Wall clock time and date at job start Tue Mar 31 2020 17:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47114 * 274.98951 * 3 2 1 5 5 H 1.48499 * 109.47503 * 34.98942 * 3 2 1 6 6 H 1.48501 * 109.47209 * 154.99242 * 3 2 1 7 7 C 1.38809 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00189 * 185.04224 * 7 2 1 9 9 N 1.36938 * 119.99752 * 5.05438 * 7 2 1 10 10 C 1.47809 * 134.58575 * 353.98711 * 9 7 2 11 11 C 1.53944 * 86.15896 * 204.58071 * 10 9 7 12 12 C 1.47580 * 134.48848 * 174.04080 * 9 7 2 13 13 H 1.09006 * 113.76695 * 269.77643 * 12 9 7 14 14 C 1.52999 * 113.77479 * 41.06218 * 12 9 7 15 15 N 1.46494 * 109.47273 * 283.65497 * 14 12 9 16 16 C 1.34774 * 120.00327 * 179.97438 * 15 14 12 17 17 O 1.21287 * 119.99582 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00266 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.51183 * 326.20050 * 18 16 15 20 20 C 1.53100 * 109.50765 * 86.28831 * 18 16 15 21 21 O 1.43017 * 109.25861 * 176.73538 * 20 18 16 22 22 C 1.43019 * 113.77849 * 301.39856 * 21 20 18 23 23 C 1.53103 * 109.25659 * 58.64493 * 22 21 20 24 24 N 1.47014 * 109.25688 * 303.15115 * 23 22 21 25 25 C 1.46903 * 111.00228 * 182.39119 * 24 23 22 26 26 C 1.53004 * 109.46511 * 71.78814 * 25 24 23 27 27 F 1.39895 * 109.47534 * 294.10060 * 26 25 24 28 28 F 1.39898 * 109.46990 * 54.10367 * 26 25 24 29 29 H 0.97003 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.09003 * 113.66766 * 90.26944 * 10 9 7 31 31 H 1.08996 * 113.93496 * 318.92151 * 10 9 7 32 32 H 1.09005 * 113.74044 * 222.13716 * 11 10 9 33 33 H 1.09002 * 113.74376 * 90.83116 * 11 10 9 34 34 H 1.09007 * 109.46697 * 43.65519 * 14 12 9 35 35 H 1.08997 * 109.46937 * 163.64916 * 14 12 9 36 36 H 0.97001 * 119.99908 * 359.97438 * 15 14 12 37 37 H 1.09001 * 109.50496 * 296.72121 * 20 18 16 38 38 H 1.09000 * 109.50671 * 56.84695 * 20 18 16 39 39 H 1.08995 * 109.50502 * 298.71225 * 22 21 20 40 40 H 1.08995 * 109.54268 * 178.59853 * 22 21 20 41 41 H 1.08996 * 109.50476 * 183.22059 * 23 22 21 42 42 H 1.08997 * 109.54084 * 63.10904 * 23 22 21 43 43 H 1.08997 * 109.47426 * 191.79398 * 25 24 23 44 44 H 1.09000 * 109.46457 * 311.79623 * 25 24 23 45 45 H 1.09004 * 109.46585 * 174.10133 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0827 9 7 1.3296 -2.3857 -0.1034 10 6 -0.0995 -2.7630 -0.1187 11 6 0.3658 -4.1418 0.3836 12 6 1.7289 -3.7995 -0.2444 13 1 1.8302 -4.1262 -1.2794 14 6 2.9248 -4.1923 0.6253 15 7 4.1570 -3.6782 0.0224 16 6 5.3442 -3.9039 0.6189 17 8 5.3926 -4.5332 1.6546 18 6 6.6118 -3.3755 -0.0016 19 1 6.5211 -3.3949 -1.0876 20 6 6.8488 -1.9370 0.4659 21 8 8.0910 -1.4672 -0.0646 22 6 9.2182 -2.2599 0.3181 23 6 9.0047 -3.7013 -0.1518 24 7 7.7470 -4.2136 0.4113 25 6 7.5320 -5.6159 0.0300 26 6 8.5146 -6.5078 0.7916 27 9 9.8199 -6.2255 0.3750 28 9 8.3997 -6.2623 2.1640 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5360 -2.7835 -1.1173 31 1 -0.7089 -2.2160 0.6007 32 1 -0.1415 -4.9781 -0.0974 33 1 0.3922 -4.2271 1.4700 34 1 2.8037 -3.7685 1.6223 35 1 2.9809 -5.2785 0.6966 36 1 4.1183 -3.1752 -0.8061 37 1 6.0373 -1.3010 0.1122 38 1 6.8853 -1.9096 1.5550 39 1 9.3238 -2.2426 1.4028 40 1 10.1204 -1.8570 -0.1420 41 1 9.8345 -4.3214 0.1874 42 1 8.9529 -3.7261 -1.2403 43 1 6.5109 -5.9070 0.2763 44 1 7.6937 -5.7297 -1.0419 45 1 8.2870 -7.5544 0.5893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038552970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:20 Heat of formation + Delta-G solvation = -133.486215 kcal Electronic energy + Delta-G solvation = -30463.252997 eV Core-core repulsion = 25959.925910 eV Total energy + Delta-G solvation = -4503.327087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.87044 -47.85431 -41.61494 -40.06426 -39.30097 -36.92509 -35.49226 -34.20004 -32.74126 -31.42114 -29.89482 -29.23661 -27.29252 -25.87857 -25.26805 -23.78204 -23.39846 -22.20219 -21.29480 -20.73919 -19.11838 -18.53427 -18.34372 -17.91218 -17.80906 -17.39809 -17.20561 -17.00732 -16.68861 -16.16068 -15.89975 -15.74778 -15.58961 -15.35062 -15.04755 -14.87372 -14.84518 -14.59567 -14.21113 -13.87027 -13.70974 -13.39071 -13.32893 -13.20132 -12.92430 -12.81289 -12.65947 -12.56187 -12.55087 -12.28034 -12.14758 -11.84892 -11.54709 -11.51521 -11.34951 -10.93698 -10.81379 -10.61551 -10.03034 -9.58138 -8.84993 -7.86191 -5.16351 1.45983 1.47082 1.47507 1.54244 1.95151 2.44227 2.49354 2.80958 2.94708 3.32180 3.34646 3.41660 3.53122 3.68105 3.69617 3.81910 3.90721 4.01181 4.02450 4.13152 4.18823 4.21547 4.37521 4.42660 4.47912 4.57601 4.61603 4.64948 4.73278 4.78835 4.85734 4.89670 5.07876 5.13063 5.36488 5.42500 5.52350 5.63315 5.72917 5.76237 5.96212 5.99145 6.52387 6.96892 7.18399 7.67999 8.63142 9.31607 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.003646 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.048243 B = 7677.701757 C = 9263.604440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.210 4.210 8 H 0.088 0.912 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.131 4.131 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.135 3.865 15 N -0.708 5.708 16 C 0.516 3.484 17 O -0.556 6.556 18 C 0.044 3.956 19 H 0.091 0.909 20 C 0.079 3.921 21 O -0.388 6.388 22 C 0.055 3.945 23 C 0.007 3.993 24 N -0.530 5.530 25 C -0.002 4.002 26 C 0.269 3.731 27 F -0.210 7.210 28 F -0.214 7.214 29 H 0.244 0.756 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.408 0.592 37 H 0.106 0.894 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.096 -14.406 -4.157 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.192 1.192 7 C -0.339 4.339 8 H 0.106 0.894 9 N -0.356 5.356 10 C 0.026 3.974 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.010 3.990 15 N -0.359 5.359 16 C 0.302 3.698 17 O -0.434 6.434 18 C -0.068 4.068 19 H 0.108 0.892 20 C 0.001 3.999 21 O -0.306 6.306 22 C -0.021 4.021 23 C -0.120 4.120 24 N -0.256 5.256 25 C -0.130 4.130 26 C 0.215 3.785 27 F -0.192 7.192 28 F -0.195 7.195 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.244 0.756 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.250 -14.327 -2.967 22.620 hybrid contribution -0.167 1.479 -0.848 1.713 sum 17.083 -12.848 -3.816 21.714 Atomic orbital electron populations 1.70008 1.06333 1.25101 1.58854 1.25489 0.96304 1.00382 1.03959 0.85328 0.78104 0.80484 0.77163 1.21535 1.23024 1.19215 1.19299 0.91174 0.82972 1.40416 0.89419 1.46433 1.03152 1.01171 1.84836 1.22146 0.87170 0.91273 0.96795 1.23570 0.95281 0.97307 1.00812 1.22668 0.93132 0.84325 0.97168 0.91048 1.21552 0.82628 0.98497 0.96354 1.45998 1.05909 1.56065 1.27945 1.20413 0.84953 0.79888 0.84582 1.90711 1.87217 1.41506 1.23939 1.22192 0.89468 0.95300 0.99837 0.89151 1.22463 0.87597 0.91421 0.98460 1.88019 1.15391 1.53153 1.74046 1.22939 0.89340 0.89516 1.00326 1.23294 0.92317 0.97644 0.98714 1.61866 1.01823 1.01494 1.60442 1.23395 1.01244 0.88352 1.00048 1.22295 0.78324 1.01932 0.75962 1.92855 1.41262 1.95106 1.89969 1.92987 1.95836 1.96335 1.34356 0.94684 0.95999 0.94852 0.88779 0.90405 0.94019 0.89832 0.75629 0.87579 0.93073 0.92805 0.85410 0.86752 0.92339 0.88364 0.89115 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 11.51 21.65 0.25 -56.28 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 44.94 29.56 68.60 2.03 46.97 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.21 -10.82 10.50 84.03 0.88 -9.94 16 8 H 0.09 4.24 7.59 -2.91 -0.02 4.21 16 9 N -0.63 -29.08 3.58 -690.96 -2.48 -31.55 16 10 C 0.15 6.73 7.44 86.44 0.64 7.37 16 11 C -0.13 -4.26 7.86 31.25 0.25 -4.02 16 12 C 0.13 4.51 4.32 45.09 0.20 4.71 16 13 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 14 C 0.13 4.26 5.54 86.38 0.48 4.74 16 15 N -0.71 -20.68 5.33 -463.07 -2.47 -23.14 16 16 C 0.52 15.41 5.82 87.66 0.51 15.92 16 17 O -0.56 -20.41 15.44 -3.05 -0.05 -20.46 16 18 C 0.04 1.09 2.38 44.18 0.11 1.19 16 19 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.08 2.14 6.28 72.02 0.45 2.59 16 21 O -0.39 -9.99 10.82 -148.98 -1.61 -11.60 16 22 C 0.06 1.10 7.01 72.02 0.50 1.61 16 23 C 0.01 0.14 5.31 86.32 0.46 0.59 16 24 N -0.53 -12.30 4.05 -874.37 -3.54 -15.84 16 25 C 0.00 -0.03 5.00 86.30 0.43 0.40 16 26 C 0.27 4.56 5.55 71.98 0.40 4.96 16 27 F -0.21 -3.71 14.46 44.97 0.65 -3.06 16 28 F -0.21 -5.55 17.15 44.97 0.77 -4.77 16 29 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.03 1.71 7.35 -2.39 -0.02 1.69 16 32 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.08 2.54 8.10 -2.39 -0.02 2.52 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.41 11.22 8.46 -92.71 -0.78 10.43 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.11 2.03 5.40 -2.39 -0.01 2.02 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 2.12 5.90 -2.39 -0.01 2.11 16 44 H 0.09 1.18 8.05 -2.39 -0.02 1.16 16 45 H 0.15 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -71.61 368.61 -0.45 -72.06 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.23 Total: 20.87 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 5.77 Total: 26.81 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -8.24 Total: -126.82 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.66 Total: -32.06 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 1.42 Total: -7.83 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.61 -0.45 -72.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038552970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.431 kcal (2) G-P(sol) polarization free energy of solvation -71.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds