Wall clock time and date at job start Tue Mar 31 2020 17:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48502 * 109.46993 * 274.94709 * 3 2 1 5 5 H 1.48502 * 109.47273 * 34.94915 * 3 2 1 6 6 H 1.48503 * 109.47020 * 154.94872 * 3 2 1 7 7 C 1.38817 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99586 * 189.64118 * 7 2 1 9 9 N 1.36937 * 119.99551 * 9.36888 * 7 2 1 10 10 C 1.47061 * 136.06288 * 358.40668 * 9 7 2 11 11 C 1.53752 * 87.88877 * 152.96792 * 10 9 7 12 12 C 1.53002 * 114.39663 * 272.67553 * 11 10 9 13 13 N 1.46498 * 109.47248 * 268.58825 * 12 11 10 14 14 C 1.34776 * 119.99911 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99800 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99961 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.50540 * 299.91294 * 16 14 13 18 18 C 1.53101 * 109.50703 * 59.99821 * 16 14 13 19 19 O 1.43017 * 109.25478 * 176.78313 * 18 16 14 20 20 C 1.43014 * 113.74228 * 301.32902 * 19 18 16 21 21 C 1.53101 * 109.25479 * 58.67249 * 20 19 18 22 22 N 1.47009 * 109.25913 * 303.15249 * 21 20 19 23 23 C 1.46899 * 110.99974 * 182.39793 * 22 21 20 24 24 C 1.52998 * 109.47605 * 45.00208 * 23 22 21 25 25 F 1.39896 * 109.47092 * 293.04872 * 24 23 22 26 26 F 1.39907 * 109.46631 * 53.04531 * 24 23 22 27 27 C 1.47073 * 136.05125 * 178.78431 * 9 7 2 28 28 H 0.97001 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.46691 * 267.69733 * 10 9 7 30 30 H 1.09000 * 113.46814 * 38.13389 * 10 9 7 31 31 H 1.09004 * 114.26521 * 139.79213 * 11 10 9 32 32 H 1.08999 * 109.46545 * 28.58737 * 12 11 10 33 33 H 1.08994 * 109.47330 * 148.58396 * 12 11 10 34 34 H 0.97005 * 120.00007 * 359.97438 * 13 12 11 35 35 H 1.08996 * 109.50695 * 296.72014 * 18 16 14 36 36 H 1.08999 * 109.50481 * 56.85119 * 18 16 14 37 37 H 1.08998 * 109.50796 * 178.60677 * 20 19 18 38 38 H 1.09002 * 109.50444 * 298.69635 * 20 19 18 39 39 H 1.08998 * 109.50660 * 63.08921 * 21 20 19 40 40 H 1.09006 * 109.50070 * 183.17174 * 21 20 19 41 41 H 1.08995 * 109.47524 * 165.00788 * 23 22 21 42 42 H 1.09001 * 109.46664 * 285.00258 * 23 22 21 43 43 H 1.08992 * 109.47212 * 173.04485 * 24 23 22 44 44 H 1.09003 * 113.46789 * 321.86238 * 27 9 7 45 45 H 1.09002 * 113.46890 * 92.30092 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3932 2.1068 -1.3949 5 1 1.5039 2.6202 0.8020 6 1 3.5962 1.4122 0.5928 7 6 2.0103 -1.2022 -0.0005 8 1 3.0788 -1.2088 0.1561 9 7 1.3392 -2.3800 -0.1941 10 6 -0.0612 -2.7797 -0.3986 11 6 0.4603 -4.0080 -1.1624 12 6 0.7025 -3.7687 -2.6540 13 7 -0.5085 -4.1067 -3.4058 14 6 -0.5286 -3.9729 -4.7468 15 8 0.4561 -3.5731 -5.3310 16 6 -1.7741 -4.3212 -5.5202 17 1 -2.0218 -5.3703 -5.3581 18 6 -2.9340 -3.4426 -5.0440 19 8 -4.0937 -3.7246 -5.8320 20 6 -3.9053 -3.5056 -7.2327 21 6 -2.7552 -4.3848 -7.7310 22 7 -1.5442 -4.0859 -6.9530 23 6 -0.4002 -4.8693 -7.4383 24 6 -0.3630 -4.8246 -8.9671 25 9 -1.4722 -5.5051 -9.4806 26 9 -0.3933 -3.4931 -9.3956 27 6 1.7011 -3.8028 -0.2824 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5802 -3.0318 0.5262 30 1 -0.6241 -2.0854 -1.0226 31 1 -0.0861 -4.9285 -0.9569 32 1 0.9512 -2.7202 -2.8180 33 1 1.5275 -4.3951 -2.9932 34 1 -1.2960 -4.4269 -2.9385 35 1 -3.1454 -3.6554 -3.9961 36 1 -2.6647 -2.3923 -5.1556 37 1 -4.8191 -3.7639 -7.7677 38 1 -3.6650 -2.4569 -7.4080 39 1 -3.0189 -5.4349 -7.6050 40 1 -2.5711 -4.1798 -8.7856 41 1 0.5232 -4.4490 -7.0400 42 1 -0.5011 -5.9030 -7.1073 43 1 0.5513 -5.2999 -9.3224 44 1 2.6398 -3.9802 -0.8073 45 1 1.6467 -4.3246 0.6731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031876521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:41 Heat of formation + Delta-G solvation = -96.078747 kcal Electronic energy + Delta-G solvation = -30049.423932 eV Core-core repulsion = 25547.718954 eV Total energy + Delta-G solvation = -4501.704978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.32837 -47.15676 -40.60789 -38.92554 -38.09292 -36.01541 -34.35203 -32.32018 -31.71508 -30.57865 -28.61692 -26.71875 -25.92550 -24.76182 -24.57933 -22.66261 -22.48954 -21.34215 -20.21255 -18.94011 -18.07138 -17.62104 -17.11392 -16.88513 -16.72629 -16.35708 -16.05486 -15.69864 -15.34728 -15.03619 -14.78853 -14.75910 -14.56948 -14.03263 -13.97431 -13.82642 -13.66046 -13.49744 -13.08366 -12.71423 -12.60734 -12.32078 -12.23680 -12.15909 -11.74101 -11.55696 -11.32982 -11.17824 -10.99865 -10.76829 -10.64640 -10.54579 -10.06338 -9.91605 -9.85339 -9.51229 -9.30371 -8.84456 -8.76767 -8.62502 -6.92202 -5.79830 -3.09653 2.61337 2.97988 3.36289 3.40542 3.45686 3.47350 3.55792 3.69330 3.96746 4.33168 4.45745 4.51608 4.57998 4.67039 4.76583 4.79153 4.99767 5.03435 5.20237 5.20320 5.25817 5.33165 5.37507 5.49486 5.54517 5.58309 5.60249 5.71938 5.95496 6.06821 6.30672 6.39640 6.47362 6.52933 6.57362 6.59746 6.74003 6.84995 7.13058 7.24155 7.50982 7.61917 7.95589 8.30113 9.02140 9.69373 10.61739 11.38456 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002816 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.881527 B = 9939.047272 C =10008.466720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.161 3.839 11 C -0.163 4.163 12 C 0.152 3.848 13 N -0.718 5.718 14 C 0.518 3.482 15 O -0.523 6.523 16 C 0.032 3.968 17 H 0.077 0.923 18 C 0.075 3.925 19 O -0.379 6.379 20 C 0.060 3.940 21 C 0.001 3.999 22 N -0.508 5.508 23 C -0.008 4.008 24 C 0.263 3.737 25 F -0.209 7.209 26 F -0.192 7.192 27 C 0.127 3.873 28 H 0.253 0.747 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.141 0.859 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.042 0.958 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -14.590 -15.783 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.035 3.965 11 C -0.182 4.182 12 C 0.029 3.971 13 N -0.369 5.369 14 C 0.302 3.698 15 O -0.400 6.400 16 C -0.080 4.080 17 H 0.094 0.906 18 C -0.003 4.003 19 O -0.297 6.297 20 C -0.017 4.017 21 C -0.127 4.127 22 N -0.234 5.234 23 C -0.136 4.136 24 C 0.209 3.791 25 F -0.190 7.190 26 F -0.173 7.173 27 C 0.000 4.000 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.077 0.923 43 H 0.134 0.866 44 H 0.060 0.940 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.767 -13.466 -16.153 21.806 hybrid contribution 0.013 -0.063 0.426 0.431 sum -5.754 -13.528 -15.727 21.528 Atomic orbital electron populations 1.69845 1.05032 1.25392 1.56195 1.24765 0.95628 0.97524 1.02261 0.86133 0.78666 0.83511 0.77650 1.21438 1.21767 1.20593 1.18946 0.91090 0.81741 1.42999 0.90100 1.45738 1.03544 0.99624 1.84552 1.22163 0.88857 0.90166 0.95312 1.23312 1.01296 0.99895 0.93743 1.21045 0.84969 1.02170 0.88897 1.46052 1.17406 1.67124 1.06349 1.20039 0.88852 0.78350 0.82564 1.90608 1.35809 1.45031 1.68503 1.22368 0.95453 1.00741 0.89423 0.90568 1.22624 0.83306 0.98883 0.95485 1.88009 1.34804 1.88855 1.18030 1.22762 0.97864 0.99444 0.81606 1.23424 0.90191 0.98937 1.00153 1.62025 1.04160 1.56140 1.01107 1.23733 0.99510 0.98236 0.92133 1.22033 0.87850 0.76250 0.93009 1.92918 1.56978 1.80053 1.89084 1.93022 1.96962 1.36234 1.91127 1.22337 0.94966 0.87322 0.95360 0.93666 0.95586 0.91294 0.91020 0.89691 0.92142 0.76767 0.87422 0.91040 0.88138 0.91838 0.93453 0.87549 0.84108 0.92283 0.86602 0.93982 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.00 11.64 55.49 0.65 -26.35 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 22.28 29.56 -169.99 -5.03 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.14 10.72 -15.06 -0.16 -6.30 16 8 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 9 N -0.61 -15.12 3.61 -184.60 -0.67 -15.79 16 10 C 0.16 3.54 6.87 -8.38 -0.06 3.48 16 11 C -0.16 -2.72 4.18 -89.97 -0.38 -3.09 16 12 C 0.15 2.51 5.51 -4.04 -0.02 2.49 16 13 N -0.72 -9.59 5.46 -60.30 -0.33 -9.92 16 14 C 0.52 7.32 6.89 -10.99 -0.08 7.25 16 15 O -0.52 -9.20 13.71 5.56 0.08 -9.13 16 16 C 0.03 0.37 2.35 -68.75 -0.16 0.21 16 17 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 18 C 0.07 0.85 6.16 37.21 0.23 1.08 16 19 O -0.38 -4.43 10.83 -35.23 -0.38 -4.81 16 20 C 0.06 0.60 7.01 37.21 0.26 0.87 16 21 C 0.00 0.01 4.27 -3.71 -0.02 -0.01 16 22 N -0.51 -6.08 4.33 -227.73 -0.99 -7.07 16 23 C -0.01 -0.09 4.99 -3.83 -0.02 -0.10 16 24 C 0.26 2.37 5.13 37.16 0.19 2.56 16 25 F -0.21 -1.97 14.02 2.25 0.03 -1.94 16 26 F -0.19 -2.29 16.53 2.25 0.04 -2.25 16 27 C 0.13 2.46 8.25 -8.50 -0.07 2.39 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.69 7.27 -51.93 -0.38 1.32 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.80 7.92 -51.93 -0.41 1.39 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 4.22 7.96 -40.82 -0.32 3.90 16 35 H 0.11 1.03 7.67 -51.93 -0.40 0.63 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.47 8.03 -51.93 -0.42 0.05 16 40 H 0.11 1.10 5.03 -51.93 -0.26 0.84 16 41 H 0.14 1.78 5.54 -51.93 -0.29 1.49 16 42 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 43 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -33.54 363.86 -8.16 -41.70 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.67 Total: 2.24 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -0.37 Total: 10.58 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.34 Total: -59.13 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.31 Total: -13.94 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.54 -8.16 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031876521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.377 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds