Wall clock time and date at job start Tue Mar 31 2020 17:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.87051 * 2 1 4 4 O 1.42898 * 109.47398 * 301.01379 * 3 2 1 5 5 C 1.54322 * 110.00800 * 238.90479 * 2 1 3 6 6 C 1.55151 * 102.94374 * 262.69956 * 5 2 1 7 7 H 1.09007 * 111.00935 * 82.60942 * 6 5 2 8 8 O 1.42898 * 111.00862 * 206.42432 * 6 5 2 9 9 C 1.55129 * 101.48689 * 324.33294 * 6 5 2 10 10 N 1.47024 * 109.88449 * 121.02076 * 2 1 3 11 11 C 1.34778 * 125.64342 * 300.59174 * 10 2 1 12 12 O 1.21278 * 120.00369 * 0.02562 * 11 10 2 13 13 C 1.50694 * 119.99530 * 179.73031 * 11 10 2 14 14 C 1.53003 * 109.47190 * 180.27671 * 13 11 10 15 15 H 1.09000 * 109.46834 * 54.99546 * 14 13 11 16 16 C 1.50703 * 109.46916 * 294.99766 * 14 13 11 17 17 H 1.07998 * 119.99924 * 325.12433 * 16 14 13 18 18 C 1.37880 * 119.99968 * 145.12539 * 16 14 13 19 19 N 1.31511 * 119.99893 * 184.98745 * 18 16 14 20 20 Si 1.86794 * 120.00173 * 4.98907 * 18 16 14 21 21 H 1.48502 * 109.47315 * 84.72517 * 20 18 16 22 22 H 1.48496 * 109.47263 * 204.73046 * 20 18 16 23 23 H 1.48501 * 109.46960 * 324.72849 * 20 18 16 24 24 C 1.50701 * 109.47351 * 174.99840 * 14 13 11 25 25 C 1.38225 * 120.00085 * 64.69006 * 24 14 13 26 26 C 1.38236 * 119.99987 * 179.79091 * 25 24 14 27 27 C 1.38234 * 119.99858 * 0.45776 * 26 25 24 28 28 C 1.38234 * 120.00119 * 359.77219 * 27 26 25 29 29 C 1.38236 * 119.99820 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47193 * 298.97679 * 1 2 3 31 31 H 1.09001 * 109.47547 * 58.98591 * 1 2 3 32 32 H 1.09007 * 109.47260 * 178.98169 * 1 2 3 33 33 H 1.08998 * 109.47333 * 61.02512 * 3 2 1 34 34 H 1.09006 * 109.46882 * 181.01931 * 3 2 1 35 35 H 0.96704 * 113.99896 * 179.97438 * 4 3 2 36 36 H 1.08998 * 110.72260 * 21.06702 * 5 2 1 37 37 H 1.09006 * 110.71979 * 144.34117 * 5 2 1 38 38 H 0.96709 * 114.00375 * 179.97438 * 8 6 5 39 39 H 1.08996 * 110.50193 * 278.45571 * 9 6 5 40 40 H 1.09004 * 110.34611 * 156.05595 * 9 6 5 41 41 H 1.08999 * 109.46998 * 300.27059 * 13 11 10 42 42 H 1.08998 * 109.47677 * 60.27348 * 13 11 10 43 43 H 0.96992 * 120.00227 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.00447 * 359.97438 * 25 24 14 45 45 H 1.08006 * 120.00098 * 180.25289 * 26 25 24 46 46 H 1.08005 * 120.00110 * 179.79309 * 27 26 25 47 47 H 1.07993 * 120.00054 * 179.97438 * 28 27 26 48 48 H 1.07996 * 119.99773 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 8 1.5591 2.1229 -1.1546 5 6 2.0580 -0.7489 -1.2417 6 6 2.3574 -2.1679 -0.6905 7 1 1.4522 -2.7744 -0.6599 8 8 3.3760 -2.8116 -1.4587 9 6 2.8644 -1.8433 0.7393 10 7 2.0300 -0.7125 1.1849 11 6 1.7730 -0.3829 2.4662 12 8 1.0738 0.5757 2.7172 13 6 2.3491 -1.2094 3.5868 14 6 1.9024 -0.6291 4.9302 15 1 0.8147 -0.5628 4.9537 16 6 2.4934 0.7462 5.1047 17 1 3.4787 0.9634 4.7195 18 6 1.7762 1.7272 5.7561 19 7 2.2488 2.9526 5.8228 20 14 0.1332 1.3157 6.5439 21 1 0.3604 0.7687 7.9058 22 1 -0.6935 2.5457 6.6361 23 1 -0.5733 0.3052 5.7163 24 6 2.3754 -1.5244 6.0464 25 6 3.7287 -1.6839 6.2781 26 6 4.1625 -2.5017 7.3047 27 6 3.2430 -3.1675 8.0935 28 6 1.8897 -3.0117 7.8588 29 6 1.4559 -2.1906 6.8348 30 1 -0.3633 0.4978 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3634 -1.0276 -0.0183 33 1 1.7053 1.9498 0.8990 34 1 3.1399 1.4313 -0.0183 35 1 1.8495 3.0430 -1.2198 36 1 1.2960 -0.7904 -2.0200 37 1 2.9683 -0.2807 -1.6163 38 1 3.5975 -3.7013 -1.1513 39 1 3.9148 -1.5533 0.7152 40 1 2.7220 -2.7016 1.3959 41 1 1.9955 -2.2367 3.4994 42 1 3.4373 -1.1934 3.5279 43 1 1.7441 3.6428 6.2807 44 1 4.4472 -1.1672 5.6591 45 1 5.2199 -2.6231 7.4884 46 1 3.5819 -3.8091 8.8935 47 1 1.1714 -3.5321 8.4747 48 1 0.3986 -2.0692 6.6511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912658093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:17 Heat of formation + Delta-G solvation = -129.695212 kcal Electronic energy + Delta-G solvation = -30060.526349 eV Core-core repulsion = 26079.300430 eV Total energy + Delta-G solvation = -3981.225919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.62132 -40.15253 -39.01371 -37.82546 -36.44698 -35.81544 -33.84497 -33.00855 -31.61074 -31.05944 -30.26637 -27.88994 -27.64794 -26.31029 -24.50060 -23.36994 -23.05647 -21.98525 -20.82868 -19.48470 -19.05728 -18.53471 -18.34125 -17.93859 -17.22239 -16.68388 -16.44893 -16.12282 -15.93808 -15.81809 -15.48057 -15.23088 -15.00780 -14.74458 -14.54671 -14.25346 -14.18557 -14.00692 -13.86611 -13.67843 -13.53331 -13.35582 -13.18491 -12.92425 -12.83288 -12.76155 -12.28086 -12.13820 -12.02914 -11.89872 -11.84313 -11.58129 -11.48057 -11.15289 -11.03032 -10.96527 -10.69985 -10.38632 -9.64335 -9.63771 -9.31955 -8.23918 -6.19810 0.66643 0.71732 1.27837 1.31280 1.36724 1.81800 1.93449 2.37455 3.06707 3.13042 3.20605 3.28948 3.46879 3.67209 3.87416 3.98125 4.11180 4.12010 4.15854 4.28260 4.29523 4.31218 4.41829 4.47026 4.48581 4.58648 4.61572 4.67773 4.72603 4.82396 4.84120 4.86865 4.90391 4.94714 5.04874 5.09489 5.18876 5.29422 5.36147 5.39522 5.57664 5.68100 5.75705 5.81593 6.00969 6.31401 6.34887 6.59239 6.72080 6.78856 6.91662 7.42880 7.44565 8.93341 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004390 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.726882 B = 6377.256545 C = 7916.685539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.166 3.834 3 C 0.078 3.922 4 O -0.571 6.571 5 C -0.100 4.100 6 C 0.104 3.896 7 H 0.094 0.906 8 O -0.565 6.565 9 C 0.067 3.933 10 N -0.618 5.618 11 C 0.527 3.473 12 O -0.545 6.545 13 C -0.103 4.103 14 C 0.049 3.951 15 H 0.037 0.963 16 C -0.461 4.461 17 H 0.034 0.966 18 C 0.026 3.974 19 N -0.952 5.952 20 Si 0.919 3.081 21 H -0.266 1.266 22 H -0.301 1.301 23 H -0.251 1.251 24 C -0.063 4.063 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.123 4.123 29 C -0.157 4.157 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.396 0.604 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.258 0.742 44 H 0.109 0.891 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -16.887 -10.472 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 C -0.001 4.001 4 O -0.378 6.378 5 C -0.138 4.138 6 C 0.044 3.956 7 H 0.112 0.888 8 O -0.373 6.373 9 C -0.056 4.056 10 N -0.356 5.356 11 C 0.317 3.683 12 O -0.421 6.421 13 C -0.143 4.143 14 C 0.030 3.970 15 H 0.056 0.944 16 C -0.498 4.498 17 H 0.052 0.948 18 C -0.170 4.170 19 N -0.593 5.593 20 Si 0.746 3.254 21 H -0.191 1.191 22 H -0.228 1.228 23 H -0.175 1.175 24 C -0.064 4.064 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.140 4.140 29 C -0.175 4.175 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.245 0.755 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.253 0.747 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.127 0.873 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.158 0.842 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.838 -16.197 -10.620 19.386 hybrid contribution -0.372 1.228 1.097 1.688 sum 0.466 -14.969 -9.523 17.747 Atomic orbital electron populations 1.21989 0.93750 1.02328 1.02101 1.20830 0.94975 0.90606 0.85504 1.22298 0.96676 0.93487 0.87674 1.86303 1.76848 1.30344 1.44269 1.22544 1.02377 0.93651 0.95201 1.22867 0.91058 0.93568 0.88074 0.88794 1.86492 1.58142 1.35722 1.56983 1.23267 0.95301 0.89529 0.97486 1.48584 1.51902 1.31146 1.03986 1.20812 0.80103 0.84814 0.82611 1.90723 1.38869 1.29317 1.83169 1.21545 1.01862 0.98689 0.92196 1.18156 0.96742 0.92392 0.89751 0.94438 1.20773 1.01602 0.93795 1.33664 0.94801 1.25558 1.00184 0.94606 0.96681 1.70022 1.40864 1.02530 1.45917 0.86170 0.82011 0.77528 0.79642 1.19073 1.22773 1.17502 1.20488 0.94227 0.93909 0.97762 1.20999 0.95117 0.98502 0.99010 1.21407 1.00643 0.96872 0.95202 1.21346 0.92807 1.01065 1.00545 1.21337 0.96881 0.98570 0.97257 1.21206 0.98952 0.99319 0.98004 0.94487 0.90495 0.91154 0.95703 0.93813 0.75473 0.88329 0.90319 0.74725 0.90718 0.87880 0.87823 0.89031 0.93358 0.87283 0.84248 0.83527 0.84192 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.25 71.98 0.59 -3.65 16 2 C 0.17 4.79 0.65 3.95 0.00 4.79 16 3 C 0.08 2.54 5.84 71.98 0.42 2.96 16 4 O -0.57 -15.54 12.67 -148.98 -1.89 -17.43 16 5 C -0.10 -2.18 5.49 31.78 0.17 -2.01 16 6 C 0.10 1.76 4.44 32.06 0.14 1.91 16 7 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 8 O -0.57 -8.42 13.47 -148.98 -2.01 -10.43 16 9 C 0.07 1.36 6.44 86.93 0.56 1.92 16 10 N -0.62 -18.72 2.82 -764.84 -2.16 -20.87 16 11 C 0.53 20.94 7.17 87.66 0.63 21.57 16 12 O -0.55 -27.56 12.54 -3.02 -0.04 -27.60 16 13 C -0.10 -3.77 3.97 29.85 0.12 -3.65 16 14 C 0.05 2.23 1.21 -12.28 -0.01 2.21 16 15 H 0.04 1.86 4.70 -2.39 -0.01 1.85 16 16 C -0.46 -26.05 6.87 25.60 0.18 -25.88 16 17 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 18 C 0.03 1.59 5.47 84.66 0.46 2.05 16 19 N -0.95 -62.37 13.96 21.45 0.30 -62.07 16 20 Si 0.92 48.33 27.15 68.60 1.86 50.20 16 21 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 23 H -0.25 -12.56 6.06 99.48 0.60 -11.96 16 24 C -0.06 -2.55 4.55 -19.87 -0.09 -2.64 16 25 C -0.12 -4.35 8.87 22.27 0.20 -4.15 16 26 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 27 C -0.14 -3.79 10.05 22.27 0.22 -3.56 16 28 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 29 C -0.16 -5.70 9.43 22.27 0.21 -5.49 16 30 H 0.04 1.38 6.69 -2.39 -0.02 1.36 16 31 H 0.08 2.10 7.65 -2.39 -0.02 2.08 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.02 1.04 6.84 -2.39 -0.02 1.02 16 34 H 0.04 1.38 8.13 -2.38 -0.02 1.37 16 35 H 0.40 7.69 9.12 -74.05 -0.68 7.01 16 36 H 0.10 1.94 7.83 -2.39 -0.02 1.92 16 37 H 0.08 1.84 7.84 -2.38 -0.02 1.82 16 38 H 0.40 2.13 9.12 -74.05 -0.68 1.46 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.62 7.47 -2.39 -0.02 1.61 16 41 H 0.10 3.00 7.85 -2.39 -0.02 2.99 16 42 H 0.09 3.16 7.86 -2.39 -0.02 3.15 16 43 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 44 H 0.11 4.13 7.80 -2.91 -0.02 4.11 16 45 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 46 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 47 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 48 H 0.11 3.85 7.95 -2.91 -0.02 3.82 16 Total: -1.00 -81.46 383.46 -0.15 -81.61 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.48 Total: 27.07 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.25 Total: -20.48 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.86 Total: -82.94 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -3.93 Total: -55.45 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.86 Total: 50.20 kcal Total: -81.46 -0.15 -81.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912658093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.085 kcal (2) G-P(sol) polarization free energy of solvation -81.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds