Wall clock time and date at job start Tue Mar 31 2020 17:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.87051 * 2 1 4 4 O 1.42898 * 109.47398 * 301.01379 * 3 2 1 5 5 C 1.54322 * 110.00800 * 238.90479 * 2 1 3 6 6 C 1.55151 * 102.94374 * 262.69956 * 5 2 1 7 7 H 1.09007 * 111.00935 * 82.60942 * 6 5 2 8 8 O 1.42898 * 111.00862 * 206.42432 * 6 5 2 9 9 C 1.55129 * 101.48689 * 324.33294 * 6 5 2 10 10 N 1.47024 * 109.88449 * 121.02076 * 2 1 3 11 11 C 1.34778 * 125.64342 * 300.59174 * 10 2 1 12 12 O 1.21278 * 120.00369 * 0.02562 * 11 10 2 13 13 C 1.50694 * 119.99530 * 179.73031 * 11 10 2 14 14 C 1.53003 * 109.47190 * 180.27671 * 13 11 10 15 15 H 1.09000 * 109.46834 * 54.99546 * 14 13 11 16 16 C 1.50703 * 109.46916 * 294.99766 * 14 13 11 17 17 H 1.07998 * 119.99924 * 325.12433 * 16 14 13 18 18 C 1.37880 * 119.99968 * 145.12539 * 16 14 13 19 19 N 1.31511 * 119.99893 * 184.98745 * 18 16 14 20 20 Si 1.86794 * 120.00173 * 4.98907 * 18 16 14 21 21 H 1.48502 * 109.47315 * 84.72517 * 20 18 16 22 22 H 1.48496 * 109.47263 * 204.73046 * 20 18 16 23 23 H 1.48501 * 109.46960 * 324.72849 * 20 18 16 24 24 C 1.50701 * 109.47351 * 174.99840 * 14 13 11 25 25 C 1.38225 * 120.00085 * 64.69006 * 24 14 13 26 26 C 1.38236 * 119.99987 * 179.79091 * 25 24 14 27 27 C 1.38234 * 119.99858 * 0.45776 * 26 25 24 28 28 C 1.38234 * 120.00119 * 359.77219 * 27 26 25 29 29 C 1.38236 * 119.99820 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47193 * 298.97679 * 1 2 3 31 31 H 1.09001 * 109.47547 * 58.98591 * 1 2 3 32 32 H 1.09007 * 109.47260 * 178.98169 * 1 2 3 33 33 H 1.08998 * 109.47333 * 61.02512 * 3 2 1 34 34 H 1.09006 * 109.46882 * 181.01931 * 3 2 1 35 35 H 0.96704 * 113.99896 * 179.97438 * 4 3 2 36 36 H 1.08998 * 110.72260 * 21.06702 * 5 2 1 37 37 H 1.09006 * 110.71979 * 144.34117 * 5 2 1 38 38 H 0.96709 * 114.00375 * 179.97438 * 8 6 5 39 39 H 1.08996 * 110.50193 * 278.45571 * 9 6 5 40 40 H 1.09004 * 110.34611 * 156.05595 * 9 6 5 41 41 H 1.08999 * 109.46998 * 300.27059 * 13 11 10 42 42 H 1.08998 * 109.47677 * 60.27348 * 13 11 10 43 43 H 0.96992 * 120.00227 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.00447 * 359.97438 * 25 24 14 45 45 H 1.08006 * 120.00098 * 180.25289 * 26 25 24 46 46 H 1.08005 * 120.00110 * 179.79309 * 27 26 25 47 47 H 1.07993 * 120.00054 * 179.97438 * 28 27 26 48 48 H 1.07996 * 119.99773 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 8 1.5591 2.1229 -1.1546 5 6 2.0580 -0.7489 -1.2417 6 6 2.3574 -2.1679 -0.6905 7 1 1.4522 -2.7744 -0.6599 8 8 3.3760 -2.8116 -1.4587 9 6 2.8644 -1.8433 0.7393 10 7 2.0300 -0.7125 1.1849 11 6 1.7730 -0.3829 2.4662 12 8 1.0738 0.5757 2.7172 13 6 2.3491 -1.2094 3.5868 14 6 1.9024 -0.6291 4.9302 15 1 0.8147 -0.5628 4.9537 16 6 2.4934 0.7462 5.1047 17 1 3.4787 0.9634 4.7195 18 6 1.7762 1.7272 5.7561 19 7 2.2488 2.9526 5.8228 20 14 0.1332 1.3157 6.5439 21 1 0.3604 0.7687 7.9058 22 1 -0.6935 2.5457 6.6361 23 1 -0.5733 0.3052 5.7163 24 6 2.3754 -1.5244 6.0464 25 6 3.7287 -1.6839 6.2781 26 6 4.1625 -2.5017 7.3047 27 6 3.2430 -3.1675 8.0935 28 6 1.8897 -3.0117 7.8588 29 6 1.4559 -2.1906 6.8348 30 1 -0.3633 0.4978 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3634 -1.0276 -0.0183 33 1 1.7053 1.9498 0.8990 34 1 3.1399 1.4313 -0.0183 35 1 1.8495 3.0430 -1.2198 36 1 1.2960 -0.7904 -2.0200 37 1 2.9683 -0.2807 -1.6163 38 1 3.5975 -3.7013 -1.1513 39 1 3.9148 -1.5533 0.7152 40 1 2.7220 -2.7016 1.3959 41 1 1.9955 -2.2367 3.4994 42 1 3.4373 -1.1934 3.5279 43 1 1.7441 3.6428 6.2807 44 1 4.4472 -1.1672 5.6591 45 1 5.2199 -2.6231 7.4884 46 1 3.5819 -3.8091 8.8935 47 1 1.1714 -3.5321 8.4747 48 1 0.3986 -2.0692 6.6511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912658093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:19 Heat of formation + Delta-G solvation = -102.790761 kcal Electronic energy + Delta-G solvation = -30059.359684 eV Core-core repulsion = 26079.300430 eV Total energy + Delta-G solvation = -3980.059254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.38695 -38.75106 -37.69898 -36.80246 -35.37683 -34.11166 -32.08010 -31.50939 -30.25291 -30.03101 -28.85769 -26.49208 -26.03984 -25.15237 -22.85941 -22.11139 -21.85748 -20.80171 -19.30919 -18.16610 -17.67862 -17.22103 -16.97621 -16.59883 -15.92174 -15.40085 -15.05169 -14.69666 -14.57293 -14.32239 -14.13697 -13.92094 -13.70404 -13.60168 -13.09341 -12.84772 -12.75673 -12.59258 -12.51945 -12.34153 -12.20803 -12.00378 -11.84430 -11.59050 -11.26610 -11.17817 -11.03661 -10.82070 -10.62538 -10.54111 -10.39919 -10.23268 -9.91511 -9.77969 -9.63273 -9.11533 -8.93732 -8.46851 -8.35083 -8.27263 -7.86287 -6.01358 -3.98266 2.04107 2.09732 3.08656 3.34710 3.39277 3.43607 3.44583 3.98463 4.39213 4.40173 4.47723 4.53439 4.63202 4.85559 5.11485 5.20774 5.24899 5.27108 5.42476 5.47480 5.50971 5.55911 5.62733 5.64615 5.80373 5.84253 5.88397 5.88822 5.96036 5.97060 6.01319 6.05209 6.18262 6.19285 6.28054 6.47464 6.54876 6.63946 6.73764 6.82229 6.99379 7.09444 7.21613 7.38536 7.53919 7.68249 7.70579 7.78618 7.92305 8.49633 8.89381 8.97347 9.63122 11.11753 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004390 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.726882 B = 6377.256545 C = 7916.685539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.173 3.827 3 C 0.070 3.930 4 O -0.572 6.572 5 C -0.105 4.105 6 C 0.088 3.912 7 H 0.074 0.926 8 O -0.557 6.557 9 C 0.074 3.926 10 N -0.622 5.622 11 C 0.533 3.467 12 O -0.488 6.488 13 C -0.110 4.110 14 C 0.046 3.954 15 H 0.058 0.942 16 C -0.486 4.486 17 H 0.070 0.930 18 C 0.088 3.912 19 N -0.898 5.898 20 Si 0.870 3.130 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.261 1.261 24 C -0.040 4.040 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.124 4.124 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.380 0.620 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.380 0.620 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.262 0.738 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 -12.534 -10.327 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.088 3.912 3 C -0.009 4.009 4 O -0.377 6.377 5 C -0.143 4.143 6 C 0.028 3.972 7 H 0.092 0.908 8 O -0.362 6.362 9 C -0.050 4.050 10 N -0.363 5.363 11 C 0.322 3.678 12 O -0.359 6.359 13 C -0.150 4.150 14 C 0.027 3.973 15 H 0.076 0.924 16 C -0.523 4.523 17 H 0.089 0.911 18 C -0.115 4.115 19 N -0.535 5.535 20 Si 0.699 3.301 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.186 1.186 24 C -0.040 4.040 25 C -0.120 4.120 26 C -0.144 4.144 27 C -0.168 4.168 28 C -0.142 4.142 29 C -0.159 4.159 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.226 0.774 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.227 0.773 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.439 -11.768 -10.436 15.735 hybrid contribution -0.393 -0.022 1.133 1.200 sum 0.046 -11.790 -9.303 15.018 Atomic orbital electron populations 1.22080 0.93577 1.01581 1.03718 1.20673 0.94999 0.90996 0.84574 1.22513 0.96850 0.92679 0.88839 1.86340 1.76793 1.28956 1.45626 1.22619 1.02424 0.92658 0.96594 1.23054 0.90152 0.94347 0.89671 0.90804 1.86529 1.58462 1.34005 1.57170 1.22943 0.95906 0.90314 0.95839 1.48679 1.52404 1.30343 1.04902 1.20612 0.80643 0.85421 0.81084 1.90736 1.36187 1.26992 1.81943 1.21642 1.01460 0.97297 0.94581 1.18318 0.98364 0.94096 0.86553 0.92396 1.20569 1.03637 0.91412 1.36653 0.91144 1.24854 0.96962 0.94581 0.95102 1.69877 1.39164 1.01389 1.43068 0.86971 0.85281 0.77990 0.79897 1.20243 1.21801 1.18647 1.20778 0.93141 0.92280 0.97831 1.20966 0.95900 0.97387 0.97708 1.21068 0.98722 0.98178 0.96431 1.20870 0.93403 1.01913 1.00573 1.20964 0.95552 0.99573 0.98119 1.21081 0.99193 0.98372 0.97207 0.90664 0.91282 0.93065 0.91102 0.93820 0.77373 0.89573 0.89733 0.77291 0.90815 0.90335 0.91463 0.89885 0.92833 0.86246 0.87142 0.87368 0.87315 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.25 37.16 0.31 -1.93 16 2 C 0.17 2.51 0.65 -130.84 -0.08 2.43 16 3 C 0.07 1.09 5.84 37.16 0.22 1.31 16 4 O -0.57 -7.70 12.67 -35.23 -0.45 -8.14 16 5 C -0.11 -1.26 5.49 -24.90 -0.14 -1.40 16 6 C 0.09 0.89 4.44 -24.47 -0.11 0.78 16 7 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 8 O -0.56 -5.21 13.47 -35.23 -0.47 -5.68 16 9 C 0.07 0.85 6.44 -2.41 -0.02 0.83 16 10 N -0.62 -9.55 2.82 -155.68 -0.44 -9.99 16 11 C 0.53 10.34 7.17 -10.99 -0.08 10.26 16 12 O -0.49 -11.60 12.54 5.56 0.07 -11.54 16 13 C -0.11 -2.01 3.97 -27.88 -0.11 -2.12 16 14 C 0.05 1.03 1.21 -92.92 -0.11 0.92 16 15 H 0.06 1.41 4.70 -51.93 -0.24 1.16 16 16 C -0.49 -13.08 6.87 -34.44 -0.24 -13.32 16 17 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 18 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 19 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 20 Si 0.87 22.56 27.15 -169.99 -4.62 17.94 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.26 -6.52 6.06 56.52 0.34 -6.18 16 24 C -0.04 -0.81 4.55 -104.63 -0.48 -1.29 16 25 C -0.10 -1.93 8.87 -39.59 -0.35 -2.28 16 26 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 27 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 28 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 29 C -0.14 -2.69 9.43 -39.58 -0.37 -3.07 16 30 H 0.07 1.34 6.69 -51.93 -0.35 0.99 16 31 H 0.07 0.95 7.65 -51.93 -0.40 0.56 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.35 6.84 -51.93 -0.36 1.00 16 34 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.38 3.61 9.12 45.56 0.42 4.02 16 36 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 37 H 0.08 1.06 7.84 -51.93 -0.41 0.66 16 38 H 0.38 1.82 9.12 45.56 0.42 2.23 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.77 7.47 -51.93 -0.39 0.38 16 41 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 42 H 0.08 1.44 7.86 -51.93 -0.41 1.03 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.12 2.24 7.80 -52.49 -0.41 1.83 16 45 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 46 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 48 H 0.11 2.03 7.95 -52.49 -0.42 1.61 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -34.60 383.46 -8.14 -42.74 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.93 Total: 9.99 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.85 Total: -14.17 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.33 Total: -36.91 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.85 Total: -25.36 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.62 Total: 17.94 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.60 -8.14 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912658093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.052 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds