Wall clock time and date at job start Tue Mar 31 2020 17:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99877 * 2 1 4 4 C 1.38217 * 119.99742 * 180.22948 * 3 2 1 5 5 C 1.38254 * 120.00252 * 359.80383 * 4 3 2 6 6 C 1.38214 * 119.99783 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00007 * 179.77991 * 2 1 3 8 8 C 1.50693 * 120.00157 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.47222 * 4.94478 * 8 7 2 10 10 C 1.52995 * 109.47265 * 124.94368 * 8 7 2 11 11 C 1.50706 * 109.47264 * 244.94616 * 8 7 2 12 12 O 1.20823 * 119.99747 * 0.02562 * 11 8 7 13 13 O 1.34228 * 119.99680 * 180.02562 * 11 8 7 14 14 C 1.45206 * 116.99557 * 180.02562 * 13 11 8 15 15 H 1.09001 * 109.46925 * 329.99365 * 14 13 11 16 16 C 1.53002 * 109.47388 * 89.99705 * 14 13 11 17 17 C 1.50697 * 109.46724 * 210.00158 * 14 13 11 18 18 O 1.21284 * 120.00520 * 354.99023 * 17 14 13 19 19 N 1.34783 * 120.00099 * 174.99782 * 17 14 13 20 20 C 1.46498 * 119.99681 * 359.97438 * 19 17 14 21 21 C 1.46489 * 120.00125 * 179.97438 * 19 17 14 22 22 C 1.50694 * 109.47286 * 90.00372 * 21 19 17 23 23 H 1.08001 * 120.00183 * 359.97438 * 22 21 19 24 24 C 1.37877 * 120.00394 * 180.02562 * 22 21 19 25 25 N 1.31516 * 120.00043 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00229 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47220 * 89.99916 * 26 24 22 28 28 H 1.48502 * 109.47240 * 209.99950 * 26 24 22 29 29 H 1.48503 * 109.47121 * 329.99590 * 26 24 22 30 30 H 1.08995 * 109.47753 * 264.36284 * 1 2 3 31 31 H 1.08996 * 109.47110 * 24.36620 * 1 2 3 32 32 H 1.09008 * 109.46564 * 144.36003 * 1 2 3 33 33 H 1.07999 * 120.00418 * 0.05187 * 3 2 1 34 34 H 1.08003 * 119.99606 * 179.82847 * 4 3 2 35 35 H 1.08000 * 120.00417 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.00145 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.47339 * 179.97438 * 10 8 7 38 38 H 1.09002 * 109.47546 * 300.00178 * 10 8 7 39 39 H 1.09005 * 109.47334 * 60.00247 * 10 8 7 40 40 H 1.08995 * 109.46951 * 300.00089 * 16 14 13 41 41 H 1.09002 * 109.46627 * 180.02562 * 16 14 13 42 42 H 1.08998 * 109.46689 * 60.00200 * 16 14 13 43 43 H 1.09000 * 109.47260 * 89.99807 * 20 19 17 44 44 H 1.08996 * 109.47130 * 210.00319 * 20 19 17 45 45 H 1.09000 * 109.47230 * 329.99605 * 20 19 17 46 46 H 1.09003 * 109.47488 * 210.00329 * 21 19 17 47 47 H 1.09004 * 109.47787 * 329.99717 * 21 19 17 48 48 H 0.96995 * 120.00533 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0048 5 6 4.2718 0.0000 -0.0055 6 6 3.5807 -1.1969 -0.0009 7 6 2.1981 -1.1970 0.0046 8 6 1.4447 -2.5020 0.0090 9 1 0.3763 -2.3051 -0.0807 10 6 1.9057 -3.3611 -1.1701 11 6 1.7141 -3.2333 1.2990 12 8 2.4428 -2.7445 2.1296 13 8 1.1445 -4.4275 1.5249 14 6 1.4484 -5.0741 2.7891 15 1 2.4466 -4.7825 3.1156 16 6 0.4225 -4.6460 3.8405 17 6 1.3942 -6.5699 2.6140 18 8 1.0377 -7.0442 1.5562 19 7 1.7416 -7.3807 3.6331 20 6 2.1726 -6.8079 4.9107 21 6 1.6884 -8.8347 3.4630 22 6 3.0159 -9.3294 2.9491 23 1 3.8188 -8.6304 2.7669 24 6 3.2051 -10.6741 2.7105 25 7 2.2272 -11.5252 2.9319 26 14 4.8504 -11.2871 2.0728 27 1 5.7328 -11.6202 3.2198 28 1 4.6387 -12.5000 1.2425 29 1 5.4875 -10.2284 1.2491 30 1 -0.3634 -0.1009 1.0226 31 1 -0.3633 0.9361 -0.4240 32 1 -0.3633 -0.8353 -0.5989 33 1 1.6583 2.1327 0.0008 34 1 4.1204 2.1327 -0.0076 35 1 5.3517 0.0000 -0.0088 36 1 4.1207 -2.1323 -0.0010 37 1 1.3610 -4.3053 -1.1666 38 1 1.7108 -2.8322 -2.1031 39 1 2.9740 -3.5581 -1.0804 40 1 0.4618 -3.5642 3.9670 41 1 0.6510 -5.1311 4.7895 42 1 -0.5756 -4.9377 3.5139 43 1 1.3061 -6.6686 5.5572 44 1 2.8800 -7.4834 5.3916 45 1 2.6524 -5.8453 4.7339 46 1 1.4721 -9.3051 4.4223 47 1 0.9049 -9.0888 2.7491 48 1 2.3604 -12.4713 2.7644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923904205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:50 Heat of formation + Delta-G solvation = -116.048143 kcal Electronic energy + Delta-G solvation = -28965.213107 eV Core-core repulsion = 24984.578970 eV Total energy + Delta-G solvation = -3980.634137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16286 -40.90155 -40.09159 -37.66734 -36.72083 -35.53347 -34.90012 -33.59694 -32.95261 -30.52563 -29.61381 -27.73659 -27.68990 -26.50452 -25.81511 -24.53419 -23.25895 -22.28875 -21.04509 -20.44333 -18.97532 -18.68656 -18.24533 -17.66494 -17.39919 -17.19991 -16.77698 -16.38241 -16.29506 -15.95367 -15.50873 -14.91126 -14.85176 -14.70862 -14.48886 -14.30011 -14.09670 -13.98708 -13.77671 -13.62698 -13.50061 -13.36511 -13.28611 -13.04535 -13.03499 -12.84478 -12.79275 -12.64288 -12.58734 -12.53927 -12.24187 -11.94664 -11.88861 -11.74299 -11.69098 -11.42589 -10.66418 -10.63845 -9.73100 -9.54286 -9.52921 -8.25670 -6.40259 0.31295 0.48713 1.01936 1.33222 1.35694 1.37955 1.48160 1.59995 2.29233 2.41590 2.85423 3.04261 3.37835 3.39168 3.58604 3.71905 3.81281 3.88627 3.99133 4.08403 4.09389 4.23766 4.30309 4.45652 4.49306 4.57655 4.58691 4.65575 4.70714 4.76183 4.81469 4.84509 4.88438 4.93055 4.95386 5.06214 5.10399 5.14981 5.18248 5.28105 5.33348 5.48936 5.56172 5.61131 5.67998 5.75952 6.01435 6.10840 6.50207 6.63161 6.68226 7.18153 7.33764 8.81695 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002657 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.871656 B =10534.192108 C =11150.485709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.091 4.091 8 C -0.040 4.040 9 H 0.141 0.859 10 C -0.142 4.142 11 C 0.464 3.536 12 O -0.520 6.520 13 O -0.340 6.340 14 C 0.078 3.922 15 H 0.111 0.889 16 C -0.161 4.161 17 C 0.500 3.500 18 O -0.577 6.577 19 N -0.600 5.600 20 C 0.069 3.931 21 C 0.260 3.740 22 C -0.547 4.547 23 H 0.050 0.950 24 C 0.011 3.989 25 N -0.925 5.925 26 Si 0.966 3.034 27 H -0.262 1.262 28 H -0.279 1.279 29 H -0.276 1.276 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.034 0.966 47 H 0.002 0.998 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 27.430 -2.594 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.156 4.156 6 C -0.124 4.124 7 C -0.091 4.091 8 C -0.058 4.058 9 H 0.159 0.841 10 C -0.199 4.199 11 C 0.307 3.693 12 O -0.408 6.408 13 O -0.256 6.256 14 C 0.020 3.980 15 H 0.128 0.872 16 C -0.218 4.218 17 C 0.287 3.713 18 O -0.456 6.456 19 N -0.332 5.332 20 C -0.073 4.073 21 C 0.139 3.861 22 C -0.585 4.585 23 H 0.068 0.932 24 C -0.189 4.189 25 N -0.565 5.565 26 Si 0.791 3.209 27 H -0.187 1.187 28 H -0.204 1.204 29 H -0.201 1.201 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.020 0.980 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.871 27.092 -2.845 27.305 hybrid contribution 1.015 -1.120 -0.151 1.519 sum -0.856 25.971 -2.996 26.158 Atomic orbital electron populations 1.20974 0.89601 1.04362 1.02996 1.20040 0.97308 0.92147 0.98630 1.21337 0.94506 0.97913 1.00766 1.21489 0.94715 0.98542 0.98545 1.21332 1.00783 0.92372 1.01126 1.21024 0.93939 0.98529 0.98866 1.19197 0.93595 0.92783 1.03495 1.20127 1.04320 0.92001 0.89401 0.84119 1.21819 1.01651 0.99644 0.96760 1.24297 0.76314 0.79096 0.89565 1.90631 1.35843 1.66894 1.47422 1.86625 1.66349 1.33313 1.39296 1.22525 1.03304 0.88546 0.83655 0.87176 1.22277 0.98011 1.03672 0.97827 1.20625 0.77993 0.88766 0.83914 1.90661 1.49046 1.77729 1.28185 1.48052 1.64084 1.07563 1.13483 1.22183 1.01213 0.99668 0.84235 1.18848 0.96026 0.74857 0.96330 1.21672 0.98802 0.93003 1.45068 0.93156 1.25821 1.00944 0.96787 0.95338 1.70033 1.33723 1.03413 1.49305 0.85435 0.79150 0.77638 0.78715 1.18679 1.20407 1.20060 0.90885 0.89325 0.90390 0.83467 0.83630 0.84824 0.87580 0.91516 0.88425 0.92794 0.89539 0.87439 0.91152 0.89637 0.90634 0.89691 0.94817 0.97994 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.27 71.24 0.66 -0.85 16 2 C -0.08 -1.44 5.88 -19.86 -0.12 -1.56 16 3 C -0.13 -1.97 9.68 22.27 0.22 -1.75 16 4 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 5 C -0.14 -2.66 10.05 22.27 0.22 -2.44 16 6 C -0.11 -2.44 8.21 22.27 0.18 -2.26 16 7 C -0.09 -1.98 4.32 -19.87 -0.09 -2.06 16 8 C -0.04 -0.89 2.82 -12.29 -0.03 -0.93 16 9 H 0.14 2.48 5.55 -2.38 -0.01 2.47 16 10 C -0.14 -3.08 8.88 71.98 0.64 -2.44 16 11 C 0.46 13.67 7.12 71.24 0.51 14.18 16 12 O -0.52 -16.89 14.60 21.97 0.32 -16.57 16 13 O -0.34 -11.57 9.32 -45.06 -0.42 -11.99 16 14 C 0.08 2.59 2.16 29.85 0.06 2.66 16 15 H 0.11 3.52 6.14 -2.39 -0.01 3.51 16 16 C -0.16 -3.94 9.27 71.98 0.67 -3.27 16 17 C 0.50 22.03 7.10 87.66 0.62 22.65 16 18 O -0.58 -31.40 16.09 15.70 0.25 -31.15 16 19 N -0.60 -25.82 2.86 -851.16 -2.43 -28.25 16 20 C 0.07 2.04 8.92 127.77 1.14 3.18 16 21 C 0.26 14.06 5.16 85.63 0.44 14.50 16 22 C -0.55 -31.82 9.39 25.60 0.24 -31.58 16 23 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 24 C 0.01 0.61 5.46 84.65 0.46 1.07 16 25 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 26 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.74 8.05 -2.39 -0.02 0.72 16 32 H 0.08 0.86 6.35 -2.38 -0.02 0.84 16 33 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.11 2.63 7.27 -2.91 -0.02 2.61 16 37 H 0.07 1.65 8.11 -2.38 -0.02 1.63 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.26 7.12 -2.38 -0.02 1.24 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 2.19 5.12 -2.39 -0.01 2.18 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.98 7.02 -2.39 -0.02 1.96 16 44 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 45 H 0.08 2.08 6.08 -2.39 -0.01 2.07 16 46 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 47 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 48 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -79.01 393.98 7.05 -71.96 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.96 Total: 16.80 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.05 Total: 7.49 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.15 Total: -83.78 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: 0.15 Total: -59.71 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -79.01 7.05 -71.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923904205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.084 kcal (2) G-P(sol) polarization free energy of solvation -79.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds