Wall clock time and date at job start Tue Mar 31 2020 17:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 119.99881 * 2 1 4 4 C 1.38210 * 119.99707 * 180.25235 * 3 2 1 5 5 C 1.38257 * 120.00467 * 359.53023 * 4 3 2 6 6 C 1.38210 * 119.99606 * 0.40423 * 5 4 3 7 7 C 1.38207 * 119.99993 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.00063 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.46948 * 4.09339 * 8 7 2 10 10 C 1.52999 * 109.47069 * 244.09619 * 8 7 2 11 11 C 1.50695 * 109.46823 * 124.09983 * 8 7 2 12 12 O 1.20826 * 120.00670 * 359.97438 * 11 8 7 13 13 O 1.34240 * 119.99862 * 180.02562 * 11 8 7 14 14 C 1.45194 * 116.99935 * 179.97438 * 13 11 8 15 15 H 1.09002 * 109.47505 * 30.00332 * 14 13 11 16 16 C 1.53002 * 109.47387 * 269.99836 * 14 13 11 17 17 C 1.50704 * 109.46933 * 150.00115 * 14 13 11 18 18 O 1.21281 * 120.00155 * 13.77006 * 17 14 13 19 19 N 1.34776 * 119.99921 * 193.77402 * 17 14 13 20 20 C 1.46500 * 120.00170 * 5.50295 * 19 17 14 21 21 C 1.46501 * 120.00118 * 185.50753 * 19 17 14 22 22 C 1.50704 * 109.47355 * 89.99495 * 21 19 17 23 23 H 1.07997 * 119.99434 * 359.97438 * 22 21 19 24 24 C 1.37866 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31520 * 120.00110 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 120.00317 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47213 * 90.00387 * 26 24 22 28 28 H 1.48501 * 109.47195 * 210.00238 * 26 24 22 29 29 H 1.48503 * 109.46897 * 330.00106 * 26 24 22 30 30 H 1.09000 * 109.46832 * 89.11355 * 1 2 3 31 31 H 1.08994 * 109.47149 * 209.11424 * 1 2 3 32 32 H 1.08997 * 109.47366 * 329.11775 * 1 2 3 33 33 H 1.07998 * 119.99790 * 359.97438 * 3 2 1 34 34 H 1.08007 * 120.00171 * 179.72184 * 4 3 2 35 35 H 1.07996 * 120.00371 * 180.23133 * 5 4 3 36 36 H 1.08002 * 120.00259 * 179.82533 * 6 5 4 37 37 H 1.08996 * 109.47605 * 180.02562 * 10 8 7 38 38 H 1.09003 * 109.47087 * 300.00209 * 10 8 7 39 39 H 1.09005 * 109.47322 * 59.99571 * 10 8 7 40 40 H 1.09003 * 109.46737 * 65.11205 * 16 14 13 41 41 H 1.08998 * 109.47076 * 185.11805 * 16 14 13 42 42 H 1.09000 * 109.47034 * 305.11769 * 16 14 13 43 43 H 1.08998 * 109.47360 * 93.73381 * 20 19 17 44 44 H 1.09001 * 109.46914 * 213.73397 * 20 19 17 45 45 H 1.09006 * 109.47289 * 333.73302 * 20 19 17 46 46 H 1.09001 * 109.47392 * 209.99808 * 21 19 17 47 47 H 1.09005 * 109.47050 * 329.99748 * 21 19 17 48 48 H 0.96998 * 120.00180 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 0.0001 -0.0007 6 6 3.5807 -1.1969 0.0006 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.3752 -2.3042 -0.0714 10 6 1.7358 -3.2579 1.2997 11 6 1.8828 -3.3361 -1.1744 12 8 2.7206 -2.9139 -1.9358 13 8 1.3416 -4.5477 -1.3768 14 6 1.8110 -5.2950 -2.5298 15 1 2.8463 -5.0267 -2.7398 16 6 0.9411 -4.9604 -3.7432 17 6 1.7234 -6.7716 -2.2409 18 8 1.0850 -7.1663 -1.2883 19 7 2.3547 -7.6533 -3.0412 20 6 3.2233 -7.1732 -4.1188 21 6 2.1722 -9.0920 -2.8336 22 6 1.0007 -9.5729 -3.6507 23 1 0.4473 -8.8764 -4.2630 24 6 0.6350 -10.9017 -3.6156 25 7 -0.3870 -11.3215 -4.3291 26 14 1.5919 -12.1063 -2.5560 27 1 0.9880 -12.1613 -1.2005 28 1 1.5442 -13.4557 -3.1742 29 1 3.0043 -11.6596 -2.4510 30 1 -0.3633 0.0159 -1.0276 31 1 -0.3633 -0.8978 0.5000 32 1 -0.3634 0.8819 0.5274 33 1 1.6582 2.1326 -0.0004 34 1 4.1204 2.1327 -0.0098 35 1 5.3517 0.0001 -0.0011 36 1 4.1207 -2.1322 0.0013 37 1 1.1912 -4.2021 1.3004 38 1 2.8052 -3.4557 1.3728 39 1 1.4189 -2.6546 2.1505 40 1 1.0747 -3.9114 -4.0077 41 1 1.2347 -5.5877 -4.5848 42 1 -0.1058 -5.1436 -3.5013 43 1 4.2523 -7.1262 -3.7624 44 1 3.1630 -7.8565 -4.9658 45 1 2.9009 -6.1795 -4.4299 46 1 3.0732 -9.6211 -3.1439 47 1 1.9826 -9.2856 -1.7778 48 1 -0.6441 -12.2565 -4.3047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923904207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:55 Heat of formation + Delta-G solvation = -92.678104 kcal Electronic energy + Delta-G solvation = -28924.339529 eV Core-core repulsion = 24944.718792 eV Total energy + Delta-G solvation = -3979.620736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06263 -39.77351 -38.88252 -36.46232 -35.02433 -34.69664 -32.91051 -32.74465 -31.65055 -29.79994 -28.39505 -27.12979 -26.22326 -25.45883 -24.32037 -23.02292 -22.03074 -21.35050 -20.08426 -18.84071 -17.82084 -17.04944 -16.95690 -16.76607 -16.15517 -15.89335 -15.45062 -15.37782 -14.77598 -14.68600 -14.20516 -13.92950 -13.88372 -13.75705 -13.34799 -13.20562 -12.92133 -12.90579 -12.61777 -12.43462 -12.35205 -12.26655 -12.24301 -12.08925 -11.92710 -11.81724 -11.51314 -11.44881 -11.19335 -10.97066 -10.94591 -10.72448 -10.54642 -10.34844 -10.18531 -9.58585 -9.04768 -8.98885 -8.82997 -8.62527 -7.80845 -6.12491 -4.12095 1.05767 1.20206 2.13136 2.47007 3.13510 3.27332 3.33295 3.35329 3.53865 3.79531 4.22437 4.36532 4.48045 4.65661 4.68098 4.73831 4.81507 4.87428 4.91924 5.00929 5.03452 5.08069 5.21004 5.28044 5.33098 5.40916 5.44657 5.48638 5.54287 5.63461 5.67739 5.71960 5.78411 5.79927 5.90254 5.96646 6.05637 6.21492 6.24782 6.30998 6.38551 6.40957 6.63431 6.78618 6.88422 7.21798 7.55167 7.70030 8.08979 8.41333 8.79161 8.90452 9.47171 11.00614 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002424 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.366530 B =11548.834598 C =11638.882393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.078 4.078 7 C -0.077 4.077 8 C -0.047 4.047 9 H 0.121 0.879 10 C -0.143 4.143 11 C 0.464 3.536 12 O -0.502 6.502 13 O -0.323 6.323 14 C 0.072 3.928 15 H 0.103 0.897 16 C -0.166 4.166 17 C 0.513 3.487 18 O -0.520 6.520 19 N -0.592 5.592 20 C 0.072 3.928 21 C 0.216 3.784 22 C -0.532 4.532 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.896 5.896 26 Si 0.876 3.124 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.266 1.266 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 24.461 7.895 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.096 4.096 7 C -0.077 4.077 8 C -0.065 4.065 9 H 0.139 0.861 10 C -0.200 4.200 11 C 0.306 3.694 12 O -0.390 6.390 13 O -0.238 6.238 14 C 0.013 3.987 15 H 0.120 0.880 16 C -0.223 4.223 17 C 0.298 3.702 18 O -0.395 6.395 19 N -0.325 5.325 20 C -0.072 4.072 21 C 0.096 3.904 22 C -0.570 4.570 23 H 0.093 0.907 24 C -0.129 4.129 25 N -0.534 5.534 26 Si 0.703 3.297 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.935 24.144 8.105 26.395 hybrid contribution 0.563 -0.709 0.088 0.909 sum 7.497 23.435 8.193 25.933 Atomic orbital electron populations 1.20928 0.91218 1.03086 1.02783 1.19709 0.95974 0.92394 0.99309 1.20946 0.94269 0.97181 1.01898 1.21137 0.94312 0.98008 0.99694 1.21093 0.99902 0.92363 1.01233 1.20939 0.93356 0.98290 0.97044 1.19151 0.93677 0.92442 1.02470 1.20029 1.02480 0.91279 0.92750 0.86089 1.21817 1.03041 1.00953 0.94227 1.23601 0.79054 0.80683 0.86023 1.90655 1.31075 1.71088 1.46136 1.86627 1.62004 1.28725 1.46479 1.22618 1.00752 0.90358 0.84964 0.87959 1.22186 1.01279 1.02699 0.96156 1.19787 0.80524 0.86351 0.83581 1.90689 1.40606 1.79593 1.28632 1.47733 1.45628 1.08045 1.31137 1.21890 0.93433 1.00334 0.91547 1.19728 0.97487 0.74899 0.98302 1.21306 1.13406 0.94903 1.27432 0.90654 1.24848 0.94832 0.98086 0.95173 1.69893 1.26648 1.16221 1.40627 0.86848 0.80926 0.80701 0.81213 1.19832 1.21016 1.19040 0.90840 0.90944 0.91174 0.86029 0.86151 0.86077 0.86222 0.90036 0.91901 0.90829 0.91254 0.89345 0.90496 0.93198 0.90103 0.91650 0.94866 0.94274 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.37 36.01 0.34 -0.55 16 2 C -0.07 -0.70 5.88 -104.63 -0.62 -1.31 16 3 C -0.12 -1.08 9.71 -39.58 -0.38 -1.47 16 4 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 6 C -0.08 -0.86 7.87 -39.58 -0.31 -1.17 16 7 C -0.08 -0.83 4.45 -104.62 -0.47 -1.30 16 8 C -0.05 -0.50 2.76 -92.93 -0.26 -0.76 16 9 H 0.12 1.12 5.53 -51.93 -0.29 0.83 16 10 C -0.14 -1.39 8.98 37.16 0.33 -1.06 16 11 C 0.46 6.54 7.04 36.00 0.25 6.79 16 12 O -0.50 -7.79 14.01 -18.75 -0.26 -8.05 16 13 O -0.32 -5.29 9.36 -45.82 -0.43 -5.71 16 14 C 0.07 1.18 2.12 -27.88 -0.06 1.13 16 15 H 0.10 1.54 6.29 -51.93 -0.33 1.22 16 16 C -0.17 -2.42 9.15 37.16 0.34 -2.08 16 17 C 0.51 10.74 6.97 -10.98 -0.08 10.66 16 18 O -0.52 -13.01 16.11 -13.69 -0.22 -13.23 16 19 N -0.59 -12.20 2.86 -182.95 -0.52 -12.72 16 20 C 0.07 1.10 9.87 59.85 0.59 1.69 16 21 C 0.22 5.24 4.29 -5.19 -0.02 5.22 16 22 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 23 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 24 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 25 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 26 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.48 6.11 -51.93 -0.32 0.16 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.34 7.47 -52.49 -0.39 0.95 16 37 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.06 0.61 7.64 -51.93 -0.40 0.22 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.24 6.26 -51.93 -0.33 0.91 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 45 H 0.06 0.85 4.58 -51.93 -0.24 0.61 16 46 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 47 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -35.19 391.82 -8.24 -43.43 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.24 Total: 0.82 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.57 Total: -0.60 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.25 Total: -39.25 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.91 Total: -27.00 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.19 -8.24 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923904207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.248 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds