Wall clock time and date at job start Tue Mar 31 2020 17:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47425 * 270.00081 * 3 2 1 5 5 H 1.48504 * 109.47176 * 30.00327 * 3 2 1 6 6 H 1.48504 * 109.47487 * 149.99990 * 3 2 1 7 7 C 1.38819 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00144 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00380 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.84659 * 336.19285 * 10 9 7 12 12 C 1.54047 * 113.62069 * 107.50017 * 10 9 7 13 13 C 1.53780 * 86.98426 * 139.98409 * 12 10 9 14 14 H 1.09001 * 113.61378 * 219.98308 * 13 12 10 15 15 N 1.46500 * 113.61803 * 89.16366 * 13 12 10 16 16 C 1.34773 * 119.99865 * 105.58670 * 15 13 12 17 17 O 1.21277 * 120.00348 * 0.27590 * 16 15 13 18 18 C 1.50709 * 119.99646 * 180.27792 * 16 15 13 19 19 H 1.09000 * 109.50309 * 299.91122 * 18 16 15 20 20 C 1.53092 * 109.50449 * 60.00196 * 18 16 15 21 21 O 1.43022 * 109.25615 * 176.78498 * 20 18 16 22 22 C 1.43013 * 113.73470 * 301.32638 * 21 20 18 23 23 C 1.53100 * 109.26129 * 58.67073 * 22 21 20 24 24 N 1.47013 * 109.25700 * 303.15136 * 23 22 21 25 25 C 1.46898 * 111.00120 * 182.38781 * 24 23 22 26 26 C 1.53005 * 109.47110 * 40.71865 * 25 24 23 27 27 F 1.39903 * 109.46644 * 293.32417 * 26 25 24 28 28 F 1.39899 * 109.47176 * 53.31908 * 26 25 24 29 29 C 1.53781 * 113.61686 * 205.00013 * 10 9 7 30 30 H 0.97000 * 119.99611 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99919 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.61157 * 25.47611 * 12 10 9 33 33 H 1.09001 * 113.69761 * 254.49541 * 12 10 9 34 34 H 0.96995 * 119.99426 * 285.86222 * 15 13 12 35 35 H 1.09001 * 109.50588 * 296.71207 * 20 18 16 36 36 H 1.08990 * 109.51096 * 56.80668 * 20 18 16 37 37 H 1.09001 * 109.50652 * 178.60402 * 22 21 20 38 38 H 1.08997 * 109.50952 * 298.73710 * 22 21 20 39 39 H 1.09004 * 109.50477 * 63.08405 * 23 22 21 40 40 H 1.09001 * 109.51180 * 183.16809 * 23 22 21 41 41 H 1.08999 * 109.47470 * 160.71547 * 25 24 23 42 42 H 1.08994 * 109.47616 * 280.72093 * 25 24 23 43 43 H 1.08997 * 109.47370 * 173.32262 * 26 25 24 44 44 H 1.09000 * 113.61385 * 105.46536 * 29 10 9 45 45 H 1.09003 * 113.68728 * 334.57353 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 1 3.0659 -3.5638 -0.4063 12 6 1.9979 -4.4042 1.3441 13 6 1.8475 -5.6978 0.5263 14 1 1.1330 -6.4026 0.9516 15 7 3.1254 -6.3239 0.1779 16 6 3.5267 -7.4389 0.8199 17 8 2.8277 -7.9268 1.6825 18 6 4.8441 -8.0794 0.4658 19 1 4.8366 -8.3704 -0.5846 20 6 5.9796 -7.0825 0.7121 21 8 7.2323 -7.7193 0.4461 22 6 7.4686 -8.8813 1.2458 23 6 6.3481 -9.8964 1.0050 24 7 5.0528 -9.2688 1.3043 25 6 3.9525 -10.2282 1.1400 26 6 4.3739 -11.5883 1.7000 27 9 5.4028 -12.1177 0.9137 28 9 4.8254 -11.4317 3.0149 29 6 1.2605 -4.8286 -0.5982 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 1.1189 -4.1598 1.9404 33 1 2.9252 -4.3539 1.9149 34 1 3.6844 -5.9336 -0.5120 35 1 5.8602 -6.2242 0.0509 36 1 5.9530 -6.7494 1.7495 37 1 8.4259 -9.3239 0.9707 38 1 7.4856 -8.6010 2.2989 39 1 6.3652 -10.2171 -0.0366 40 1 6.4935 -10.7599 1.6541 41 1 3.0747 -9.8700 1.6780 42 1 3.7136 -10.3294 0.0814 43 1 3.5209 -12.2667 1.6871 44 1 1.5927 -5.1205 -1.5944 45 1 0.1799 -4.7012 -0.5328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020434515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:58 Heat of formation + Delta-G solvation = -146.191862 kcal Electronic energy + Delta-G solvation = -29708.330888 eV Core-core repulsion = 25204.452842 eV Total energy + Delta-G solvation = -4503.878046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.10715 -47.94394 -41.74666 -40.34108 -39.05725 -36.83463 -35.74506 -34.34367 -32.59106 -31.61381 -31.25494 -27.41764 -26.62159 -26.44660 -25.83214 -23.91508 -23.45735 -22.60178 -21.22558 -20.38333 -19.28496 -18.97590 -18.41361 -18.15559 -17.78399 -17.27501 -16.97340 -16.82798 -16.55595 -16.18863 -15.94614 -15.80322 -15.72012 -15.31170 -15.26873 -14.90097 -14.74534 -14.38565 -14.28639 -13.93744 -13.67240 -13.43155 -13.31206 -13.21271 -13.14846 -12.99458 -12.79888 -12.60334 -12.55373 -12.17322 -12.10578 -11.82768 -11.71877 -11.47974 -11.19524 -11.00695 -10.82873 -10.56417 -10.06090 -9.51771 -8.97412 -7.94170 -5.22207 1.45919 1.48998 1.49918 1.58159 1.88666 2.46582 2.57441 2.81963 2.83661 3.28697 3.37631 3.53783 3.62028 3.67613 3.72216 3.84608 3.88910 3.90130 3.97147 3.98611 4.19935 4.22823 4.34207 4.34824 4.44155 4.54278 4.61605 4.70275 4.77290 4.79898 4.89148 4.93407 4.94170 5.16094 5.21602 5.26971 5.52139 5.54740 5.71711 5.74193 5.99583 6.28268 6.50515 7.17294 7.34590 8.11850 8.33299 9.29164 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.002377 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.970485 B =11777.572419 C =12572.786990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.728 5.728 10 C 0.152 3.848 11 H 0.085 0.915 12 C -0.174 4.174 13 C 0.139 3.861 14 H 0.093 0.907 15 N -0.694 5.694 16 C 0.525 3.475 17 O -0.555 6.555 18 C 0.039 3.961 19 H 0.097 0.903 20 C 0.075 3.925 21 O -0.387 6.387 22 C 0.057 3.943 23 C 0.008 3.992 24 N -0.529 5.529 25 C -0.005 4.005 26 C 0.260 3.740 27 F -0.211 7.211 28 F -0.210 7.210 29 C -0.142 4.142 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.414 0.586 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 -25.966 -1.230 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.042 3.958 11 H 0.103 0.897 12 C -0.216 4.216 13 C 0.033 3.967 14 H 0.111 0.889 15 N -0.345 5.345 16 C 0.311 3.689 17 O -0.432 6.432 18 C -0.073 4.073 19 H 0.115 0.885 20 C -0.003 4.003 21 O -0.305 6.305 22 C -0.020 4.020 23 C -0.119 4.119 24 N -0.255 5.255 25 C -0.133 4.133 26 C 0.206 3.794 27 F -0.193 7.193 28 F -0.192 7.192 29 C -0.181 4.181 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.251 0.749 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.093 0.907 43 H 0.171 0.829 44 H 0.106 0.894 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.326 -25.963 -0.265 28.741 hybrid contribution -0.199 1.016 -0.587 1.190 sum 12.127 -24.947 -0.852 27.751 Atomic orbital electron populations 1.69812 1.06628 1.26008 1.59664 1.25557 0.96335 1.01122 1.03915 0.85184 0.77726 0.79701 0.77429 1.21312 1.22602 1.19439 1.19708 0.91597 0.85334 1.40725 0.90304 1.42605 1.05452 1.01103 1.87316 1.22049 0.95718 0.83959 0.94089 0.89748 1.24198 1.01159 0.96789 0.99425 1.21476 0.85551 0.92897 0.96818 0.88903 1.45588 1.21704 1.26824 1.40432 1.20448 0.87148 0.80402 0.80932 1.90618 1.56721 1.63415 1.32486 1.22334 0.93582 0.93458 0.97915 0.88513 1.22661 0.81264 0.93863 1.02507 1.88020 1.36513 1.42827 1.63129 1.22917 0.98650 0.84932 0.95499 1.23378 0.88533 0.98543 1.01454 1.62046 1.02556 1.06316 1.54621 1.23646 0.96883 0.90266 1.02515 1.22358 0.87603 0.96356 0.73078 1.92937 1.63344 1.88170 1.74823 1.92976 1.91041 1.96815 1.38341 1.23663 1.00951 0.95068 0.98455 0.94095 0.79418 0.91362 0.92647 0.74897 0.85690 0.92641 0.85964 0.92547 0.92789 0.87917 0.86198 0.90701 0.82852 0.89356 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -12.94 9.97 84.03 0.84 -12.10 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -34.90 5.40 -320.01 -1.73 -36.63 16 10 C 0.15 5.34 4.37 45.61 0.20 5.54 16 11 H 0.08 2.79 8.10 -2.38 -0.02 2.77 16 12 C -0.17 -5.69 7.70 31.21 0.24 -5.45 16 13 C 0.14 3.60 4.29 45.52 0.20 3.80 16 14 H 0.09 2.57 7.50 -2.39 -0.02 2.55 16 15 N -0.69 -14.17 5.17 -440.03 -2.27 -16.45 16 16 C 0.52 11.72 6.89 87.66 0.60 12.32 16 17 O -0.55 -16.24 13.38 -3.02 -0.04 -16.28 16 18 C 0.04 0.70 2.32 44.18 0.10 0.80 16 19 H 0.10 1.39 8.13 -2.39 -0.02 1.38 16 20 C 0.07 1.31 6.16 72.01 0.44 1.75 16 21 O -0.39 -7.30 10.83 -148.98 -1.61 -8.92 16 22 C 0.06 0.90 7.01 72.02 0.50 1.41 16 23 C 0.01 0.13 4.16 86.31 0.36 0.49 16 24 N -0.53 -10.20 4.38 -874.37 -3.83 -14.02 16 25 C -0.01 -0.09 4.98 86.31 0.43 0.34 16 26 C 0.26 3.54 5.13 71.98 0.37 3.91 16 27 F -0.21 -3.15 13.95 44.97 0.63 -2.52 16 28 F -0.21 -4.14 16.23 44.97 0.73 -3.41 16 29 C -0.14 -3.90 7.57 31.12 0.24 -3.66 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.37 19.45 7.93 -92.71 -0.73 18.72 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 6.39 8.19 -92.71 -0.76 5.63 16 35 H 0.13 1.67 7.67 -2.39 -0.02 1.66 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 0.85 7.83 -2.38 -0.02 0.83 16 40 H 0.10 1.75 4.96 -2.39 -0.01 1.73 16 41 H 0.12 2.52 5.75 -2.39 -0.01 2.50 16 42 H 0.07 1.02 7.99 -2.39 -0.02 1.00 16 43 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -69.81 364.61 -1.29 -71.10 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.46 Total: 32.83 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.99 Total: 5.27 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -7.55 Total: -125.40 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -1.65 Total: -25.19 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.36 Total: -5.93 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.81 -1.29 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020434515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.093 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds