Wall clock time and date at job start Tue Mar 31 2020 17:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47114 * 274.98951 * 3 2 1 5 5 H 1.48499 * 109.47503 * 34.98942 * 3 2 1 6 6 H 1.48501 * 109.47209 * 154.99242 * 3 2 1 7 7 C 1.38809 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00189 * 185.04224 * 7 2 1 9 9 N 1.36938 * 119.99752 * 5.05438 * 7 2 1 10 10 C 1.47809 * 134.58575 * 353.98711 * 9 7 2 11 11 C 1.53944 * 86.15896 * 204.58071 * 10 9 7 12 12 C 1.47580 * 134.48848 * 174.04080 * 9 7 2 13 13 H 1.09006 * 113.76695 * 269.77643 * 12 9 7 14 14 C 1.52999 * 113.77479 * 41.06218 * 12 9 7 15 15 N 1.46494 * 109.47273 * 283.65497 * 14 12 9 16 16 C 1.34774 * 120.00327 * 179.97438 * 15 14 12 17 17 O 1.21287 * 119.99582 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00266 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.51183 * 326.20050 * 18 16 15 20 20 C 1.53100 * 109.50765 * 86.28831 * 18 16 15 21 21 O 1.43017 * 109.25861 * 176.73538 * 20 18 16 22 22 C 1.43019 * 113.77849 * 301.39856 * 21 20 18 23 23 C 1.53103 * 109.25659 * 58.64493 * 22 21 20 24 24 N 1.47014 * 109.25688 * 303.15115 * 23 22 21 25 25 C 1.46903 * 111.00228 * 182.39119 * 24 23 22 26 26 C 1.53004 * 109.46511 * 71.78814 * 25 24 23 27 27 F 1.39895 * 109.47534 * 294.10060 * 26 25 24 28 28 F 1.39898 * 109.46990 * 54.10367 * 26 25 24 29 29 H 0.97003 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.09003 * 113.66766 * 90.26944 * 10 9 7 31 31 H 1.08996 * 113.93496 * 318.92151 * 10 9 7 32 32 H 1.09005 * 113.74044 * 222.13716 * 11 10 9 33 33 H 1.09002 * 113.74376 * 90.83116 * 11 10 9 34 34 H 1.09007 * 109.46697 * 43.65519 * 14 12 9 35 35 H 1.08997 * 109.46937 * 163.64916 * 14 12 9 36 36 H 0.97001 * 119.99908 * 359.97438 * 15 14 12 37 37 H 1.09001 * 109.50496 * 296.72121 * 20 18 16 38 38 H 1.09000 * 109.50671 * 56.84695 * 20 18 16 39 39 H 1.08995 * 109.50502 * 298.71225 * 22 21 20 40 40 H 1.08995 * 109.54268 * 178.59853 * 22 21 20 41 41 H 1.08996 * 109.50476 * 183.22059 * 23 22 21 42 42 H 1.08997 * 109.54084 * 63.10904 * 23 22 21 43 43 H 1.08997 * 109.47426 * 191.79398 * 25 24 23 44 44 H 1.09000 * 109.46457 * 311.79623 * 25 24 23 45 45 H 1.09004 * 109.46585 * 174.10133 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0827 9 7 1.3296 -2.3857 -0.1034 10 6 -0.0995 -2.7630 -0.1187 11 6 0.3658 -4.1418 0.3836 12 6 1.7289 -3.7995 -0.2444 13 1 1.8302 -4.1262 -1.2794 14 6 2.9248 -4.1923 0.6253 15 7 4.1570 -3.6782 0.0224 16 6 5.3442 -3.9039 0.6189 17 8 5.3926 -4.5332 1.6546 18 6 6.6118 -3.3755 -0.0016 19 1 6.5211 -3.3949 -1.0876 20 6 6.8488 -1.9370 0.4659 21 8 8.0910 -1.4672 -0.0646 22 6 9.2182 -2.2599 0.3181 23 6 9.0047 -3.7013 -0.1518 24 7 7.7470 -4.2136 0.4113 25 6 7.5320 -5.6159 0.0300 26 6 8.5146 -6.5078 0.7916 27 9 9.8199 -6.2255 0.3750 28 9 8.3997 -6.2623 2.1640 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5360 -2.7835 -1.1173 31 1 -0.7089 -2.2160 0.6007 32 1 -0.1415 -4.9781 -0.0974 33 1 0.3922 -4.2271 1.4700 34 1 2.8037 -3.7685 1.6223 35 1 2.9809 -5.2785 0.6966 36 1 4.1183 -3.1752 -0.8061 37 1 6.0373 -1.3010 0.1122 38 1 6.8853 -1.9096 1.5550 39 1 9.3238 -2.2426 1.4028 40 1 10.1204 -1.8570 -0.1420 41 1 9.8345 -4.3214 0.1874 42 1 8.9529 -3.7261 -1.2403 43 1 6.5109 -5.9070 0.2763 44 1 7.6937 -5.7297 -1.0419 45 1 8.2870 -7.5544 0.5893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038552970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:21 Heat of formation + Delta-G solvation = -109.365442 kcal Electronic energy + Delta-G solvation = -30462.207042 eV Core-core repulsion = 25959.925910 eV Total energy + Delta-G solvation = -4502.281132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.07424 -47.01362 -40.50531 -38.76771 -37.84670 -35.96234 -34.12050 -32.27100 -31.68432 -30.59772 -28.13726 -27.75276 -26.35068 -24.79882 -23.41435 -22.60008 -22.35179 -21.08852 -20.08127 -19.15903 -18.05256 -17.56646 -17.16306 -16.90545 -16.49757 -16.35093 -16.16916 -15.65048 -15.29232 -14.99415 -14.74337 -14.39164 -14.33601 -14.07016 -13.91892 -13.81969 -13.47687 -13.35810 -13.11916 -12.82985 -12.54555 -12.40721 -11.95176 -11.89036 -11.62166 -11.50402 -11.28443 -11.15066 -11.04327 -10.78105 -10.62903 -10.57722 -10.10328 -9.92171 -9.80354 -9.63347 -9.32731 -8.85130 -8.72740 -8.65562 -6.93369 -5.82309 -3.14247 2.69565 3.03773 3.35778 3.41256 3.43642 3.43709 3.66163 3.82200 4.03852 4.30130 4.38969 4.64116 4.68857 4.74377 4.81764 4.86639 5.03644 5.06511 5.11618 5.18877 5.34511 5.35844 5.49411 5.55190 5.56219 5.64395 5.65159 5.79542 5.85180 5.99321 6.24066 6.34477 6.41140 6.55707 6.56910 6.64221 6.79281 6.94323 7.20049 7.34180 7.53873 7.76296 7.92469 8.41953 8.98485 9.66295 10.54937 11.34890 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.003646 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.048243 B = 7677.701757 C = 9263.604440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.161 3.839 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.049 0.951 14 C 0.124 3.876 15 N -0.711 5.711 16 C 0.512 3.488 17 O -0.523 6.523 18 C 0.034 3.966 19 H 0.071 0.929 20 C 0.077 3.923 21 O -0.378 6.378 22 C 0.061 3.939 23 C 0.002 3.998 24 N -0.507 5.507 25 C -0.001 4.001 26 C 0.274 3.726 27 F -0.209 7.209 28 F -0.188 7.188 29 H 0.254 0.746 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -12.546 -2.791 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.036 3.964 11 C -0.195 4.195 12 C 0.017 3.983 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.362 5.362 16 C 0.295 3.705 17 O -0.399 6.399 18 C -0.078 4.078 19 H 0.089 0.911 20 C -0.001 4.001 21 O -0.296 6.296 22 C -0.016 4.016 23 C -0.126 4.126 24 N -0.233 5.233 25 C -0.130 4.130 26 C 0.219 3.781 27 F -0.190 7.190 28 F -0.169 7.169 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.238 0.762 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.304 -12.434 -1.582 19.782 hybrid contribution 0.374 0.991 -1.282 1.663 sum 15.678 -11.443 -2.865 19.620 Atomic orbital electron populations 1.69834 1.05043 1.25357 1.56051 1.24790 0.95605 0.97438 1.02302 0.86233 0.78912 0.83940 0.77535 1.21618 1.21693 1.20458 1.18912 0.90587 0.81938 1.43543 0.90349 1.46084 1.02214 0.99766 1.84794 1.22176 0.87872 0.88548 0.97788 1.23778 0.96207 0.98963 1.00561 1.22498 0.92220 0.87679 0.95864 0.93400 1.21778 0.82528 0.97362 0.98336 1.46041 1.06179 1.56146 1.27876 1.20058 0.84404 0.80777 0.85211 1.90724 1.86741 1.39973 1.22455 1.22334 0.90363 0.95967 0.99128 0.91130 1.22590 0.87141 0.90767 0.99603 1.88033 1.15094 1.52369 1.74062 1.22709 0.89322 0.89110 1.00446 1.23294 0.93054 0.98105 0.98099 1.61879 1.01595 1.00491 1.59349 1.23338 1.01739 0.89516 0.98401 1.21857 0.78683 0.99933 0.77585 1.92865 1.41095 1.94934 1.90119 1.93040 1.95705 1.96051 1.32088 0.93640 0.95402 0.91201 0.92787 0.90493 0.90909 0.92211 0.76211 0.87080 0.91163 0.91902 0.88131 0.87342 0.93611 0.86985 0.91766 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 11.51 55.49 0.64 -25.71 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.90 21.52 29.56 -169.99 -5.02 16.49 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.22 -5.74 10.50 -15.06 -0.16 -5.90 16 8 H 0.08 1.92 7.59 -52.49 -0.40 1.53 16 9 N -0.60 -14.07 3.58 -169.75 -0.61 -14.68 16 10 C 0.16 3.58 7.44 -2.85 -0.02 3.56 16 11 C -0.16 -2.72 7.86 -25.80 -0.20 -2.92 16 12 C 0.13 2.27 4.32 -66.87 -0.29 1.98 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.12 2.09 5.54 -4.05 -0.02 2.07 16 15 N -0.71 -11.04 5.33 -60.30 -0.32 -11.36 16 16 C 0.51 7.98 5.82 -10.99 -0.06 7.92 16 17 O -0.52 -9.79 15.44 5.55 0.09 -9.71 16 18 C 0.03 0.45 2.38 -68.75 -0.16 0.29 16 19 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 20 C 0.08 1.08 6.28 37.21 0.23 1.31 16 21 O -0.38 -5.15 10.82 -35.23 -0.38 -5.53 16 22 C 0.06 0.67 7.01 37.21 0.26 0.93 16 23 C 0.00 0.02 5.31 -3.71 -0.02 0.00 16 24 N -0.51 -6.38 4.05 -227.72 -0.92 -7.30 16 25 C 0.00 -0.01 5.00 -3.82 -0.02 -0.03 16 26 C 0.27 2.66 5.55 37.16 0.21 2.87 16 27 F -0.21 -2.11 14.46 2.25 0.03 -2.08 16 28 F -0.19 -2.54 17.15 2.25 0.04 -2.50 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.73 7.35 -51.93 -0.38 1.35 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.07 1.43 8.14 -51.92 -0.42 1.00 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 5.99 8.46 -40.82 -0.35 5.64 16 37 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.10 5.40 -51.93 -0.28 0.82 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.11 1.33 5.90 -51.93 -0.31 1.02 16 44 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 45 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -32.28 368.61 -8.02 -40.30 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.76 Total: 4.65 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -0.36 Total: 11.85 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -1.21 Total: -59.04 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.30 Total: -15.23 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.28 -8.02 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038552970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.062 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds