Wall clock time and date at job start Tue Mar 31 2020 17:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99877 * 2 1 4 4 C 1.38217 * 119.99742 * 180.22948 * 3 2 1 5 5 C 1.38254 * 120.00252 * 359.80383 * 4 3 2 6 6 C 1.38214 * 119.99783 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00007 * 179.77991 * 2 1 3 8 8 C 1.50693 * 120.00157 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.47222 * 4.94478 * 8 7 2 10 10 C 1.52995 * 109.47265 * 124.94368 * 8 7 2 11 11 C 1.50706 * 109.47264 * 244.94616 * 8 7 2 12 12 O 1.20823 * 119.99747 * 0.02562 * 11 8 7 13 13 O 1.34228 * 119.99680 * 180.02562 * 11 8 7 14 14 C 1.45206 * 116.99557 * 180.02562 * 13 11 8 15 15 H 1.09001 * 109.46925 * 329.99365 * 14 13 11 16 16 C 1.53002 * 109.47388 * 89.99705 * 14 13 11 17 17 C 1.50697 * 109.46724 * 210.00158 * 14 13 11 18 18 O 1.21284 * 120.00520 * 354.99023 * 17 14 13 19 19 N 1.34783 * 120.00099 * 174.99782 * 17 14 13 20 20 C 1.46498 * 119.99681 * 359.97438 * 19 17 14 21 21 C 1.46489 * 120.00125 * 179.97438 * 19 17 14 22 22 C 1.50694 * 109.47286 * 90.00372 * 21 19 17 23 23 H 1.08001 * 120.00183 * 359.97438 * 22 21 19 24 24 C 1.37877 * 120.00394 * 180.02562 * 22 21 19 25 25 N 1.31516 * 120.00043 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00229 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47220 * 89.99916 * 26 24 22 28 28 H 1.48502 * 109.47240 * 209.99950 * 26 24 22 29 29 H 1.48503 * 109.47121 * 329.99590 * 26 24 22 30 30 H 1.08995 * 109.47753 * 264.36284 * 1 2 3 31 31 H 1.08996 * 109.47110 * 24.36620 * 1 2 3 32 32 H 1.09008 * 109.46564 * 144.36003 * 1 2 3 33 33 H 1.07999 * 120.00418 * 0.05187 * 3 2 1 34 34 H 1.08003 * 119.99606 * 179.82847 * 4 3 2 35 35 H 1.08000 * 120.00417 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.00145 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.47339 * 179.97438 * 10 8 7 38 38 H 1.09002 * 109.47546 * 300.00178 * 10 8 7 39 39 H 1.09005 * 109.47334 * 60.00247 * 10 8 7 40 40 H 1.08995 * 109.46951 * 300.00089 * 16 14 13 41 41 H 1.09002 * 109.46627 * 180.02562 * 16 14 13 42 42 H 1.08998 * 109.46689 * 60.00200 * 16 14 13 43 43 H 1.09000 * 109.47260 * 89.99807 * 20 19 17 44 44 H 1.08996 * 109.47130 * 210.00319 * 20 19 17 45 45 H 1.09000 * 109.47230 * 329.99605 * 20 19 17 46 46 H 1.09003 * 109.47488 * 210.00329 * 21 19 17 47 47 H 1.09004 * 109.47787 * 329.99717 * 21 19 17 48 48 H 0.96995 * 120.00533 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0048 5 6 4.2718 0.0000 -0.0055 6 6 3.5807 -1.1969 -0.0009 7 6 2.1981 -1.1970 0.0046 8 6 1.4447 -2.5020 0.0090 9 1 0.3763 -2.3051 -0.0807 10 6 1.9057 -3.3611 -1.1701 11 6 1.7141 -3.2333 1.2990 12 8 2.4428 -2.7445 2.1296 13 8 1.1445 -4.4275 1.5249 14 6 1.4484 -5.0741 2.7891 15 1 2.4466 -4.7825 3.1156 16 6 0.4225 -4.6460 3.8405 17 6 1.3942 -6.5699 2.6140 18 8 1.0377 -7.0442 1.5562 19 7 1.7416 -7.3807 3.6331 20 6 2.1726 -6.8079 4.9107 21 6 1.6884 -8.8347 3.4630 22 6 3.0159 -9.3294 2.9491 23 1 3.8188 -8.6304 2.7669 24 6 3.2051 -10.6741 2.7105 25 7 2.2272 -11.5252 2.9319 26 14 4.8504 -11.2871 2.0728 27 1 5.7328 -11.6202 3.2198 28 1 4.6387 -12.5000 1.2425 29 1 5.4875 -10.2284 1.2491 30 1 -0.3634 -0.1009 1.0226 31 1 -0.3633 0.9361 -0.4240 32 1 -0.3633 -0.8353 -0.5989 33 1 1.6583 2.1327 0.0008 34 1 4.1204 2.1327 -0.0076 35 1 5.3517 0.0000 -0.0088 36 1 4.1207 -2.1323 -0.0010 37 1 1.3610 -4.3053 -1.1666 38 1 1.7108 -2.8322 -2.1031 39 1 2.9740 -3.5581 -1.0804 40 1 0.4618 -3.5642 3.9670 41 1 0.6510 -5.1311 4.7895 42 1 -0.5756 -4.9377 3.5139 43 1 1.3061 -6.6686 5.5572 44 1 2.8800 -7.4834 5.3916 45 1 2.6524 -5.8453 4.7339 46 1 1.4721 -9.3051 4.4223 47 1 0.9049 -9.0888 2.7491 48 1 2.3604 -12.4713 2.7644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923904205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:51 Heat of formation + Delta-G solvation = -97.072165 kcal Electronic energy + Delta-G solvation = -28964.390247 eV Core-core repulsion = 24984.578970 eV Total energy + Delta-G solvation = -3979.811277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99351 -39.72145 -38.79168 -36.38421 -34.92747 -34.63835 -32.94700 -32.82599 -31.52910 -29.72472 -27.72038 -27.09436 -26.19958 -25.41663 -24.33531 -23.10837 -22.08860 -21.40175 -20.05267 -18.84994 -17.77242 -16.96751 -16.69485 -16.53119 -16.07733 -15.84927 -15.40066 -15.32777 -14.80895 -14.60107 -14.21694 -13.91557 -13.89929 -13.60493 -13.32387 -13.27087 -12.87499 -12.82262 -12.59022 -12.39743 -12.28530 -12.17002 -12.11870 -12.04275 -11.81219 -11.66226 -11.40654 -11.21153 -11.13080 -10.94003 -10.92147 -10.69445 -10.57996 -10.31622 -10.18389 -9.66636 -8.98063 -8.91162 -8.80098 -8.46345 -7.74074 -6.07323 -4.12300 1.08427 1.22701 2.19039 2.54526 3.25362 3.29036 3.35758 3.40908 3.57822 3.90114 4.26870 4.42217 4.50514 4.68477 4.70386 4.77190 4.87164 4.92338 4.95740 5.01973 5.05679 5.09628 5.27315 5.31457 5.34777 5.42615 5.48599 5.54517 5.58925 5.64966 5.66177 5.71096 5.82681 5.84985 5.92291 5.98794 6.04268 6.20760 6.27686 6.34082 6.41973 6.46303 6.81502 6.97112 7.37389 7.45155 7.76210 7.88860 8.18640 8.27997 8.83334 8.98214 9.52823 11.00836 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002657 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.871656 B =10534.192108 C =11150.485709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.083 4.083 7 C -0.074 4.074 8 C -0.046 4.046 9 H 0.120 0.880 10 C -0.145 4.145 11 C 0.464 3.536 12 O -0.502 6.502 13 O -0.323 6.323 14 C 0.069 3.931 15 H 0.104 0.896 16 C -0.169 4.169 17 C 0.509 3.491 18 O -0.519 6.519 19 N -0.596 5.596 20 C 0.076 3.924 21 C 0.247 3.753 22 C -0.529 4.529 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 24.846 -3.083 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.101 4.101 7 C -0.074 4.074 8 C -0.065 4.065 9 H 0.138 0.862 10 C -0.202 4.202 11 C 0.307 3.693 12 O -0.389 6.389 13 O -0.238 6.238 14 C 0.011 3.989 15 H 0.122 0.878 16 C -0.227 4.227 17 C 0.293 3.707 18 O -0.395 6.395 19 N -0.330 5.330 20 C -0.068 4.068 21 C 0.128 3.872 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.326 24.476 -3.382 24.818 hybrid contribution 1.157 -0.375 -0.003 1.216 sum -1.169 24.100 -3.385 24.365 Atomic orbital electron populations 1.20908 0.91276 1.02991 1.02673 1.19715 0.95940 0.92443 0.99372 1.20955 0.94275 0.97137 1.01806 1.21135 0.94312 0.98002 0.99772 1.21097 0.99926 0.92350 1.01024 1.20959 0.93409 0.98366 0.97398 1.19142 0.93659 0.92464 1.02121 1.20018 1.02921 0.92171 0.91344 0.86242 1.21840 1.02585 1.00088 0.95692 1.23599 0.77096 0.79915 0.88733 1.90654 1.35113 1.66634 1.46544 1.86609 1.65874 1.32249 1.39082 1.22626 1.01653 0.92149 0.82496 0.87791 1.22270 0.99441 1.02424 0.98539 1.19769 0.79381 0.86633 0.84914 1.90701 1.46531 1.76273 1.25977 1.48070 1.64356 1.09213 1.11311 1.21842 0.99548 0.98931 0.86450 1.19349 0.98259 0.71655 0.97936 1.21421 0.98188 0.92595 1.44530 0.92445 1.24931 0.97136 0.96624 0.95357 1.69927 1.31719 1.02971 1.48682 0.86485 0.83605 0.78393 0.78895 1.20599 1.21020 1.19868 0.90948 0.91262 0.90962 0.86051 0.86144 0.86029 0.86155 0.89958 0.90853 0.91778 0.91384 0.89323 0.90962 0.93122 0.90292 0.92377 0.94611 0.93632 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.27 36.01 0.33 -0.58 16 2 C -0.07 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -1.12 9.68 -39.58 -0.38 -1.50 16 4 C -0.11 -1.04 10.05 -39.58 -0.40 -1.43 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.08 -0.97 8.21 -39.58 -0.33 -1.29 16 7 C -0.07 -0.84 4.32 -104.63 -0.45 -1.29 16 8 C -0.05 -0.52 2.82 -92.93 -0.26 -0.78 16 9 H 0.12 1.13 5.55 -51.93 -0.29 0.84 16 10 C -0.14 -1.56 8.88 37.15 0.33 -1.23 16 11 C 0.46 6.88 7.12 36.01 0.26 7.14 16 12 O -0.50 -8.27 14.60 -18.75 -0.27 -8.55 16 13 O -0.32 -5.45 9.32 -45.88 -0.43 -5.88 16 14 C 0.07 1.17 2.16 -27.88 -0.06 1.11 16 15 H 0.10 1.71 6.14 -51.93 -0.32 1.39 16 16 C -0.17 -2.24 9.27 37.16 0.34 -1.90 16 17 C 0.51 10.94 7.10 -10.98 -0.08 10.86 16 18 O -0.52 -13.45 16.09 -14.05 -0.23 -13.67 16 19 N -0.60 -12.67 2.86 -182.97 -0.52 -13.19 16 20 C 0.08 1.19 8.92 59.85 0.53 1.73 16 21 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 22 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 23 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 26 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.40 8.05 -51.93 -0.42 -0.01 16 32 H 0.07 0.48 6.35 -51.92 -0.33 0.15 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.41 7.27 -52.48 -0.38 1.03 16 37 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.71 7.12 -51.93 -0.37 0.34 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.04 5.12 -51.93 -0.27 0.77 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.66 7.02 -51.93 -0.36 0.29 16 44 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 45 H 0.06 0.78 6.08 -51.93 -0.32 0.47 16 46 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 47 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -34.98 393.98 -8.62 -43.59 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.20 Total: 0.07 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.62 Total: 0.55 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.21 Total: -38.91 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.93 Total: -28.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.98 -8.62 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923904205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.478 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds