Wall clock time and date at job start Tue Mar 31 2020 17:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48503 * 109.47234 * 274.82080 * 3 2 1 5 5 H 1.48504 * 109.46996 * 34.81335 * 3 2 1 6 6 H 1.48498 * 109.47368 * 154.81573 * 3 2 1 7 7 C 1.38814 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00164 * 193.59589 * 7 2 1 9 9 N 1.36938 * 119.99548 * 13.59125 * 7 2 1 10 10 C 1.47066 * 136.05654 * 188.76386 * 9 7 2 11 11 C 1.53497 * 87.98720 * 207.08799 * 10 9 7 12 12 C 1.53004 * 114.20376 * 220.34452 * 11 10 9 13 13 N 1.46500 * 109.46773 * 184.99430 * 12 11 10 14 14 C 1.34778 * 119.99884 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99667 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00074 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.50958 * 33.86889 * 16 14 13 18 18 C 1.53102 * 109.50839 * 273.78856 * 16 14 13 19 19 O 1.43011 * 109.25908 * 183.21808 * 18 16 14 20 20 C 1.43013 * 113.74165 * 58.66465 * 19 18 16 21 21 C 1.53100 * 109.25917 * 301.33329 * 20 19 18 22 22 N 1.47008 * 109.50848 * 154.00121 * 16 14 13 23 23 C 1.46894 * 111.00150 * 302.32934 * 22 16 14 24 24 C 1.53003 * 109.47279 * 164.18216 * 23 22 16 25 25 F 1.39903 * 109.47031 * 305.55912 * 24 23 22 26 26 F 1.39892 * 109.47090 * 65.55879 * 24 23 22 27 27 C 1.47066 * 136.06242 * 8.71439 * 9 7 2 28 28 H 0.97001 * 120.00343 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46986 * 321.86857 * 10 9 7 30 30 H 1.09005 * 113.46768 * 92.30443 * 10 9 7 31 31 H 1.08994 * 114.20328 * 87.51938 * 11 10 9 32 32 H 1.08992 * 109.47001 * 304.99853 * 12 11 10 33 33 H 1.09000 * 109.46856 * 65.00222 * 12 11 10 34 34 H 0.96997 * 119.99790 * 0.02562 * 13 12 11 35 35 H 1.09006 * 109.50269 * 303.14844 * 18 16 14 36 36 H 1.08997 * 109.50629 * 63.23554 * 18 16 14 37 37 H 1.09003 * 109.50620 * 61.26558 * 20 19 18 38 38 H 1.08998 * 109.50912 * 181.39841 * 20 19 18 39 39 H 1.09001 * 109.50301 * 176.78319 * 21 20 19 40 40 H 1.08998 * 109.50289 * 296.86335 * 21 20 19 41 41 H 1.08997 * 109.47529 * 284.18054 * 23 22 16 42 42 H 1.08998 * 109.47045 * 44.18489 * 23 22 16 43 43 H 1.09002 * 109.47148 * 185.56526 * 24 23 22 44 44 H 1.08997 * 113.46613 * 267.69850 * 27 9 7 45 45 H 1.09007 * 113.46399 * 38.12806 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3958 2.1053 -1.3951 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4130 0.5958 7 6 2.0103 -1.2021 -0.0005 8 1 3.0676 -1.2153 0.2193 9 7 1.3543 -2.3713 -0.2798 10 6 1.6767 -3.8052 -0.2263 11 6 0.6429 -4.0239 -1.3396 12 6 -0.2154 -5.2778 -1.1611 13 7 -1.0779 -5.4500 -2.3327 14 6 -1.9258 -6.4956 -2.3975 15 8 -1.9752 -7.2937 -1.4856 16 6 -2.8126 -6.6731 -3.6029 17 1 -2.2903 -6.3238 -4.4936 18 6 -4.0990 -5.8646 -3.4148 19 8 -4.9684 -6.0959 -4.5264 20 6 -5.3198 -7.4705 -4.7063 21 6 -4.0457 -8.2952 -4.9076 22 7 -3.1518 -8.0951 -3.7577 23 6 -1.9395 -8.9148 -3.8845 24 6 -2.2909 -10.3851 -3.6486 25 9 -2.9395 -10.5176 -2.4161 26 9 -3.1352 -10.8324 -4.6704 27 6 0.0172 -2.7458 -0.7642 28 1 -0.4851 0.8400 0.0004 29 1 2.6982 -4.0322 -0.5317 30 1 1.4041 -4.2765 0.7180 31 1 1.0415 -3.9117 -2.3478 32 1 0.4313 -6.1487 -1.0548 33 1 -0.8321 -5.1720 -0.2685 34 1 -1.0381 -4.8119 -3.0622 35 1 -4.5937 -6.1765 -2.4948 36 1 -3.8567 -4.8035 -3.3560 37 1 -5.8499 -7.8291 -3.8240 38 1 -5.9605 -7.5708 -5.5824 39 1 -4.3046 -9.3510 -4.9880 40 1 -3.5440 -7.9730 -5.8200 41 1 -1.5239 -8.7966 -4.8852 42 1 -1.2050 -8.5938 -3.1459 43 1 -1.3780 -10.9807 -3.6446 44 1 -0.6974 -2.9348 0.0367 45 1 -0.3725 -2.0717 -1.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031876526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:45 Heat of formation + Delta-G solvation = -106.599210 kcal Electronic energy + Delta-G solvation = -29582.575097 eV Core-core repulsion = 25080.413918 eV Total energy + Delta-G solvation = -4502.161179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.15499 -47.09531 -40.70151 -38.99244 -38.11475 -36.12674 -34.50082 -32.37997 -31.80195 -30.72071 -28.93646 -26.73789 -26.04620 -24.79192 -24.62565 -22.70882 -22.26083 -21.29662 -20.34873 -19.18172 -18.07277 -17.65019 -17.13422 -17.03948 -16.75582 -16.52393 -16.32333 -15.82282 -15.27334 -15.10674 -14.90535 -14.60695 -14.49348 -14.22012 -14.03579 -13.91543 -13.53127 -13.43610 -13.18986 -12.96820 -12.66702 -12.53848 -12.30549 -12.08241 -11.77700 -11.56065 -11.42397 -11.30974 -11.17590 -10.82823 -10.78195 -10.63341 -10.16537 -10.01499 -9.89257 -9.66292 -9.32169 -8.94742 -8.84305 -8.78099 -6.95671 -5.85715 -3.15315 2.47542 2.85423 3.24562 3.35589 3.40848 3.43251 3.55931 3.64854 3.95354 4.19870 4.40766 4.49278 4.53174 4.58850 4.64509 4.71422 4.91196 4.92452 5.07939 5.12301 5.16650 5.22952 5.30905 5.33535 5.40063 5.49813 5.58545 5.61498 5.74912 5.92582 6.14930 6.26456 6.29899 6.41391 6.44925 6.58816 6.65272 6.76793 7.04300 7.25647 7.43347 7.50101 7.90868 8.18224 8.96467 9.63869 10.58512 11.32853 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.002379 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.791359 B =11764.942370 C =12666.779257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.223 4.223 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.160 4.160 12 C 0.135 3.865 13 N -0.720 5.720 14 C 0.511 3.489 15 O -0.516 6.516 16 C 0.033 3.967 17 H 0.072 0.928 18 C 0.077 3.923 19 O -0.378 6.378 20 C 0.061 3.939 21 C 0.002 3.998 22 N -0.508 5.508 23 C -0.001 4.001 24 C 0.274 3.726 25 F -0.188 7.188 26 F -0.208 7.208 27 C 0.169 3.831 28 H 0.254 0.746 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.033 0.967 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -19.903 -12.958 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.100 0.900 9 N -0.334 5.334 10 C 0.000 4.000 11 C -0.180 4.180 12 C 0.011 3.989 13 N -0.372 5.372 14 C 0.295 3.705 15 O -0.391 6.391 16 C -0.079 4.079 17 H 0.090 0.910 18 C -0.001 4.001 19 O -0.296 6.296 20 C -0.015 4.015 21 C -0.126 4.126 22 N -0.233 5.233 23 C -0.130 4.130 24 C 0.219 3.781 25 F -0.169 7.169 26 F -0.190 7.190 27 C 0.043 3.957 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.051 0.949 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.355 -20.111 -11.889 24.493 hybrid contribution 0.905 1.266 -0.753 1.729 sum -6.451 -18.845 -12.643 23.592 Atomic orbital electron populations 1.69897 1.05118 1.25582 1.55469 1.24841 0.95587 0.97829 1.02044 0.86115 0.78768 0.83380 0.77584 1.21500 1.21713 1.20483 1.18947 0.91752 0.82097 1.42275 0.90043 1.45722 1.11762 0.99316 1.76616 1.22317 0.95965 0.87253 0.94501 1.23599 0.99174 0.94927 1.00307 1.21382 0.92049 0.97916 0.87565 1.46141 1.40436 1.27587 1.23074 1.20115 0.80573 0.81765 0.88033 1.90752 1.67109 1.43006 1.38271 1.22351 0.97969 0.90287 0.97338 0.90978 1.22570 0.87544 0.99623 0.90348 1.88030 1.66263 1.25646 1.49625 1.22724 0.95222 0.81151 1.02449 1.23302 0.94639 1.03598 0.91046 1.61880 1.14893 1.04953 1.41600 1.23346 0.94041 0.92346 1.03301 1.21855 0.88606 0.95546 0.72060 1.93043 1.83859 1.96770 1.43210 1.92866 1.74776 1.90751 1.60584 1.22007 0.88935 0.89410 0.95340 0.93571 0.93998 0.94816 0.88896 0.91782 0.91087 0.76400 0.91124 0.87280 0.91814 0.88030 0.87237 0.93535 0.91646 0.86997 0.86978 0.94884 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.93 12.16 55.49 0.67 -26.26 16 2 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 3 Si 0.91 21.82 29.57 -169.99 -5.03 16.79 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 8 H 0.08 2.18 7.87 -52.49 -0.41 1.77 16 9 N -0.61 -15.26 3.75 -184.78 -0.69 -15.95 16 10 C 0.13 2.47 8.26 -8.52 -0.07 2.40 16 11 C -0.16 -2.65 4.10 -90.10 -0.37 -3.02 16 12 C 0.13 1.90 5.59 -4.04 -0.02 1.88 16 13 N -0.72 -8.55 5.56 -60.30 -0.33 -8.89 16 14 C 0.51 6.45 5.81 -10.99 -0.06 6.38 16 15 O -0.52 -8.40 15.44 5.56 0.09 -8.31 16 16 C 0.03 0.34 2.38 -68.76 -0.16 0.17 16 17 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 18 C 0.08 0.81 6.27 37.21 0.23 1.04 16 19 O -0.38 -4.07 10.83 -35.23 -0.38 -4.45 16 20 C 0.06 0.54 7.01 37.21 0.26 0.80 16 21 C 0.00 0.01 5.31 -3.71 -0.02 -0.01 16 22 N -0.51 -5.30 4.06 -227.74 -0.92 -6.22 16 23 C 0.00 -0.01 5.00 -3.83 -0.02 -0.03 16 24 C 0.27 2.32 5.56 37.16 0.21 2.53 16 25 F -0.19 -2.31 17.16 2.25 0.04 -2.27 16 26 F -0.21 -1.86 14.46 2.25 0.03 -1.83 16 27 C 0.17 3.73 6.77 -8.52 -0.06 3.67 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.13 7.81 -51.93 -0.41 0.72 16 34 H 0.40 4.00 8.47 -40.82 -0.35 3.65 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.93 5.40 -51.93 -0.28 0.65 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 42 H 0.11 1.14 5.90 -51.93 -0.31 0.83 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.78 7.87 -51.93 -0.41 0.37 16 45 H 0.05 1.24 7.90 -51.92 -0.41 0.83 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -34.19 369.64 -8.07 -42.27 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.77 Total: 0.35 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.34 Total: 9.20 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -1.28 Total: -57.32 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.30 Total: -12.76 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.19 -8.07 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031876526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.333 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds