Wall clock time and date at job start Tue Mar 31 2020 17:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47425 * 270.00081 * 3 2 1 5 5 H 1.48504 * 109.47176 * 30.00327 * 3 2 1 6 6 H 1.48504 * 109.47487 * 149.99990 * 3 2 1 7 7 C 1.38819 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00144 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00380 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.84659 * 336.19285 * 10 9 7 12 12 C 1.54047 * 113.62069 * 107.50017 * 10 9 7 13 13 C 1.53780 * 86.98426 * 139.98409 * 12 10 9 14 14 H 1.09001 * 113.61378 * 219.98308 * 13 12 10 15 15 N 1.46500 * 113.61803 * 89.16366 * 13 12 10 16 16 C 1.34773 * 119.99865 * 105.58670 * 15 13 12 17 17 O 1.21277 * 120.00348 * 0.27590 * 16 15 13 18 18 C 1.50709 * 119.99646 * 180.27792 * 16 15 13 19 19 H 1.09000 * 109.50309 * 299.91122 * 18 16 15 20 20 C 1.53092 * 109.50449 * 60.00196 * 18 16 15 21 21 O 1.43022 * 109.25615 * 176.78498 * 20 18 16 22 22 C 1.43013 * 113.73470 * 301.32638 * 21 20 18 23 23 C 1.53100 * 109.26129 * 58.67073 * 22 21 20 24 24 N 1.47013 * 109.25700 * 303.15136 * 23 22 21 25 25 C 1.46898 * 111.00120 * 182.38781 * 24 23 22 26 26 C 1.53005 * 109.47110 * 40.71865 * 25 24 23 27 27 F 1.39903 * 109.46644 * 293.32417 * 26 25 24 28 28 F 1.39899 * 109.47176 * 53.31908 * 26 25 24 29 29 C 1.53781 * 113.61686 * 205.00013 * 10 9 7 30 30 H 0.97000 * 119.99611 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99919 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.61157 * 25.47611 * 12 10 9 33 33 H 1.09001 * 113.69761 * 254.49541 * 12 10 9 34 34 H 0.96995 * 119.99426 * 285.86222 * 15 13 12 35 35 H 1.09001 * 109.50588 * 296.71207 * 20 18 16 36 36 H 1.08990 * 109.51096 * 56.80668 * 20 18 16 37 37 H 1.09001 * 109.50652 * 178.60402 * 22 21 20 38 38 H 1.08997 * 109.50952 * 298.73710 * 22 21 20 39 39 H 1.09004 * 109.50477 * 63.08405 * 23 22 21 40 40 H 1.09001 * 109.51180 * 183.16809 * 23 22 21 41 41 H 1.08999 * 109.47470 * 160.71547 * 25 24 23 42 42 H 1.08994 * 109.47616 * 280.72093 * 25 24 23 43 43 H 1.08997 * 109.47370 * 173.32262 * 26 25 24 44 44 H 1.09000 * 113.61385 * 105.46536 * 29 10 9 45 45 H 1.09003 * 113.68728 * 334.57353 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 1 3.0659 -3.5638 -0.4063 12 6 1.9979 -4.4042 1.3441 13 6 1.8475 -5.6978 0.5263 14 1 1.1330 -6.4026 0.9516 15 7 3.1254 -6.3239 0.1779 16 6 3.5267 -7.4389 0.8199 17 8 2.8277 -7.9268 1.6825 18 6 4.8441 -8.0794 0.4658 19 1 4.8366 -8.3704 -0.5846 20 6 5.9796 -7.0825 0.7121 21 8 7.2323 -7.7193 0.4461 22 6 7.4686 -8.8813 1.2458 23 6 6.3481 -9.8964 1.0050 24 7 5.0528 -9.2688 1.3043 25 6 3.9525 -10.2282 1.1400 26 6 4.3739 -11.5883 1.7000 27 9 5.4028 -12.1177 0.9137 28 9 4.8254 -11.4317 3.0149 29 6 1.2605 -4.8286 -0.5982 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 1.1189 -4.1598 1.9404 33 1 2.9252 -4.3539 1.9149 34 1 3.6844 -5.9336 -0.5120 35 1 5.8602 -6.2242 0.0509 36 1 5.9530 -6.7494 1.7495 37 1 8.4259 -9.3239 0.9707 38 1 7.4856 -8.6010 2.2989 39 1 6.3652 -10.2171 -0.0366 40 1 6.4935 -10.7599 1.6541 41 1 3.0747 -9.8700 1.6780 42 1 3.7136 -10.3294 0.0814 43 1 3.5209 -12.2667 1.6871 44 1 1.5927 -5.1205 -1.5944 45 1 0.1799 -4.7012 -0.5328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020434515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:59 Heat of formation + Delta-G solvation = -121.519826 kcal Electronic energy + Delta-G solvation = -29707.261028 eV Core-core repulsion = 25204.452842 eV Total energy + Delta-G solvation = -4502.808186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.46098 -47.27325 -40.82543 -39.30163 -37.92706 -36.03920 -34.15638 -32.97780 -31.54863 -30.66825 -29.81498 -26.66072 -25.40198 -25.18359 -24.40948 -22.78926 -22.46774 -21.61948 -20.36907 -19.05687 -18.39364 -17.74106 -17.38295 -17.16495 -16.97157 -16.41384 -16.14896 -15.79992 -15.40191 -15.20148 -14.88332 -14.83808 -14.49788 -14.15824 -14.03617 -13.91444 -13.69925 -13.61164 -13.20197 -12.73260 -12.66296 -12.48506 -12.31097 -12.08001 -11.91595 -11.87106 -11.68367 -11.40296 -10.93188 -10.82435 -10.77803 -10.38602 -10.26087 -10.16785 -9.96516 -9.68101 -9.61075 -8.99832 -8.90049 -8.74849 -7.02524 -5.83599 -3.12874 2.41860 2.79495 3.21890 3.39712 3.43482 3.45374 3.46910 3.55587 3.85029 4.21405 4.37253 4.43679 4.53721 4.54709 4.61965 4.66281 4.87813 4.90421 4.97287 5.08927 5.14546 5.24227 5.35136 5.38006 5.44001 5.46747 5.46896 5.59423 5.81083 5.85670 6.04973 6.18776 6.25452 6.27119 6.42558 6.44272 6.56568 6.62844 6.72702 7.01135 7.43793 7.63996 8.11543 8.34702 9.46104 10.02857 10.36963 11.38658 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.002377 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.970485 B =11777.572419 C =12572.786990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.095 0.905 15 N -0.703 5.703 16 C 0.522 3.478 17 O -0.524 6.524 18 C 0.031 3.969 19 H 0.079 0.921 20 C 0.075 3.925 21 O -0.378 6.378 22 C 0.060 3.940 23 C 0.001 3.999 24 N -0.508 5.508 25 C -0.005 4.005 26 C 0.261 3.739 27 F -0.208 7.208 28 F -0.193 7.193 29 C -0.159 4.159 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.401 0.599 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.061 0.939 43 H 0.118 0.882 44 H 0.064 0.936 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.920 -24.602 -0.166 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.092 0.908 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.113 0.887 15 N -0.354 5.354 16 C 0.307 3.693 17 O -0.400 6.400 18 C -0.081 4.081 19 H 0.096 0.904 20 C -0.003 4.003 21 O -0.296 6.296 22 C -0.017 4.017 23 C -0.126 4.126 24 N -0.234 5.234 25 C -0.133 4.133 26 C 0.207 3.793 27 F -0.190 7.190 28 F -0.174 7.174 29 C -0.199 4.199 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.156 0.844 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.690 -24.550 0.814 26.789 hybrid contribution 0.244 0.694 -0.956 1.206 sum 10.933 -23.856 -0.142 26.243 Atomic orbital electron populations 1.69660 1.05162 1.25840 1.57278 1.24777 0.95531 0.97845 1.02658 0.86187 0.78712 0.83729 0.77534 1.21657 1.21722 1.20683 1.19287 0.91062 0.84195 1.43191 0.91083 1.42398 1.05779 0.99852 1.86921 1.21669 0.95052 0.85196 0.92631 0.90827 1.24353 1.02090 0.95103 1.00250 1.21844 0.84582 0.94142 0.98320 0.88658 1.45725 1.22413 1.27058 1.40202 1.20076 0.86771 0.80769 0.81711 1.90612 1.55640 1.62566 1.31133 1.22397 0.95107 0.93578 0.97058 0.90375 1.22610 0.81401 0.93407 1.02863 1.88029 1.36366 1.42317 1.62848 1.22776 0.97689 0.85299 0.95925 1.23430 0.89110 0.98712 1.01372 1.62075 1.01713 1.05702 1.53927 1.23699 0.97835 0.89881 1.01909 1.22062 0.86854 0.96227 0.74202 1.92947 1.62963 1.88245 1.74819 1.93012 1.90742 1.96703 1.36972 1.23862 1.01682 0.97268 0.97079 0.93393 0.78006 0.89542 0.92335 0.76485 0.87472 0.91160 0.88034 0.91849 0.93199 0.87697 0.84357 0.92061 0.86514 0.91757 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.09 5.40 -52.50 -0.28 -17.37 16 10 C 0.17 3.04 4.37 -66.98 -0.29 2.74 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.18 -2.93 7.70 -25.78 -0.20 -3.13 16 13 C 0.12 1.61 4.29 -67.12 -0.29 1.32 16 14 H 0.10 1.38 7.50 -51.93 -0.39 0.99 16 15 N -0.70 -8.00 5.17 -53.01 -0.27 -8.27 16 16 C 0.52 6.29 6.89 -10.98 -0.08 6.21 16 17 O -0.52 -7.91 13.38 5.56 0.07 -7.84 16 18 C 0.03 0.31 2.32 -68.75 -0.16 0.15 16 19 H 0.08 0.69 8.13 -51.93 -0.42 0.26 16 20 C 0.07 0.73 6.16 37.21 0.23 0.96 16 21 O -0.38 -3.94 10.83 -35.23 -0.38 -4.32 16 22 C 0.06 0.53 7.01 37.21 0.26 0.79 16 23 C 0.00 0.01 4.16 -3.71 -0.02 0.00 16 24 N -0.51 -5.28 4.38 -227.72 -1.00 -6.28 16 25 C -0.01 -0.05 4.98 -3.82 -0.02 -0.07 16 26 C 0.26 2.01 5.13 37.16 0.19 2.20 16 27 F -0.21 -1.76 13.95 2.25 0.03 -1.72 16 28 F -0.19 -1.99 16.23 2.25 0.04 -1.95 16 29 C -0.16 -2.34 7.57 -25.92 -0.20 -2.53 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 9.87 7.93 -40.82 -0.32 9.55 16 32 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.72 8.19 -40.82 -0.33 3.38 16 35 H 0.11 0.86 7.67 -51.93 -0.40 0.46 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.45 7.83 -51.93 -0.41 0.04 16 40 H 0.11 0.96 4.96 -51.93 -0.26 0.71 16 41 H 0.14 1.51 5.75 -51.93 -0.30 1.21 16 42 H 0.06 0.49 7.99 -51.93 -0.42 0.07 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.41 8.12 -51.93 -0.42 0.99 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.33 364.61 -8.00 -40.33 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.59 Total: 10.47 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.81 Total: 1.42 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.83 Total: -58.80 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.31 Total: -12.16 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.33 -8.00 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020434515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.194 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds