Wall clock time and date at job start Tue Mar 31 2020 17:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48496 * 109.47061 * 271.17871 * 3 2 1 5 5 H 1.48504 * 109.47090 * 31.17880 * 3 2 1 6 6 H 1.48502 * 109.47003 * 151.17964 * 3 2 1 7 7 C 1.38813 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00016 * 337.57709 * 7 2 1 9 9 N 1.36934 * 120.00150 * 157.57567 * 7 2 1 10 10 C 1.47772 * 121.64819 * 148.40155 * 9 7 2 11 11 C 1.52991 * 108.81684 * 83.02890 * 10 9 7 12 12 N 1.47110 * 109.17336 * 57.75182 * 11 10 9 13 13 C 1.35515 * 118.10999 * 259.43126 * 12 11 10 14 14 O 1.21279 * 120.23576 * 359.90137 * 13 12 11 15 15 C 1.50698 * 119.52058 * 179.97438 * 13 12 11 16 16 C 1.53608 * 109.49597 * 245.65915 * 15 13 12 17 17 N 1.47745 * 108.47785 * 55.02247 * 16 15 13 18 18 C 1.34771 * 121.65469 * 87.79885 * 17 16 15 19 19 O 1.21277 * 120.00148 * 179.71739 * 18 17 16 20 20 C 1.50704 * 119.99868 * 359.71911 * 18 17 16 21 21 C 1.53005 * 109.46871 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.46858 * 179.97438 * 21 20 18 23 23 F 1.39901 * 109.47006 * 184.99989 * 22 21 20 24 24 F 1.39896 * 109.47085 * 65.00141 * 22 21 20 25 25 C 1.47777 * 116.69212 * 267.53263 * 17 16 15 26 26 C 1.47740 * 121.64530 * 328.42607 * 9 7 2 27 27 H 0.96999 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.57690 * 202.83152 * 10 9 7 29 29 H 1.09001 * 109.57487 * 323.09582 * 10 9 7 30 30 H 1.08998 * 109.51672 * 177.65883 * 11 10 9 31 31 H 1.08992 * 109.52247 * 297.84082 * 11 10 9 32 32 H 0.97003 * 120.94538 * 79.41474 * 12 11 10 33 33 H 1.08995 * 109.48092 * 5.71038 * 15 13 12 34 34 H 1.09002 * 109.47631 * 125.72234 * 15 13 12 35 35 H 1.08999 * 109.60420 * 295.40285 * 16 15 13 36 36 H 1.09002 * 109.87096 * 174.79815 * 16 15 13 37 37 H 1.09002 * 109.47087 * 59.99988 * 20 18 17 38 38 H 1.08996 * 109.47137 * 299.99456 * 20 18 17 39 39 H 1.09002 * 109.47047 * 60.00242 * 21 20 18 40 40 H 1.08999 * 109.47367 * 300.00490 * 21 20 18 41 41 H 1.09001 * 109.47120 * 305.00037 * 22 21 20 42 42 H 1.08994 * 109.58493 * 250.11045 * 25 17 16 43 43 H 1.09006 * 109.58116 * 10.38688 * 25 17 16 44 44 H 1.09004 * 109.57943 * 194.84928 * 26 9 7 45 45 H 1.09006 * 109.58126 * 74.45401 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4727 2.0609 -1.3997 5 1 1.4602 2.6454 0.7249 6 1 3.5600 1.4332 0.6749 7 6 2.0104 -1.2021 0.0005 8 1 1.5316 -2.1019 0.3577 9 7 3.3020 -1.2471 -0.4518 10 6 4.2863 -2.1977 0.1061 11 6 4.1126 -3.5510 -0.5861 12 7 4.2833 -3.3770 -2.0369 13 6 3.1705 -3.3112 -2.8074 14 8 2.0715 -3.3966 -2.3016 15 6 3.3085 -3.1327 -4.2974 16 6 2.7320 -1.7688 -4.7059 17 7 3.4024 -0.7198 -3.9104 18 6 4.5536 -0.1500 -4.3184 19 8 5.0757 0.7123 -3.6441 20 6 5.1921 -0.5844 -5.6125 21 6 6.4778 0.2133 -5.8398 22 6 7.1263 -0.2281 -7.1533 23 9 8.3580 0.4177 -7.3054 24 9 6.2889 0.1070 -8.2226 25 6 2.7450 -0.3219 -2.6481 26 6 3.7805 -0.3473 -1.5214 27 1 -0.4850 0.8400 -0.0004 28 1 5.2950 -1.8242 -0.0697 29 1 4.1196 -2.3092 1.1775 30 1 4.8610 -4.2498 -0.2125 31 1 3.1153 -3.9398 -0.3808 32 1 5.1673 -3.3110 -2.4307 33 1 4.3619 -3.1797 -4.5731 34 1 2.7630 -3.9248 -4.8103 35 1 1.6606 -1.7500 -4.5064 36 1 2.9112 -1.5935 -5.7667 37 1 4.5022 -0.4035 -6.4367 38 1 5.4278 -1.6474 -5.5625 39 1 7.1679 0.0328 -5.0156 40 1 6.2419 1.2763 -5.8898 41 1 7.2813 -1.3070 -7.1374 42 1 2.3392 0.6846 -2.7490 43 1 1.9391 -1.0196 -2.4203 44 1 4.7311 -0.7138 -1.9091 45 1 3.9103 0.6585 -1.1218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131369559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:15 Heat of formation + Delta-G solvation = -162.082643 kcal Electronic energy + Delta-G solvation = -31655.572452 eV Core-core repulsion = 27151.005330 eV Total energy + Delta-G solvation = -4504.567122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.81261 -47.84508 -41.42333 -40.12452 -37.96689 -36.87407 -35.36070 -34.75318 -33.62473 -31.96665 -31.28346 -28.96868 -27.69463 -26.09582 -25.06382 -24.17971 -22.76198 -21.99090 -21.17448 -19.99495 -18.85845 -18.46760 -18.42001 -18.06862 -17.94221 -17.44179 -17.07218 -16.67821 -16.55444 -16.20455 -15.86931 -15.83983 -15.13770 -14.88207 -14.74293 -14.65116 -14.36483 -14.25482 -14.19168 -14.14042 -13.90080 -13.68798 -13.38104 -13.29352 -13.17924 -12.88641 -12.66824 -12.42872 -12.40029 -12.28854 -12.04984 -12.01064 -11.86734 -11.73344 -11.53851 -10.82638 -10.65859 -10.49717 -9.92451 -9.70413 -8.69894 -8.16893 -5.44739 1.24318 1.31882 1.40396 1.64295 1.86293 2.04629 2.38326 2.64898 2.93840 3.05652 3.37852 3.41708 3.56516 3.67927 3.84292 3.92430 4.07306 4.18538 4.25080 4.28106 4.36590 4.39514 4.42370 4.54852 4.57613 4.62434 4.64882 4.77526 4.78873 4.88661 4.94722 4.98963 5.03524 5.05570 5.11907 5.31299 5.48695 5.79854 5.92275 6.21085 6.52572 6.88457 6.96545 7.19077 7.63662 7.72364 8.11243 9.04425 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.004445 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.966818 B = 6298.190505 C = 7060.486918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.012 4.012 3 Si 0.923 3.077 4 H -0.287 1.287 5 H -0.314 1.314 6 H -0.280 1.280 7 C -0.202 4.202 8 H 0.046 0.954 9 N -0.611 5.611 10 C 0.117 3.883 11 C 0.102 3.898 12 N -0.716 5.716 13 C 0.502 3.498 14 O -0.571 6.571 15 C -0.148 4.148 16 C 0.111 3.889 17 N -0.612 5.612 18 C 0.508 3.492 19 O -0.586 6.586 20 C -0.127 4.127 21 C -0.156 4.156 22 C 0.263 3.737 23 F -0.224 7.224 24 F -0.219 7.219 25 C 0.110 3.890 26 C 0.150 3.850 27 H 0.257 0.743 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.411 0.589 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.163 0.837 42 H 0.016 0.984 43 H 0.095 0.905 44 H 0.080 0.920 45 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.741 -9.781 -17.686 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.207 4.207 3 Si 0.756 3.244 4 H -0.215 1.215 5 H -0.243 1.243 6 H -0.207 1.207 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.336 5.336 10 C -0.008 4.008 11 C -0.025 4.025 12 N -0.369 5.369 13 C 0.289 3.711 14 O -0.448 6.448 15 C -0.188 4.188 16 C -0.011 4.011 17 N -0.345 5.345 18 C 0.298 3.702 19 O -0.466 6.466 20 C -0.166 4.166 21 C -0.194 4.194 22 C 0.210 3.790 23 F -0.205 7.205 24 F -0.200 7.200 25 C -0.013 4.013 26 C 0.025 3.975 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.247 0.753 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.179 0.821 42 H 0.035 0.965 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 16.124 -9.283 -16.989 25.195 hybrid contribution -0.082 1.810 0.603 1.909 sum 16.041 -7.474 -16.387 24.119 Atomic orbital electron populations 1.69983 1.06913 1.26414 1.55879 1.25596 0.95234 0.98978 1.00931 0.86340 0.78064 0.82911 0.77052 1.21515 1.24306 1.20652 1.18351 0.87291 0.92306 1.35300 0.93647 1.44895 1.07943 1.41652 1.39084 1.21823 0.91895 0.90347 0.96783 1.21928 1.01988 0.97499 0.81059 1.45986 1.08716 1.74799 1.07384 1.21379 0.84129 0.74893 0.90689 1.90813 1.27838 1.49910 1.76258 1.22345 1.06086 0.99503 0.90903 1.22205 0.97207 0.84374 0.97284 1.48964 1.23770 1.39642 1.22149 1.21319 0.79816 0.80757 0.88267 1.90729 1.63739 1.33578 1.58542 1.21695 0.96858 1.04054 0.93994 1.22370 0.98253 1.01891 0.96905 1.22332 0.73827 0.99206 0.83613 1.92962 1.45963 1.85341 1.96256 1.92969 1.72393 1.94738 1.59906 1.22178 0.96625 0.98726 0.83817 1.21361 0.96274 0.92019 0.87889 0.93330 0.91511 0.92809 0.87905 0.93199 0.75263 0.85934 0.85320 0.91552 0.84306 0.85979 0.83517 0.88030 0.91646 0.82051 0.96522 0.88656 0.90200 0.99324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.97 21.65 0.30 -60.70 16 2 C -0.01 -0.72 4.63 84.86 0.39 -0.33 16 3 Si 0.92 50.83 23.64 68.60 1.62 52.46 16 4 H -0.29 -15.88 5.77 99.48 0.57 -15.31 16 5 H -0.31 -17.46 7.11 99.48 0.71 -16.75 16 6 H -0.28 -15.27 6.97 99.48 0.69 -14.58 16 7 C -0.20 -11.57 8.70 84.03 0.73 -10.84 16 8 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 9 N -0.61 -28.47 1.96 -695.47 -1.36 -29.83 16 10 C 0.12 4.19 6.09 86.13 0.52 4.72 16 11 C 0.10 3.00 6.58 86.26 0.57 3.57 16 12 N -0.72 -17.58 4.70 -460.75 -2.16 -19.74 16 13 C 0.50 14.64 4.75 87.54 0.42 15.06 16 14 O -0.57 -24.55 15.09 -3.03 -0.05 -24.60 16 15 C -0.15 -2.35 6.20 30.05 0.19 -2.17 16 16 C 0.11 2.21 5.55 86.35 0.48 2.68 16 17 N -0.61 -17.81 2.42 -814.07 -1.97 -19.78 16 18 C 0.51 13.26 7.05 87.66 0.62 13.87 16 19 O -0.59 -21.42 14.35 -3.02 -0.04 -21.46 16 20 C -0.13 -1.51 4.30 29.85 0.13 -1.39 16 21 C -0.16 -2.22 4.73 30.60 0.14 -2.07 16 22 C 0.26 2.76 5.29 71.98 0.38 3.15 16 23 F -0.22 -3.80 17.34 44.97 0.78 -3.02 16 24 F -0.22 -3.24 17.02 44.97 0.77 -2.48 16 25 C 0.11 4.82 3.85 86.15 0.33 5.15 16 26 C 0.15 6.67 3.44 86.16 0.30 6.97 16 27 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.07 2.06 7.76 -2.39 -0.02 2.04 16 29 H 0.05 1.98 8.13 -2.39 -0.02 1.96 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.93 7.01 -2.39 -0.02 1.91 16 32 H 0.41 6.62 8.71 -92.71 -0.81 5.81 16 33 H 0.12 0.78 6.85 -2.39 -0.02 0.77 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 36 H 0.14 1.28 6.77 -2.39 -0.02 1.26 16 37 H 0.12 1.07 7.31 -2.39 -0.02 1.05 16 38 H 0.15 0.36 7.06 -2.39 -0.02 0.34 16 39 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 40 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 41 H 0.16 0.13 8.14 -2.39 -0.02 0.12 16 42 H 0.02 0.84 6.23 -2.39 -0.01 0.82 16 43 H 0.10 4.84 4.72 -2.38 -0.01 4.83 16 44 H 0.08 3.12 5.89 -2.38 -0.01 3.11 16 45 H -0.01 -0.55 4.10 -2.38 -0.01 -0.56 16 Total: -1.00 -90.85 346.82 3.17 -87.68 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 0.09 Total: 3.11 kcal Atomic # 6 Polarization: 33.17 SS G_CDS: 5.20 Total: 38.37 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -5.19 Total: -130.05 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.09 Total: -46.06 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 1.54 Total: -5.50 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.62 Total: 52.46 kcal Total: -90.85 3.17 -87.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131369559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.402 kcal (2) G-P(sol) polarization free energy of solvation -90.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds