404432 eV Total energy + Delta-G solvation = -3981.270401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.58611 -40.14273 -38.99422 -37.77192 -36.20340 -35.77210 -33.83783 -32.95990 -31.60194 -31.22293 -30.25323 -27.85752 -27.59608 -26.28088 -24.49938 -23.37306 -23.03054 -21.91777 -20.80316 -19.49495 -19.04479 -18.63437 -18.22678 -17.68111 -17.20018 -16.66234 -16.58713 -16.06950 -15.88776 -15.62886 -15.44099 -15.27327 -14.88984 -14.84324 -14.66794 -14.33675 -14.10538 -13.86719 -13.72715 -13.59532 -13.34412 -13.27638 -13.07354 -12.94008 -12.83500 -12.73529 -12.41829 -12.08325 -11.98594 -11.91894 -11.80902 -11.58964 -11.47435 -11.12280 -11.07248 -10.86000 -10.62997 -10.39603 -9.61766 -9.52911 -9.30413 -8.24377 -6.20023 0.68614 0.73316 1.27014 1.35931 1.37659 1.88648 2.00574 2.38820 3.07211 3.22192 3.27838 3.36537 3.51750 3.67843 3.96393 4.03039 4.08885 4.11759 4.20293 4.29491 4.31580 4.42498 4.47952 4.50294 4.52347 4.61577 4.62931 4.69913 4.74616 4.83915 4.85533 4.88773 4.96276 5.01896 5.08305 5.09101 5.19432 5.30866 5.37203 5.40205 5.63999 5.68429 5.77231 5.82759 6.02272 6.32012 6.35868 6.66837 6.78740 6.80065 6.97859 7.43368 7.48676 8.92882 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.004408 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.119018 B = 6351.139157 C = 7473.097226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.165 3.835 3 C 0.079 3.921 4 O -0.574 6.574 5 C -0.101 4.101 6 C 0.095 3.905 7 H 0.122 0.878 8 O -0.578 6.578 9 C 0.062 3.938 10 N -0.614 5.614 11 C 0.524 3.476 12 O -0.554 6.554 13 C -0.103 4.103 14 C 0.058 3.942 15 H 0.031 0.969 16 C -0.461 4.461 17 H 0.031 0.969 18 C 0.023 3.977 19 N -0.953 5.953 20 Si 0.923 3.077 21 H -0.290 1.290 22 H -0.298 1.298 23 H -0.229 1.229 24 C -0.062 4.062 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.139 4.139 28 C -0.124 4.124 29 C -0.153 4.153 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.395 0.605 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.257 0.743 44 H 0.107 0.893 45 H 0.139 0.861 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.307 -6.393 -11.820 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.080 3.920 3 C 0.000 4.000 4 O -0.382 6.382 5 C -0.139 4.139 6 C 0.036 3.964 7 H 0.140 0.860 8 O -0.387 6.387 9 C -0.060 4.060 10 N -0.352 5.352 11 C 0.314 3.686 12 O -0.430 6.430 13 C -0.143 4.143 14 C 0.039 3.961 15 H 0.049 0.951 16 C -0.499 4.499 17 H 0.049 0.951 18 C -0.173 4.173 19 N -0.595 5.595 20 Si 0.750 3.250 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.152 1.152 24 C -0.063 4.063 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.157 4.157 28 C -0.141 4.141 29 C -0.171 4.171 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.157 0.843 46 H 0.165 0.835 47 H 0.158 0.842 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.237 -5.807 -11.859 21.713 hybrid contribution -0.535 1.298 0.897 1.666 sum 16.702 -4.508 -10.961 20.480 Atomic orbital electron populations 1.21908 0.95986 1.01187 1.00685 1.20801 0.93559 0.91216 0.86388 1.22321 0.97590 0.92772 0.87356 1.86354 1.77669 1.30524 1.43612 1.22706 1.03162 0.93191 0.94852 1.23095 0.87844 0.91749 0.93724 0.86040 1.86538 1.34238 1.29797 1.88111 1.23420 0.95939 0.89303 0.97356 1.48613 1.51865 1.30919 1.03756 1.20821 0.79900 0.85001 0.82905 1.90711 1.38261 1.30676 1.83381 1.21548 1.00940 0.99519 0.92258 1.17992 0.93619 0.94713 0.89781 0.95071 1.20769 0.90747 1.05428 1.32982 0.95084 1.25608 0.94996 1.00886 0.95842 1.70040 1.09301 1.35565 1.44614 0.86121 0.80965 0.81204 0.76681 1.21661 1.22548 1.15193 1.20453 0.93593 0.94556 0.97661 1.20983 0.99166 0.94238 0.99249 1.21391 0.97037 1.00682 0.95090 1.21337 0.99519 0.94581 1.00285 1.21328 1.00072 0.95258 0.97481 1.21243 0.98766 0.99586 0.97501 0.92879 0.95772 0.91410 0.95973 0.91612 0.75400 0.86884 0.89814 0.75449 0.89239 0.87797 0.89097 0.87854 0.93384 0.87438 0.84282 0.83541 0.84232 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.24 71.98 0.59 -4.59 16 2 C 0.17 4.90 0.64 3.95 0.00 4.90 16 3 C 0.08 2.26 5.83 71.98 0.42 2.68 16 4 O -0.57 -14.18 12.70 -148.98 -1.89 -16.07 16 5 C -0.10 -2.05 5.47 31.78 0.17 -1.88 16 6 C 0.10 1.51 4.43 31.99 0.14 1.65 16 7 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 8 O -0.58 -11.69 12.75 -148.98 -1.90 -13.59 16 9 C 0.06 1.15 6.42 86.85 0.56 1.71 16 10 N -0.61 -18.81 2.82 -765.24 -2.16 -20.97 16 11 C 0.52 21.27 7.17 87.66 0.63 21.90 16 12 O -0.55 -28.74 12.58 -3.04 -0.04 -28.78 16 13 C -0.10 -3.81 3.95 29.85 0.12 -3.69 16 14 C 0.06 2.69 1.28 -12.29 -0.02 2.68 16 15 H 0.03 1.54 4.78 -2.38 -0.01 1.53 16 16 C -0.46 -26.73 6.94 25.60 0.18 -26.55 16 17 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 18 C 0.02 1.41 5.47 84.66 0.46 1.88 16 19 N -0.95 -63.88 13.96 21.45 0.30 -63.58 16 20 Si 0.92 49.41 27.04 68.60 1.85 51.27 16 21 H -0.29 -16.14 7.11 99.48 0.71 -15.43 16 22 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 23 H -0.23 -10.86 5.15 99.48 0.51 -10.35 16 24 C -0.06 -2.54 4.77 -19.87 -0.09 -2.63 16 25 C -0.12 -4.42 8.87 22.27 0.20 -4.23 16 26 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 27 C -0.14 -3.83 10.05 22.27 0.22 -3.60 16 28 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 29 C -0.15 -5.65 9.13 22.27 0.20 -5.45 16 30 H 0.05 2.02 7.41 -2.39 -0.02 2.00 16 31 H 0.02 1.09 6.72 -2.39 -0.02 1.08 16 32 H 0.07 2.32 7.70 -2.39 -0.02 2.30 16 33 H 0.02 0.82 6.86 -2.38 -0.02 0.80 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.40 6.16 9.12 -74.06 -0.68 5.49 16 36 H 0.11 1.70 7.85 -2.39 -0.02 1.68 16 37 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 38 H 0.40 4.59 9.12 -74.06 -0.68 3.91 16 39 H 0.09 1.54 7.48 -2.39 -0.02 1.53 16 40 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.09 3.20 7.51 -2.39 -0.02 3.18 16 42 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.26 16.49 8.31 -92.71 -0.77 15.72 16 44 H 0.11 4.15 7.77 -2.91 -0.02 4.13 16 45 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 47 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 48 H 0.11 3.97 6.95 -2.91 -0.02 3.95 16 Total: -1.00 -87.35 380.15 -0.16 -87.51 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.56 Total: 26.45 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.24 Total: -22.24 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.86 Total: -84.54 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -3.83 Total: -58.44 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.85 Total: 51.27 kcal Total: -87.35 -0.16 -87.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912658091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.212 kcal (2) G-P(sol) polarization free energy of solvation -87.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds