Wall clock time and date at job start Tue Mar 31 2020 17:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 119.99881 * 2 1 4 4 C 1.38210 * 119.99707 * 180.25235 * 3 2 1 5 5 C 1.38257 * 120.00467 * 359.53023 * 4 3 2 6 6 C 1.38210 * 119.99606 * 0.40423 * 5 4 3 7 7 C 1.38207 * 119.99993 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.00063 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.46948 * 4.09339 * 8 7 2 10 10 C 1.52999 * 109.47069 * 244.09619 * 8 7 2 11 11 C 1.50695 * 109.46823 * 124.09983 * 8 7 2 12 12 O 1.20826 * 120.00670 * 359.97438 * 11 8 7 13 13 O 1.34240 * 119.99862 * 180.02562 * 11 8 7 14 14 C 1.45194 * 116.99935 * 179.97438 * 13 11 8 15 15 H 1.09002 * 109.47505 * 30.00332 * 14 13 11 16 16 C 1.53002 * 109.47387 * 269.99836 * 14 13 11 17 17 C 1.50704 * 109.46933 * 150.00115 * 14 13 11 18 18 O 1.21281 * 120.00155 * 13.77006 * 17 14 13 19 19 N 1.34776 * 119.99921 * 193.77402 * 17 14 13 20 20 C 1.46500 * 120.00170 * 5.50295 * 19 17 14 21 21 C 1.46501 * 120.00118 * 185.50753 * 19 17 14 22 22 C 1.50704 * 109.47355 * 89.99495 * 21 19 17 23 23 H 1.07997 * 119.99434 * 359.97438 * 22 21 19 24 24 C 1.37866 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31520 * 120.00110 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 120.00317 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47213 * 90.00387 * 26 24 22 28 28 H 1.48501 * 109.47195 * 210.00238 * 26 24 22 29 29 H 1.48503 * 109.46897 * 330.00106 * 26 24 22 30 30 H 1.09000 * 109.46832 * 89.11355 * 1 2 3 31 31 H 1.08994 * 109.47149 * 209.11424 * 1 2 3 32 32 H 1.08997 * 109.47366 * 329.11775 * 1 2 3 33 33 H 1.07998 * 119.99790 * 359.97438 * 3 2 1 34 34 H 1.08007 * 120.00171 * 179.72184 * 4 3 2 35 35 H 1.07996 * 120.00371 * 180.23133 * 5 4 3 36 36 H 1.08002 * 120.00259 * 179.82533 * 6 5 4 37 37 H 1.08996 * 109.47605 * 180.02562 * 10 8 7 38 38 H 1.09003 * 109.47087 * 300.00209 * 10 8 7 39 39 H 1.09005 * 109.47322 * 59.99571 * 10 8 7 40 40 H 1.09003 * 109.46737 * 65.11205 * 16 14 13 41 41 H 1.08998 * 109.47076 * 185.11805 * 16 14 13 42 42 H 1.09000 * 109.47034 * 305.11769 * 16 14 13 43 43 H 1.08998 * 109.47360 * 93.73381 * 20 19 17 44 44 H 1.09001 * 109.46914 * 213.73397 * 20 19 17 45 45 H 1.09006 * 109.47289 * 333.73302 * 20 19 17 46 46 H 1.09001 * 109.47392 * 209.99808 * 21 19 17 47 47 H 1.09005 * 109.47050 * 329.99748 * 21 19 17 48 48 H 0.96998 * 120.00180 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 0.0001 -0.0007 6 6 3.5807 -1.1969 0.0006 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.3752 -2.3042 -0.0714 10 6 1.7358 -3.2579 1.2997 11 6 1.8828 -3.3361 -1.1744 12 8 2.7206 -2.9139 -1.9358 13 8 1.3416 -4.5477 -1.3768 14 6 1.8110 -5.2950 -2.5298 15 1 2.8463 -5.0267 -2.7398 16 6 0.9411 -4.9604 -3.7432 17 6 1.7234 -6.7716 -2.2409 18 8 1.0850 -7.1663 -1.2883 19 7 2.3547 -7.6533 -3.0412 20 6 3.2233 -7.1732 -4.1188 21 6 2.1722 -9.0920 -2.8336 22 6 1.0007 -9.5729 -3.6507 23 1 0.4473 -8.8764 -4.2630 24 6 0.6350 -10.9017 -3.6156 25 7 -0.3870 -11.3215 -4.3291 26 14 1.5919 -12.1063 -2.5560 27 1 0.9880 -12.1613 -1.2005 28 1 1.5442 -13.4557 -3.1742 29 1 3.0043 -11.6596 -2.4510 30 1 -0.3633 0.0159 -1.0276 31 1 -0.3633 -0.8978 0.5000 32 1 -0.3634 0.8819 0.5274 33 1 1.6582 2.1326 -0.0004 34 1 4.1204 2.1327 -0.0098 35 1 5.3517 0.0001 -0.0011 36 1 4.1207 -2.1322 0.0013 37 1 1.1912 -4.2021 1.3004 38 1 2.8052 -3.4557 1.3728 39 1 1.4189 -2.6546 2.1505 40 1 1.0747 -3.9114 -4.0077 41 1 1.2347 -5.5877 -4.5848 42 1 -0.1058 -5.1436 -3.5013 43 1 4.2523 -7.1262 -3.7624 44 1 3.1630 -7.8565 -4.9658 45 1 2.9009 -6.1795 -4.4299 46 1 3.0732 -9.6211 -3.1439 47 1 1.9826 -9.2856 -1.7778 48 1 -0.6441 -12.2565 -4.3047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923904207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:54 Heat of formation + Delta-G solvation = -112.342774 kcal Electronic energy + Delta-G solvation = -28925.192253 eV Core-core repulsion = 24944.718792 eV Total energy + Delta-G solvation = -3980.473460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18593 -40.93764 -40.09799 -37.69157 -36.75116 -35.52995 -34.81420 -33.56016 -33.08749 -30.57886 -30.22576 -27.73880 -27.66272 -26.50645 -25.66957 -24.35133 -23.22632 -22.27355 -21.02782 -20.39801 -19.16610 -18.93600 -18.28299 -17.71244 -17.42209 -17.14801 -16.75256 -16.41452 -16.18124 -16.02193 -15.52789 -14.98134 -14.82942 -14.70724 -14.54211 -14.35694 -14.16606 -14.00085 -13.77876 -13.75818 -13.57140 -13.48618 -13.27740 -13.21279 -13.03809 -12.88639 -12.77447 -12.65199 -12.57529 -12.46735 -12.04925 -11.96926 -11.90487 -11.75278 -11.65595 -11.40055 -10.83886 -10.70591 -9.70664 -9.52789 -9.51345 -8.34608 -6.40272 0.33280 0.50324 1.02011 1.28919 1.34799 1.37391 1.45485 1.51186 2.29898 2.31260 2.85785 2.99526 3.34008 3.38660 3.57718 3.71648 3.77500 3.92409 3.99555 4.08918 4.11314 4.22389 4.25080 4.46034 4.46678 4.52976 4.58917 4.59703 4.73045 4.74448 4.77654 4.82103 4.83482 4.89224 4.89848 4.96111 5.02654 5.11276 5.16251 5.26888 5.33805 5.41997 5.49810 5.57391 5.62637 5.69231 6.11904 6.20354 6.44775 6.59789 6.61169 7.11643 7.26614 8.81856 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002424 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.366530 B =11548.834598 C =11638.882393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.139 4.139 6 C -0.098 4.098 7 C -0.093 4.093 8 C -0.042 4.042 9 H 0.138 0.862 10 C -0.139 4.139 11 C 0.464 3.536 12 O -0.516 6.516 13 O -0.340 6.340 14 C 0.080 3.920 15 H 0.122 0.878 16 C -0.160 4.160 17 C 0.504 3.496 18 O -0.572 6.572 19 N -0.598 5.598 20 C 0.064 3.936 21 C 0.222 3.778 22 C -0.538 4.538 23 H 0.034 0.966 24 C 0.013 3.987 25 N -0.942 5.942 26 Si 0.945 3.055 27 H -0.277 1.277 28 H -0.275 1.275 29 H -0.238 1.238 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.022 0.978 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.768 26.398 8.452 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.157 4.157 6 C -0.116 4.116 7 C -0.093 4.093 8 C -0.060 4.060 9 H 0.155 0.845 10 C -0.196 4.196 11 C 0.307 3.693 12 O -0.404 6.404 13 O -0.255 6.255 14 C 0.022 3.978 15 H 0.140 0.860 16 C -0.217 4.217 17 C 0.291 3.709 18 O -0.452 6.452 19 N -0.330 5.330 20 C -0.077 4.077 21 C 0.101 3.899 22 C -0.576 4.576 23 H 0.052 0.948 24 C -0.185 4.185 25 N -0.582 5.582 26 Si 0.768 3.232 27 H -0.202 1.202 28 H -0.200 1.200 29 H -0.161 1.161 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.612 26.119 8.627 28.824 hybrid contribution 0.028 -1.188 -0.127 1.195 sum 8.639 24.931 8.500 27.721 Atomic orbital electron populations 1.20986 0.89763 1.04184 1.03166 1.20008 0.97195 0.92190 0.98751 1.21306 0.94553 0.97884 1.00989 1.21481 0.94648 0.98612 0.98551 1.21335 1.00802 0.92336 1.01207 1.21001 0.93775 0.98499 0.98358 1.19206 0.93677 0.92686 1.03746 1.20140 1.03409 0.90974 0.91508 0.84500 1.21799 1.02600 1.00589 0.94647 1.24272 0.78523 0.79915 0.86554 1.90634 1.31721 1.71197 1.46896 1.86648 1.62564 1.29815 1.46516 1.22494 1.02262 0.87374 0.85675 0.86032 1.22172 0.99971 1.04219 0.95359 1.20590 0.79330 0.88298 0.82692 1.90650 1.42783 1.80835 1.30884 1.47816 1.46076 1.06774 1.32295 1.22209 0.94145 1.01346 0.90046 1.19440 0.96584 0.77548 0.96357 1.21514 1.14406 0.94512 1.27198 0.94803 1.25812 0.95895 1.00276 0.96537 1.70038 1.28649 1.16971 1.42564 0.85750 0.80703 0.78160 0.78566 1.20238 1.19996 1.16070 0.90739 0.90575 0.89398 0.83673 0.83728 0.84750 0.87408 0.91413 0.92356 0.88610 0.88922 0.88788 0.91979 0.90075 0.90355 0.89218 0.92535 0.96039 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.37 71.24 0.67 -0.84 16 2 C -0.08 -1.38 5.88 -19.87 -0.12 -1.50 16 3 C -0.13 -1.91 9.71 22.27 0.22 -1.70 16 4 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 5 C -0.14 -2.47 10.05 22.27 0.22 -2.25 16 6 C -0.10 -2.11 7.87 22.27 0.18 -1.93 16 7 C -0.09 -1.90 4.45 -19.86 -0.09 -1.99 16 8 C -0.04 -0.87 2.76 -12.29 -0.03 -0.91 16 9 H 0.14 2.38 5.53 -2.39 -0.01 2.36 16 10 C -0.14 -2.66 8.98 71.98 0.65 -2.02 16 11 C 0.46 12.85 7.04 71.23 0.50 13.35 16 12 O -0.52 -15.58 14.01 21.96 0.31 -15.27 16 13 O -0.34 -11.12 9.36 -45.27 -0.42 -11.54 16 14 C 0.08 2.61 2.12 29.85 0.06 2.67 16 15 H 0.12 3.47 6.29 -2.39 -0.01 3.46 16 16 C -0.16 -4.55 9.15 71.98 0.66 -3.89 16 17 C 0.50 21.33 6.97 87.66 0.61 21.94 16 18 O -0.57 -29.62 16.11 15.37 0.25 -29.37 16 19 N -0.60 -24.41 2.86 -851.10 -2.43 -26.84 16 20 C 0.06 1.84 9.87 127.77 1.26 3.10 16 21 C 0.22 10.76 4.29 85.63 0.37 11.13 16 22 C -0.54 -31.19 9.94 25.60 0.25 -30.93 16 23 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 24 C 0.01 0.77 5.47 84.65 0.46 1.23 16 25 N -0.94 -58.94 13.96 21.44 0.30 -58.64 16 26 Si 0.95 43.98 27.47 68.60 1.88 45.87 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.85 6.11 -2.39 -0.01 0.83 16 32 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.11 2.46 7.47 -2.91 -0.02 2.44 16 37 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 38 H 0.06 1.15 7.64 -2.39 -0.02 1.13 16 39 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.09 2.54 6.26 -2.39 -0.01 2.52 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 45 H 0.09 2.12 4.58 -2.38 -0.01 2.11 16 46 H 0.06 2.48 7.13 -2.39 -0.02 2.46 16 47 H 0.02 1.12 6.78 -2.38 -0.02 1.10 16 48 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -79.10 391.82 6.88 -72.22 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.90 Total: 19.59 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.09 Total: 3.99 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.13 Total: -85.48 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: 0.13 Total: -56.19 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal Total: -79.10 6.88 -72.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923904207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.119 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds