Wall clock time and date at job start Tue Mar 31 2020 18:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.47162 * 2 1 4 4 F 1.39901 * 109.47257 * 240.00180 * 2 1 3 5 5 C 1.52993 * 109.47289 * 119.99906 * 2 1 3 6 6 C 1.50708 * 115.55084 * 56.95082 * 5 2 1 7 7 O 1.21276 * 119.99819 * 245.37626 * 6 5 2 8 8 N 1.34773 * 119.99961 * 65.63998 * 6 5 2 9 9 C 1.46496 * 120.00103 * 185.28037 * 8 6 5 10 10 C 1.53003 * 109.47250 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.46940 * 179.97438 * 10 9 8 12 12 N 1.46903 * 109.47046 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00413 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47409 * 179.97438 * 13 12 11 15 15 O 1.21295 * 120.00187 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00076 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00298 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99809 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00297 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00029 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99960 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47335 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46734 * 120.00312 * 21 19 17 24 24 H 1.48504 * 109.47189 * 240.00076 * 21 19 17 25 25 C 1.52998 * 117.50235 * 202.61838 * 5 2 1 26 26 C 1.52997 * 117.50144 * 271.28070 * 5 2 1 27 27 H 1.08998 * 109.47215 * 293.84741 * 1 2 3 28 28 H 1.09006 * 109.46971 * 53.84622 * 1 2 3 29 29 H 1.09002 * 109.47238 * 173.84310 * 1 2 3 30 30 H 0.97005 * 119.99855 * 5.28157 * 8 6 5 31 31 H 1.09008 * 109.46882 * 300.00307 * 9 8 6 32 32 H 1.08994 * 109.47457 * 59.99974 * 9 8 6 33 33 H 1.08999 * 109.46754 * 299.99412 * 10 9 8 34 34 H 1.08994 * 109.47283 * 59.99766 * 10 9 8 35 35 H 1.08998 * 109.47424 * 299.99131 * 11 10 9 36 36 H 1.08994 * 109.47306 * 59.99801 * 11 10 9 37 37 H 1.00899 * 110.99885 * 56.04114 * 12 11 10 38 38 H 1.08998 * 109.46865 * 300.00309 * 13 12 11 39 39 H 1.09001 * 109.46937 * 59.99885 * 13 12 11 40 40 H 0.97002 * 119.99945 * 359.97438 * 16 14 13 41 41 H 0.96994 * 120.00011 * 179.97438 * 20 19 17 42 42 H 1.09000 * 117.50012 * 215.00547 * 25 5 2 43 43 H 1.09003 * 117.49684 * 0.02575 * 25 5 2 44 44 H 1.08998 * 117.49810 * 359.97438 * 26 5 2 45 45 H 1.08999 * 117.49898 * 144.97420 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 1.5576 -2.1382 1.4242 7 8 0.8377 -2.4227 2.3577 8 7 1.9306 -3.0903 0.5462 9 6 1.3709 -4.4403 0.6480 10 6 1.9557 -5.3197 -0.4591 11 6 1.3716 -6.7297 -0.3524 12 7 1.9327 -7.5739 -1.4157 13 6 1.3937 -8.9386 -1.3441 14 6 1.9903 -9.7729 -2.4482 15 8 2.7858 -9.2792 -3.2193 16 7 1.6391 -11.0674 -2.5794 17 6 2.1822 -11.8266 -3.5835 18 1 2.8911 -11.3872 -4.2696 19 6 1.8205 -13.1614 -3.7185 20 7 0.9575 -13.6960 -2.8841 21 14 2.5600 -14.1956 -5.0872 22 1 3.4972 -13.3644 -5.8846 23 1 3.2955 -15.3433 -4.4980 24 1 1.4755 -14.7016 -5.9665 25 6 3.4566 -0.3934 1.7253 26 6 2.2469 0.1157 2.5131 27 1 -0.3633 0.4155 0.9399 28 1 -0.3633 0.6063 -0.8298 29 1 -0.3634 -1.0217 -0.1102 30 1 2.5697 -2.8816 -0.1531 31 1 1.6219 -4.8653 1.6199 32 1 0.2873 -4.3934 0.5409 33 1 1.7050 -4.8948 -1.4311 34 1 3.0393 -5.3666 -0.3516 35 1 1.6227 -7.1544 0.6195 36 1 0.2880 -6.6832 -0.4597 37 1 2.9409 -7.5811 -1.3776 38 1 1.6456 -9.3784 -0.3791 39 1 0.3101 -8.9077 -1.4575 40 1 1.0026 -11.4622 -1.9630 41 1 0.7047 -14.6277 -2.9785 42 1 4.0396 -1.2026 2.1651 43 1 4.0251 0.3364 1.1488 44 1 2.0201 1.1802 2.4546 45 1 2.0338 -0.3584 3.4712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166839034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:32 Heat of formation + Delta-G solvation = -155.450899 kcal Electronic energy + Delta-G solvation = -27806.129921 eV Core-core repulsion = 23301.850373 eV Total energy + Delta-G solvation = -4504.279548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.52796 -47.51992 -40.51807 -38.34611 -37.36636 -36.44889 -34.95144 -33.85640 -31.91899 -31.49576 -31.11708 -27.45010 -25.76890 -24.69131 -23.56499 -23.14528 -22.40701 -21.77935 -20.19302 -19.23537 -18.47404 -17.90689 -17.87446 -16.85365 -16.60305 -16.37631 -16.17044 -15.86364 -15.33383 -15.04371 -14.63940 -14.46382 -14.33710 -14.28870 -14.03768 -13.79360 -13.59887 -13.49832 -13.40092 -13.05409 -12.91591 -12.75014 -12.31533 -12.12887 -12.10325 -11.91068 -11.85156 -11.50149 -11.45214 -11.21678 -11.11769 -10.99482 -10.95347 -10.34977 -10.33722 -10.23036 -9.52875 -9.47141 -8.48651 -8.09190 -7.96927 -6.42546 -3.83405 1.93712 2.53540 2.83480 3.12779 3.15894 3.26509 3.33851 3.55144 3.69611 3.89742 3.95426 4.04350 4.12260 4.28286 4.32039 4.40189 4.76299 4.83714 4.93714 4.99379 5.00838 5.01843 5.13684 5.15335 5.24709 5.25199 5.35479 5.37838 5.44385 5.46563 5.57198 5.77037 5.90533 5.96171 5.98265 6.07548 6.25669 7.03889 7.17151 7.54751 7.62214 7.71824 8.05741 8.60339 9.17149 9.53478 10.04767 10.75263 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.001563 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.600318 B =17914.952451 C =18276.628686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.334 3.666 3 F -0.192 7.192 4 F -0.192 7.192 5 C -0.226 4.226 6 C 0.557 3.443 7 O -0.526 6.526 8 N -0.718 5.718 9 C 0.120 3.880 10 C -0.130 4.130 11 C 0.063 3.937 12 N -0.669 5.669 13 C 0.051 3.949 14 C 0.440 3.560 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.143 4.143 26 C -0.122 4.122 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.406 0.594 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.349 0.651 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 27.977 12.048 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.298 3.702 3 F -0.173 7.173 4 F -0.173 7.173 5 C -0.230 4.230 6 C 0.341 3.659 7 O -0.402 6.402 8 N -0.370 5.370 9 C -0.004 4.004 10 C -0.168 4.168 11 C -0.067 4.067 12 N -0.302 5.302 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.180 4.180 26 C -0.159 4.159 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.549 28.092 11.680 30.428 hybrid contribution 0.720 -1.128 -0.032 1.338 sum 0.171 26.964 11.648 29.373 Atomic orbital electron populations 1.22749 0.90530 1.05872 1.05792 1.20034 0.93848 0.74917 0.81416 1.93016 1.90613 1.37011 1.96648 1.93044 1.90580 1.80845 1.52794 1.22455 1.05736 0.96355 0.98468 1.18878 0.80303 0.84496 0.82232 1.90737 1.36748 1.81880 1.30802 1.45999 1.46702 1.11034 1.33253 1.21404 0.98635 0.80646 0.99692 1.21750 1.00965 0.95103 0.99004 1.21819 1.00162 0.91953 0.92788 1.60054 1.12941 1.10135 1.47054 1.21672 1.00523 0.88734 0.97286 1.19809 0.86482 0.83045 0.88084 1.90522 1.37940 1.71960 1.46368 1.41873 1.40416 1.08366 1.29394 1.19762 1.23328 0.91751 1.08032 0.87846 1.25273 0.96858 0.97268 0.98607 1.69619 1.32881 1.14548 1.37250 0.85792 0.78769 0.79384 0.80347 1.19211 1.20778 1.20729 1.23194 0.88763 1.03845 1.02220 1.23104 0.99383 0.99758 0.93677 0.88773 0.89399 0.89229 0.75822 0.91118 0.91018 0.89934 0.91151 0.95223 0.90752 0.83167 0.93805 0.89531 0.77443 0.91914 0.87153 0.86835 0.86819 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 9.05 37.16 0.34 -0.87 16 2 C 0.33 2.51 2.09 -26.73 -0.06 2.45 16 3 F -0.19 -1.52 15.64 2.25 0.04 -1.48 16 4 F -0.19 -1.67 16.20 2.25 0.04 -1.63 16 5 C -0.23 -1.66 1.75 -155.66 -0.27 -1.93 16 6 C 0.56 5.28 6.20 -10.98 -0.07 5.21 16 7 O -0.53 -6.68 16.70 5.56 0.09 -6.58 16 8 N -0.72 -5.98 5.41 -60.29 -0.33 -6.31 16 9 C 0.12 1.05 5.68 -4.04 -0.02 1.02 16 10 C -0.13 -1.20 5.59 -26.73 -0.15 -1.35 16 11 C 0.06 0.72 5.69 -3.82 -0.02 0.69 16 12 N -0.67 -10.49 6.13 -115.07 -0.70 -11.20 16 13 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 14 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 15 O -0.58 -15.88 15.78 5.54 0.09 -15.79 16 16 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 18 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 21 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.14 -0.81 9.69 -26.70 -0.26 -1.07 16 26 C -0.12 -0.72 9.48 -26.70 -0.25 -0.98 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.61 7.71 -51.93 -0.40 0.21 16 30 H 0.41 2.89 7.80 -40.82 -0.32 2.57 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.56 7.87 -51.93 -0.41 0.16 16 44 H 0.11 0.54 7.69 -51.93 -0.40 0.14 16 45 H 0.12 0.74 7.99 -51.93 -0.42 0.32 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -33.25 389.87 -7.14 -40.39 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.76 Total: 12.58 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.12 Total: 6.32 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.36 Total: -55.70 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.18 Total: -22.37 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.25 -7.14 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166839034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.065 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds