Wall clock time and date at job start Tue Mar 31 2020 17:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48503 * 109.47234 * 274.82080 * 3 2 1 5 5 H 1.48504 * 109.46996 * 34.81335 * 3 2 1 6 6 H 1.48498 * 109.47368 * 154.81573 * 3 2 1 7 7 C 1.38814 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00164 * 193.59589 * 7 2 1 9 9 N 1.36938 * 119.99548 * 13.59125 * 7 2 1 10 10 C 1.47066 * 136.05654 * 188.76386 * 9 7 2 11 11 C 1.53497 * 87.98720 * 207.08799 * 10 9 7 12 12 C 1.53004 * 114.20376 * 220.34452 * 11 10 9 13 13 N 1.46500 * 109.46773 * 184.99430 * 12 11 10 14 14 C 1.34778 * 119.99884 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99667 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00074 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.50958 * 33.86889 * 16 14 13 18 18 C 1.53102 * 109.50839 * 273.78856 * 16 14 13 19 19 O 1.43011 * 109.25908 * 183.21808 * 18 16 14 20 20 C 1.43013 * 113.74165 * 58.66465 * 19 18 16 21 21 C 1.53100 * 109.25917 * 301.33329 * 20 19 18 22 22 N 1.47008 * 109.50848 * 154.00121 * 16 14 13 23 23 C 1.46894 * 111.00150 * 302.32934 * 22 16 14 24 24 C 1.53003 * 109.47279 * 164.18216 * 23 22 16 25 25 F 1.39903 * 109.47031 * 305.55912 * 24 23 22 26 26 F 1.39892 * 109.47090 * 65.55879 * 24 23 22 27 27 C 1.47066 * 136.06242 * 8.71439 * 9 7 2 28 28 H 0.97001 * 120.00343 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46986 * 321.86857 * 10 9 7 30 30 H 1.09005 * 113.46768 * 92.30443 * 10 9 7 31 31 H 1.08994 * 114.20328 * 87.51938 * 11 10 9 32 32 H 1.08992 * 109.47001 * 304.99853 * 12 11 10 33 33 H 1.09000 * 109.46856 * 65.00222 * 12 11 10 34 34 H 0.96997 * 119.99790 * 0.02562 * 13 12 11 35 35 H 1.09006 * 109.50269 * 303.14844 * 18 16 14 36 36 H 1.08997 * 109.50629 * 63.23554 * 18 16 14 37 37 H 1.09003 * 109.50620 * 61.26558 * 20 19 18 38 38 H 1.08998 * 109.50912 * 181.39841 * 20 19 18 39 39 H 1.09001 * 109.50301 * 176.78319 * 21 20 19 40 40 H 1.08998 * 109.50289 * 296.86335 * 21 20 19 41 41 H 1.08997 * 109.47529 * 284.18054 * 23 22 16 42 42 H 1.08998 * 109.47045 * 44.18489 * 23 22 16 43 43 H 1.09002 * 109.47148 * 185.56526 * 24 23 22 44 44 H 1.08997 * 113.46613 * 267.69850 * 27 9 7 45 45 H 1.09007 * 113.46399 * 38.12806 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3958 2.1053 -1.3951 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4130 0.5958 7 6 2.0103 -1.2021 -0.0005 8 1 3.0676 -1.2153 0.2193 9 7 1.3543 -2.3713 -0.2798 10 6 1.6767 -3.8052 -0.2263 11 6 0.6429 -4.0239 -1.3396 12 6 -0.2154 -5.2778 -1.1611 13 7 -1.0779 -5.4500 -2.3327 14 6 -1.9258 -6.4956 -2.3975 15 8 -1.9752 -7.2937 -1.4856 16 6 -2.8126 -6.6731 -3.6029 17 1 -2.2903 -6.3238 -4.4936 18 6 -4.0990 -5.8646 -3.4148 19 8 -4.9684 -6.0959 -4.5264 20 6 -5.3198 -7.4705 -4.7063 21 6 -4.0457 -8.2952 -4.9076 22 7 -3.1518 -8.0951 -3.7577 23 6 -1.9395 -8.9148 -3.8845 24 6 -2.2909 -10.3851 -3.6486 25 9 -2.9395 -10.5176 -2.4161 26 9 -3.1352 -10.8324 -4.6704 27 6 0.0172 -2.7458 -0.7642 28 1 -0.4851 0.8400 0.0004 29 1 2.6982 -4.0322 -0.5317 30 1 1.4041 -4.2765 0.7180 31 1 1.0415 -3.9117 -2.3478 32 1 0.4313 -6.1487 -1.0548 33 1 -0.8321 -5.1720 -0.2685 34 1 -1.0381 -4.8119 -3.0622 35 1 -4.5937 -6.1765 -2.4948 36 1 -3.8567 -4.8035 -3.3560 37 1 -5.8499 -7.8291 -3.8240 38 1 -5.9605 -7.5708 -5.5824 39 1 -4.3046 -9.3510 -4.9880 40 1 -3.5440 -7.9730 -5.8200 41 1 -1.5239 -8.7966 -4.8852 42 1 -1.2050 -8.5938 -3.1459 43 1 -1.3780 -10.9807 -3.6446 44 1 -0.6974 -2.9348 0.0367 45 1 -0.3725 -2.0717 -1.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031876526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:44 Heat of formation + Delta-G solvation = -132.733393 kcal Electronic energy + Delta-G solvation = -29583.708360 eV Core-core repulsion = 25080.413918 eV Total energy + Delta-G solvation = -4503.294443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.85591 -47.84170 -41.60992 -40.23058 -39.42566 -36.90778 -35.72968 -34.25787 -32.73577 -31.40555 -30.52362 -27.94937 -27.14976 -26.38967 -25.70889 -23.85262 -23.37725 -22.22922 -21.41925 -20.57058 -18.90950 -18.69484 -18.37986 -17.99920 -17.78144 -17.40721 -17.17595 -16.91450 -16.69787 -16.23811 -15.90864 -15.77871 -15.58777 -15.39646 -15.01658 -14.86922 -14.81883 -14.52881 -14.20303 -14.08683 -13.80239 -13.46255 -13.33525 -13.27350 -13.02921 -12.87961 -12.77928 -12.67243 -12.50536 -12.22932 -12.13026 -11.84650 -11.70318 -11.50806 -11.10779 -10.95215 -10.82593 -10.60353 -10.06237 -9.54748 -8.95874 -7.96317 -5.26744 1.45880 1.47353 1.48594 1.56646 1.94024 2.45925 2.47737 2.85438 2.96590 3.27232 3.36313 3.41986 3.55188 3.61040 3.72265 3.76241 3.87921 3.93798 4.04565 4.10711 4.22598 4.24156 4.35146 4.44604 4.52202 4.59180 4.63066 4.65351 4.79294 4.82656 4.86246 4.87315 4.90056 5.08594 5.17671 5.37509 5.49641 5.55853 5.63503 5.74975 5.89425 6.00811 6.53588 6.87684 7.19846 7.57398 8.59483 9.22626 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.002379 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.791359 B =11764.942370 C =12666.779257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.086 0.914 9 N -0.643 5.643 10 C 0.122 3.878 11 C -0.115 4.115 12 C 0.147 3.853 13 N -0.712 5.712 14 C 0.517 3.483 15 O -0.554 6.554 16 C 0.041 3.959 17 H 0.096 0.904 18 C 0.077 3.923 19 O -0.387 6.387 20 C 0.057 3.943 21 C 0.007 3.993 22 N -0.531 5.531 23 C -0.001 4.001 24 C 0.267 3.733 25 F -0.214 7.214 26 F -0.211 7.211 27 C 0.165 3.835 28 H 0.249 0.751 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.414 0.586 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.151 0.849 44 H 0.012 0.988 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -20.879 -14.845 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.362 4.362 8 H 0.103 0.897 9 N -0.369 5.369 10 C -0.003 4.003 11 C -0.134 4.134 12 C 0.023 3.977 13 N -0.364 5.364 14 C 0.302 3.698 15 O -0.432 6.432 16 C -0.070 4.070 17 H 0.113 0.887 18 C -0.001 4.001 19 O -0.305 6.305 20 C -0.020 4.020 21 C -0.120 4.120 22 N -0.257 5.257 23 C -0.130 4.130 24 C 0.213 3.787 25 F -0.195 7.195 26 F -0.192 7.192 27 C 0.040 3.960 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.250 0.750 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.168 0.832 44 H 0.030 0.970 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.145 -21.114 -13.804 25.964 hybrid contribution 0.519 1.491 -0.148 1.586 sum -5.626 -19.623 -13.952 24.726 Atomic orbital electron populations 1.70064 1.06638 1.25872 1.57335 1.25689 0.96428 1.01182 1.02621 0.85058 0.77889 0.78939 0.77434 1.21121 1.22353 1.19044 1.19356 0.92313 0.83562 1.40977 0.89664 1.46142 1.12995 1.00896 1.76858 1.22510 0.97866 0.84187 0.95756 1.23215 0.97078 0.93020 1.00137 1.21094 0.91898 0.97020 0.87736 1.45994 1.39955 1.27789 1.22677 1.20461 0.80204 0.80950 0.88168 1.90741 1.68214 1.44398 1.39835 1.22259 0.97278 0.90719 0.96789 0.88681 1.22546 0.87648 1.00196 0.89692 1.88020 1.66275 1.26845 1.49384 1.22901 0.95721 0.80283 1.03073 1.23283 0.94226 1.03608 0.90881 1.61857 1.16048 1.04965 1.42866 1.23380 0.93221 0.92154 1.04245 1.22305 0.89399 0.96189 0.70786 1.92988 1.84550 1.96913 1.45089 1.92855 1.75107 1.90753 1.60531 1.21989 0.87989 0.91724 0.94344 0.94191 0.92104 0.94340 0.86865 0.90190 0.93008 0.74963 0.93021 0.86391 0.92850 0.85666 0.87100 0.92313 0.89078 0.88314 0.83166 0.97036 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 12.16 21.65 0.26 -57.08 16 2 C -0.07 -3.71 5.47 84.86 0.46 -3.25 16 3 Si 0.98 45.14 29.57 68.60 2.03 47.17 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 8 H 0.09 4.52 7.87 -2.91 -0.02 4.50 16 9 N -0.64 -32.23 3.75 -738.52 -2.77 -34.99 16 10 C 0.12 4.60 8.26 83.17 0.69 5.28 16 11 C -0.11 -3.61 4.10 -10.46 -0.04 -3.65 16 12 C 0.15 3.91 5.59 86.38 0.48 4.39 16 13 N -0.71 -15.63 5.56 -463.07 -2.57 -18.20 16 14 C 0.52 12.39 5.81 87.66 0.51 12.90 16 15 O -0.55 -17.79 15.44 -3.02 -0.05 -17.83 16 16 C 0.04 0.79 2.38 44.18 0.11 0.89 16 17 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 18 C 0.08 1.56 6.27 72.02 0.45 2.01 16 19 O -0.39 -7.84 10.83 -148.98 -1.61 -9.45 16 20 C 0.06 0.91 7.01 72.02 0.50 1.42 16 21 C 0.01 0.11 5.31 86.32 0.46 0.57 16 22 N -0.53 -10.27 4.06 -874.43 -3.55 -13.81 16 23 C 0.00 -0.02 5.00 86.31 0.43 0.41 16 24 C 0.27 4.04 5.56 71.98 0.40 4.44 16 25 F -0.21 -5.15 17.16 44.97 0.77 -4.38 16 26 F -0.21 -3.37 14.46 44.97 0.65 -2.72 16 27 C 0.17 7.40 6.77 83.17 0.56 7.96 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.44 8.10 -2.38 -0.02 1.42 16 31 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.62 7.81 -2.39 -0.02 1.60 16 34 H 0.41 7.24 8.47 -92.71 -0.79 6.45 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.69 5.40 -2.39 -0.01 1.68 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.93 8.05 -2.39 -0.02 0.92 16 42 H 0.10 1.84 5.90 -2.39 -0.01 1.82 16 43 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.01 0.57 7.87 -2.39 -0.02 0.55 16 45 H 0.03 1.30 7.90 -2.38 -0.02 1.28 16 Total: -1.00 -75.44 369.64 -0.69 -76.13 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.23 Total: 13.89 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 5.92 Total: 21.28 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -8.62 Total: -124.09 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.66 Total: -27.28 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 1.42 Total: -7.10 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.44 -0.69 -76.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031876526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.605 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds