Wall clock time and date at job start Tue Mar 31 2020 17:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48502 * 109.46993 * 274.94709 * 3 2 1 5 5 H 1.48502 * 109.47273 * 34.94915 * 3 2 1 6 6 H 1.48503 * 109.47020 * 154.94872 * 3 2 1 7 7 C 1.38817 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99586 * 189.64118 * 7 2 1 9 9 N 1.36937 * 119.99551 * 9.36888 * 7 2 1 10 10 C 1.47061 * 136.06288 * 358.40668 * 9 7 2 11 11 C 1.53752 * 87.88877 * 152.96792 * 10 9 7 12 12 C 1.53002 * 114.39663 * 272.67553 * 11 10 9 13 13 N 1.46498 * 109.47248 * 268.58825 * 12 11 10 14 14 C 1.34776 * 119.99911 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99800 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99961 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.50540 * 299.91294 * 16 14 13 18 18 C 1.53101 * 109.50703 * 59.99821 * 16 14 13 19 19 O 1.43017 * 109.25478 * 176.78313 * 18 16 14 20 20 C 1.43014 * 113.74228 * 301.32902 * 19 18 16 21 21 C 1.53101 * 109.25479 * 58.67249 * 20 19 18 22 22 N 1.47009 * 109.25913 * 303.15249 * 21 20 19 23 23 C 1.46899 * 110.99974 * 182.39793 * 22 21 20 24 24 C 1.52998 * 109.47605 * 45.00208 * 23 22 21 25 25 F 1.39896 * 109.47092 * 293.04872 * 24 23 22 26 26 F 1.39907 * 109.46631 * 53.04531 * 24 23 22 27 27 C 1.47073 * 136.05125 * 178.78431 * 9 7 2 28 28 H 0.97001 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.46691 * 267.69733 * 10 9 7 30 30 H 1.09000 * 113.46814 * 38.13389 * 10 9 7 31 31 H 1.09004 * 114.26521 * 139.79213 * 11 10 9 32 32 H 1.08999 * 109.46545 * 28.58737 * 12 11 10 33 33 H 1.08994 * 109.47330 * 148.58396 * 12 11 10 34 34 H 0.97005 * 120.00007 * 359.97438 * 13 12 11 35 35 H 1.08996 * 109.50695 * 296.72014 * 18 16 14 36 36 H 1.08999 * 109.50481 * 56.85119 * 18 16 14 37 37 H 1.08998 * 109.50796 * 178.60677 * 20 19 18 38 38 H 1.09002 * 109.50444 * 298.69635 * 20 19 18 39 39 H 1.08998 * 109.50660 * 63.08921 * 21 20 19 40 40 H 1.09006 * 109.50070 * 183.17174 * 21 20 19 41 41 H 1.08995 * 109.47524 * 165.00788 * 23 22 21 42 42 H 1.09001 * 109.46664 * 285.00258 * 23 22 21 43 43 H 1.08992 * 109.47212 * 173.04485 * 24 23 22 44 44 H 1.09003 * 113.46789 * 321.86238 * 27 9 7 45 45 H 1.09002 * 113.46890 * 92.30092 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3932 2.1068 -1.3949 5 1 1.5039 2.6202 0.8020 6 1 3.5962 1.4122 0.5928 7 6 2.0103 -1.2022 -0.0005 8 1 3.0788 -1.2088 0.1561 9 7 1.3392 -2.3800 -0.1941 10 6 -0.0612 -2.7797 -0.3986 11 6 0.4603 -4.0080 -1.1624 12 6 0.7025 -3.7687 -2.6540 13 7 -0.5085 -4.1067 -3.4058 14 6 -0.5286 -3.9729 -4.7468 15 8 0.4561 -3.5731 -5.3310 16 6 -1.7741 -4.3212 -5.5202 17 1 -2.0218 -5.3703 -5.3581 18 6 -2.9340 -3.4426 -5.0440 19 8 -4.0937 -3.7246 -5.8320 20 6 -3.9053 -3.5056 -7.2327 21 6 -2.7552 -4.3848 -7.7310 22 7 -1.5442 -4.0859 -6.9530 23 6 -0.4002 -4.8693 -7.4383 24 6 -0.3630 -4.8246 -8.9671 25 9 -1.4722 -5.5051 -9.4806 26 9 -0.3933 -3.4931 -9.3956 27 6 1.7011 -3.8028 -0.2824 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5802 -3.0318 0.5262 30 1 -0.6241 -2.0854 -1.0226 31 1 -0.0861 -4.9285 -0.9569 32 1 0.9512 -2.7202 -2.8180 33 1 1.5275 -4.3951 -2.9932 34 1 -1.2960 -4.4269 -2.9385 35 1 -3.1454 -3.6554 -3.9961 36 1 -2.6647 -2.3923 -5.1556 37 1 -4.8191 -3.7639 -7.7677 38 1 -3.6650 -2.4569 -7.4080 39 1 -3.0189 -5.4349 -7.6050 40 1 -2.5711 -4.1798 -8.7856 41 1 0.5232 -4.4490 -7.0400 42 1 -0.5011 -5.9030 -7.1073 43 1 0.5513 -5.2999 -9.3224 44 1 2.6398 -3.9802 -0.8073 45 1 1.6467 -4.3246 0.6731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031876521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:40 Heat of formation + Delta-G solvation = -121.944961 kcal Electronic energy + Delta-G solvation = -30050.545575 eV Core-core repulsion = 25547.718954 eV Total energy + Delta-G solvation = -4502.826621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.07774 -47.93765 -41.63488 -40.24728 -39.41974 -36.92290 -35.65646 -34.24172 -32.75900 -31.37931 -30.28846 -28.01681 -27.06167 -26.32187 -25.73968 -24.21767 -23.44321 -22.34779 -21.32532 -20.35982 -19.03452 -18.67113 -18.39469 -18.02780 -17.75818 -17.39557 -16.97994 -16.93563 -16.66228 -16.33946 -16.01793 -15.82889 -15.63454 -15.56194 -15.02363 -14.92277 -14.79558 -14.49215 -14.31752 -14.12540 -13.84456 -13.37914 -13.23259 -13.19216 -12.99946 -12.98057 -12.76848 -12.60085 -12.54426 -12.25871 -12.12841 -11.81604 -11.59257 -11.47717 -11.07732 -10.98346 -10.80728 -10.54054 -10.07852 -9.50262 -8.90754 -7.92700 -5.21066 1.43108 1.46204 1.49376 1.53314 1.94886 2.46858 2.47503 2.81977 2.85774 3.29674 3.31412 3.50908 3.55893 3.62199 3.66661 3.77275 3.88255 3.90124 3.97479 3.99830 4.20252 4.23450 4.44840 4.54820 4.55601 4.61318 4.64815 4.76336 4.79610 4.81177 4.89332 4.91017 5.00854 5.11784 5.25763 5.41857 5.54715 5.57111 5.65487 5.77342 5.95238 5.98585 6.53991 6.92463 7.21092 7.61687 8.62543 9.25687 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002816 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.881527 B = 9939.047272 C =10008.466720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.644 5.644 10 C 0.156 3.844 11 C -0.123 4.123 12 C 0.164 3.836 13 N -0.707 5.707 14 C 0.517 3.483 15 O -0.561 6.561 16 C 0.043 3.957 17 H 0.103 0.897 18 C 0.075 3.925 19 O -0.385 6.385 20 C 0.056 3.944 21 C 0.008 3.992 22 N -0.534 5.534 23 C -0.008 4.008 24 C 0.262 3.738 25 F -0.209 7.209 26 F -0.212 7.212 27 C 0.124 3.876 28 H 0.247 0.753 29 H 0.022 0.978 30 H 0.034 0.966 31 H 0.123 0.877 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.127 0.873 36 H 0.046 0.954 37 H 0.126 0.874 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.155 0.845 44 H 0.051 0.949 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 -17.061 -16.252 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.370 5.370 10 C 0.031 3.969 11 C -0.142 4.142 12 C 0.040 3.960 13 N -0.359 5.359 14 C 0.303 3.697 15 O -0.439 6.439 16 C -0.069 4.069 17 H 0.120 0.880 18 C -0.002 4.002 19 O -0.303 6.303 20 C -0.021 4.021 21 C -0.119 4.119 22 N -0.261 5.261 23 C -0.136 4.136 24 C 0.208 3.792 25 F -0.191 7.191 26 F -0.194 7.194 27 C -0.001 4.001 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.140 0.860 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.144 0.856 36 H 0.065 0.935 37 H 0.144 0.856 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.172 0.828 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.981 -15.987 -16.613 23.819 hybrid contribution 0.094 0.656 0.556 0.864 sum -5.887 -15.331 -16.057 22.968 Atomic orbital electron populations 1.70005 1.06266 1.25407 1.58095 1.25519 0.96470 1.00550 1.03218 0.85181 0.78103 0.79749 0.77092 1.21982 1.22055 1.19067 1.19302 0.91543 0.83412 1.41264 0.90038 1.46103 1.05210 1.01142 1.84567 1.22169 0.87598 0.91834 0.95347 1.23037 0.99287 0.99273 0.92607 1.20691 0.86693 0.99253 0.89358 1.45864 1.17122 1.66746 1.06204 1.20540 0.89253 0.77344 0.82575 1.90609 1.37452 1.46586 1.69282 1.22281 0.93583 1.01964 0.89042 0.87950 1.22633 0.83470 0.97528 0.96605 1.88005 1.34755 1.88751 1.18768 1.22927 0.99098 0.98924 0.81134 1.23380 0.89443 0.99358 0.99750 1.61979 1.05236 1.57431 1.01443 1.23667 0.98008 0.98773 0.93112 1.22339 0.89154 0.75507 0.92192 1.92910 1.57328 1.79876 1.88973 1.92981 1.97097 1.38022 1.91265 1.22575 0.96536 0.84245 0.96793 0.94444 0.95988 0.94762 0.85955 0.94986 0.90955 0.74809 0.85562 0.93516 0.85642 0.92998 0.92496 0.87703 0.86365 0.90389 0.82809 0.93056 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 11.64 21.65 0.25 -57.31 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.97 46.79 29.56 68.60 2.03 48.81 16 4 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.23 -12.78 10.72 84.03 0.90 -11.88 16 8 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 9 N -0.64 -32.06 3.61 -737.94 -2.66 -34.72 16 10 C 0.16 6.87 6.87 83.27 0.57 7.44 16 11 C -0.12 -3.82 4.18 -10.37 -0.04 -3.86 16 12 C 0.16 5.26 5.51 86.38 0.48 5.74 16 13 N -0.71 -17.81 5.46 -463.08 -2.53 -20.34 16 14 C 0.52 14.21 6.89 87.66 0.60 14.81 16 15 O -0.56 -19.90 13.71 -3.03 -0.04 -19.95 16 16 C 0.04 0.93 2.35 44.18 0.10 1.03 16 17 H 0.10 1.69 8.14 -2.38 -0.02 1.68 16 18 C 0.08 1.64 6.16 72.02 0.44 2.09 16 19 O -0.38 -8.40 10.83 -148.98 -1.61 -10.01 16 20 C 0.06 1.05 7.01 72.02 0.50 1.55 16 21 C 0.01 0.15 4.27 86.32 0.37 0.52 16 22 N -0.53 -12.22 4.33 -874.41 -3.79 -16.00 16 23 C -0.01 -0.15 4.99 86.30 0.43 0.28 16 24 C 0.26 4.29 5.13 71.98 0.37 4.66 16 25 F -0.21 -3.52 14.02 44.97 0.63 -2.89 16 26 F -0.21 -4.95 16.53 44.97 0.74 -4.21 16 27 C 0.12 4.55 8.25 83.18 0.69 5.23 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 1.73 7.27 -2.39 -0.02 1.71 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.41 7.68 7.96 -92.70 -0.74 6.94 16 35 H 0.13 2.20 7.67 -2.39 -0.02 2.18 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 0.97 8.03 -2.39 -0.02 0.95 16 40 H 0.11 2.03 5.03 -2.38 -0.01 2.02 16 41 H 0.12 2.95 5.54 -2.39 -0.01 2.94 16 42 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 43 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.75 363.86 -0.82 -76.57 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.28 Total: 15.67 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 5.88 Total: 24.37 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -8.73 Total: -128.37 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.65 Total: -29.95 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.37 Total: -7.10 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.75 -0.82 -76.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031876521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.373 kcal (2) G-P(sol) polarization free energy of solvation -75.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds