Wall clock time and date at job start Tue Mar 31 2020 17:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48496 * 109.47061 * 271.17871 * 3 2 1 5 5 H 1.48504 * 109.47090 * 31.17880 * 3 2 1 6 6 H 1.48502 * 109.47003 * 151.17964 * 3 2 1 7 7 C 1.38813 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00016 * 337.57709 * 7 2 1 9 9 N 1.36934 * 120.00150 * 157.57567 * 7 2 1 10 10 C 1.47772 * 121.64819 * 148.40155 * 9 7 2 11 11 C 1.52991 * 108.81684 * 83.02890 * 10 9 7 12 12 N 1.47110 * 109.17336 * 57.75182 * 11 10 9 13 13 C 1.35515 * 118.10999 * 259.43126 * 12 11 10 14 14 O 1.21279 * 120.23576 * 359.90137 * 13 12 11 15 15 C 1.50698 * 119.52058 * 179.97438 * 13 12 11 16 16 C 1.53608 * 109.49597 * 245.65915 * 15 13 12 17 17 N 1.47745 * 108.47785 * 55.02247 * 16 15 13 18 18 C 1.34771 * 121.65469 * 87.79885 * 17 16 15 19 19 O 1.21277 * 120.00148 * 179.71739 * 18 17 16 20 20 C 1.50704 * 119.99868 * 359.71911 * 18 17 16 21 21 C 1.53005 * 109.46871 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.46858 * 179.97438 * 21 20 18 23 23 F 1.39901 * 109.47006 * 184.99989 * 22 21 20 24 24 F 1.39896 * 109.47085 * 65.00141 * 22 21 20 25 25 C 1.47777 * 116.69212 * 267.53263 * 17 16 15 26 26 C 1.47740 * 121.64530 * 328.42607 * 9 7 2 27 27 H 0.96999 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.57690 * 202.83152 * 10 9 7 29 29 H 1.09001 * 109.57487 * 323.09582 * 10 9 7 30 30 H 1.08998 * 109.51672 * 177.65883 * 11 10 9 31 31 H 1.08992 * 109.52247 * 297.84082 * 11 10 9 32 32 H 0.97003 * 120.94538 * 79.41474 * 12 11 10 33 33 H 1.08995 * 109.48092 * 5.71038 * 15 13 12 34 34 H 1.09002 * 109.47631 * 125.72234 * 15 13 12 35 35 H 1.08999 * 109.60420 * 295.40285 * 16 15 13 36 36 H 1.09002 * 109.87096 * 174.79815 * 16 15 13 37 37 H 1.09002 * 109.47087 * 59.99988 * 20 18 17 38 38 H 1.08996 * 109.47137 * 299.99456 * 20 18 17 39 39 H 1.09002 * 109.47047 * 60.00242 * 21 20 18 40 40 H 1.08999 * 109.47367 * 300.00490 * 21 20 18 41 41 H 1.09001 * 109.47120 * 305.00037 * 22 21 20 42 42 H 1.08994 * 109.58493 * 250.11045 * 25 17 16 43 43 H 1.09006 * 109.58116 * 10.38688 * 25 17 16 44 44 H 1.09004 * 109.57943 * 194.84928 * 26 9 7 45 45 H 1.09006 * 109.58126 * 74.45401 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4727 2.0609 -1.3997 5 1 1.4602 2.6454 0.7249 6 1 3.5600 1.4332 0.6749 7 6 2.0104 -1.2021 0.0005 8 1 1.5316 -2.1019 0.3577 9 7 3.3020 -1.2471 -0.4518 10 6 4.2863 -2.1977 0.1061 11 6 4.1126 -3.5510 -0.5861 12 7 4.2833 -3.3770 -2.0369 13 6 3.1705 -3.3112 -2.8074 14 8 2.0715 -3.3966 -2.3016 15 6 3.3085 -3.1327 -4.2974 16 6 2.7320 -1.7688 -4.7059 17 7 3.4024 -0.7198 -3.9104 18 6 4.5536 -0.1500 -4.3184 19 8 5.0757 0.7123 -3.6441 20 6 5.1921 -0.5844 -5.6125 21 6 6.4778 0.2133 -5.8398 22 6 7.1263 -0.2281 -7.1533 23 9 8.3580 0.4177 -7.3054 24 9 6.2889 0.1070 -8.2226 25 6 2.7450 -0.3219 -2.6481 26 6 3.7805 -0.3473 -1.5214 27 1 -0.4850 0.8400 -0.0004 28 1 5.2950 -1.8242 -0.0697 29 1 4.1196 -2.3092 1.1775 30 1 4.8610 -4.2498 -0.2125 31 1 3.1153 -3.9398 -0.3808 32 1 5.1673 -3.3110 -2.4307 33 1 4.3619 -3.1797 -4.5731 34 1 2.7630 -3.9248 -4.8103 35 1 1.6606 -1.7500 -4.5064 36 1 2.9112 -1.5935 -5.7667 37 1 4.5022 -0.4035 -6.4367 38 1 5.4278 -1.6474 -5.5625 39 1 7.1679 0.0328 -5.0156 40 1 6.2419 1.2763 -5.8898 41 1 7.2813 -1.3070 -7.1374 42 1 2.3392 0.6846 -2.7490 43 1 1.9391 -1.0196 -2.4203 44 1 4.7311 -0.7138 -1.9091 45 1 3.9103 0.6585 -1.1218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131369559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:16 Heat of formation + Delta-G solvation = -133.322906 kcal Electronic energy + Delta-G solvation = -31654.325336 eV Core-core repulsion = 27151.005330 eV Total energy + Delta-G solvation = -4503.320006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.19713 -47.20988 -40.18901 -38.88047 -36.24382 -35.64650 -34.13208 -33.69861 -31.63147 -30.68292 -29.86179 -27.77137 -26.29123 -24.62796 -23.73434 -23.00060 -21.80300 -20.23252 -19.92246 -18.91583 -17.86041 -17.60184 -17.26787 -16.66434 -16.58741 -16.27311 -16.03142 -15.40352 -15.22048 -14.89042 -14.62616 -14.18071 -14.08023 -13.83616 -13.59518 -13.52995 -13.24298 -13.04260 -12.97588 -12.65202 -12.49022 -12.36686 -12.27089 -11.94480 -11.82403 -11.68736 -11.49629 -11.33757 -11.13899 -10.81294 -10.62092 -10.43214 -10.31197 -9.95525 -9.53351 -9.40678 -9.21417 -8.80034 -8.37620 -8.25369 -6.76500 -5.89068 -3.23913 2.74567 3.01087 3.21872 3.43674 3.55908 3.60095 3.62577 3.73625 3.94441 4.19967 4.29204 4.61636 4.63005 4.79474 4.80915 4.93130 4.98220 5.06194 5.16277 5.24022 5.42479 5.45141 5.56588 5.61500 5.75218 5.76725 5.80634 5.96820 6.03170 6.05169 6.15805 6.43895 6.46432 6.55389 6.64789 6.85912 7.02590 7.10633 7.70294 7.97807 8.05520 8.34067 8.44485 8.84333 9.02319 9.79479 10.22339 11.26916 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.004445 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.966818 B = 6298.190505 C = 7060.486918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 0.870 3.130 4 H -0.282 1.282 5 H -0.306 1.306 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.084 0.916 9 N -0.602 5.602 10 C 0.125 3.875 11 C 0.091 3.909 12 N -0.726 5.726 13 C 0.514 3.486 14 O -0.504 6.504 15 C -0.159 4.159 16 C 0.116 3.884 17 N -0.611 5.611 18 C 0.512 3.488 19 O -0.536 6.536 20 C -0.141 4.141 21 C -0.156 4.156 22 C 0.262 3.738 23 F -0.207 7.207 24 F -0.207 7.207 25 C 0.093 3.907 26 C 0.139 3.861 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.389 0.611 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.128 0.872 44 H 0.056 0.944 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -7.587 -14.636 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.702 3.298 4 H -0.210 1.210 5 H -0.235 1.235 6 H -0.205 1.205 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.326 5.326 10 C -0.002 4.002 11 C -0.035 4.035 12 N -0.379 5.379 13 C 0.299 3.701 14 O -0.377 6.377 15 C -0.201 4.201 16 C -0.008 4.008 17 N -0.344 5.344 18 C 0.299 3.701 19 O -0.413 6.413 20 C -0.181 4.181 21 C -0.195 4.195 22 C 0.208 3.792 23 F -0.188 7.188 24 F -0.189 7.189 25 C -0.029 4.029 26 C 0.013 3.987 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.222 0.778 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.074 0.926 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 12.557 -7.052 -13.891 20.009 hybrid contribution 0.935 1.206 -0.346 1.565 sum 13.492 -5.846 -14.237 20.467 Atomic orbital electron populations 1.69887 1.05654 1.26247 1.52485 1.25275 0.94986 0.96996 0.99452 0.87205 0.79533 0.85375 0.77706 1.20963 1.23487 1.20464 1.18622 0.85629 0.94220 1.38120 0.89886 1.44808 1.08592 1.40837 1.38373 1.21525 0.92016 0.89932 0.96720 1.22224 1.02688 0.98813 0.79798 1.46045 1.07748 1.75794 1.08279 1.20319 0.84970 0.76593 0.88240 1.90820 1.25239 1.47131 1.74528 1.22307 1.02654 0.99847 0.95247 1.21906 0.98927 0.84888 0.95081 1.48962 1.23265 1.38435 1.23787 1.20220 0.80869 0.82051 0.86912 1.90738 1.62494 1.31506 1.56577 1.21644 0.97358 1.01504 0.97634 1.22417 0.97878 1.03431 0.95738 1.21967 0.75022 0.96981 0.85195 1.92991 1.44864 1.84664 1.96276 1.92987 1.72030 1.94434 1.59405 1.22853 0.97389 1.01828 0.80793 1.21475 0.95137 0.93956 0.88107 0.92976 0.94184 0.92237 0.92622 0.89181 0.77814 0.90804 0.87899 0.88560 0.89815 0.88162 0.88564 0.87880 0.88602 0.87220 0.92615 0.85444 0.92608 0.95962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.97 55.49 0.78 -26.71 16 2 C 0.03 0.93 4.63 -17.43 -0.08 0.85 16 3 Si 0.87 23.29 23.64 -169.99 -4.02 19.27 16 4 H -0.28 -7.52 5.77 56.52 0.33 -7.19 16 5 H -0.31 -8.36 7.11 56.52 0.40 -7.96 16 6 H -0.28 -7.53 6.97 56.52 0.39 -7.14 16 7 C -0.24 -6.49 8.70 -15.06 -0.13 -6.62 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.60 -13.83 1.96 -171.17 -0.33 -14.17 16 10 C 0.13 2.32 6.09 -3.35 -0.02 2.30 16 11 C 0.09 1.43 6.58 -3.71 -0.02 1.40 16 12 N -0.73 -10.12 4.70 -59.70 -0.28 -10.40 16 13 C 0.51 8.06 4.75 -10.65 -0.05 8.01 16 14 O -0.50 -10.66 15.09 5.56 0.08 -10.57 16 15 C -0.16 -1.67 6.20 -27.57 -0.17 -1.84 16 16 C 0.12 1.36 5.55 -3.04 -0.02 1.34 16 17 N -0.61 -9.53 2.42 -171.24 -0.41 -9.94 16 18 C 0.51 7.48 7.05 -10.99 -0.08 7.40 16 19 O -0.54 -10.14 14.35 5.56 0.08 -10.06 16 20 C -0.14 -1.25 4.30 -27.88 -0.12 -1.37 16 21 C -0.16 -1.41 4.73 -26.73 -0.13 -1.54 16 22 C 0.26 2.00 5.29 37.16 0.20 2.20 16 23 F -0.21 -2.07 17.34 2.25 0.04 -2.03 16 24 F -0.21 -1.97 17.02 2.25 0.04 -1.93 16 25 C 0.09 1.98 3.85 -3.31 -0.01 1.96 16 26 C 0.14 3.08 3.44 -3.33 -0.01 3.07 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.04 0.68 7.76 -51.93 -0.40 0.27 16 29 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.72 7.01 -51.93 -0.36 1.36 16 32 H 0.39 4.21 8.71 -40.82 -0.36 3.86 16 33 H 0.07 0.55 6.85 -51.93 -0.36 0.19 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.31 7.80 -51.93 -0.41 0.91 16 36 H 0.08 0.66 6.77 -51.93 -0.35 0.30 16 37 H 0.10 0.77 7.31 -51.93 -0.38 0.39 16 38 H 0.10 0.56 7.06 -51.93 -0.37 0.19 16 39 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.10 1.06 8.10 -51.93 -0.42 0.63 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.34 6.23 -51.93 -0.32 1.01 16 43 H 0.13 3.09 4.72 -51.93 -0.25 2.85 16 44 H 0.06 1.14 5.89 -51.93 -0.31 0.83 16 45 H 0.02 0.58 4.10 -51.93 -0.21 0.37 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -36.21 346.82 -5.69 -41.90 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.24 Total: 2.26 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -0.65 Total: 17.15 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.25 Total: -61.23 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.16 Total: -20.63 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.02 Total: 19.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.21 -5.69 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131369559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.419 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds