Wall clock time and date at job start Tue Mar 31 2020 18:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.47162 * 2 1 4 4 F 1.39901 * 109.47257 * 240.00180 * 2 1 3 5 5 C 1.52993 * 109.47289 * 119.99906 * 2 1 3 6 6 C 1.50708 * 115.55084 * 56.95082 * 5 2 1 7 7 O 1.21276 * 119.99819 * 245.37626 * 6 5 2 8 8 N 1.34773 * 119.99961 * 65.63998 * 6 5 2 9 9 C 1.46496 * 120.00103 * 185.28037 * 8 6 5 10 10 C 1.53003 * 109.47250 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.46940 * 179.97438 * 10 9 8 12 12 N 1.46903 * 109.47046 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00413 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47409 * 179.97438 * 13 12 11 15 15 O 1.21295 * 120.00187 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00076 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00298 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99809 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00297 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00029 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99960 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47335 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46734 * 120.00312 * 21 19 17 24 24 H 1.48504 * 109.47189 * 240.00076 * 21 19 17 25 25 C 1.52998 * 117.50235 * 202.61838 * 5 2 1 26 26 C 1.52997 * 117.50144 * 271.28070 * 5 2 1 27 27 H 1.08998 * 109.47215 * 293.84741 * 1 2 3 28 28 H 1.09006 * 109.46971 * 53.84622 * 1 2 3 29 29 H 1.09002 * 109.47238 * 173.84310 * 1 2 3 30 30 H 0.97005 * 119.99855 * 5.28157 * 8 6 5 31 31 H 1.09008 * 109.46882 * 300.00307 * 9 8 6 32 32 H 1.08994 * 109.47457 * 59.99974 * 9 8 6 33 33 H 1.08999 * 109.46754 * 299.99412 * 10 9 8 34 34 H 1.08994 * 109.47283 * 59.99766 * 10 9 8 35 35 H 1.08998 * 109.47424 * 299.99131 * 11 10 9 36 36 H 1.08994 * 109.47306 * 59.99801 * 11 10 9 37 37 H 1.00899 * 110.99885 * 56.04114 * 12 11 10 38 38 H 1.08998 * 109.46865 * 300.00309 * 13 12 11 39 39 H 1.09001 * 109.46937 * 59.99885 * 13 12 11 40 40 H 0.97002 * 119.99945 * 359.97438 * 16 14 13 41 41 H 0.96994 * 120.00011 * 179.97438 * 20 19 17 42 42 H 1.09000 * 117.50012 * 215.00547 * 25 5 2 43 43 H 1.09003 * 117.49684 * 0.02575 * 25 5 2 44 44 H 1.08998 * 117.49810 * 359.97438 * 26 5 2 45 45 H 1.08999 * 117.49898 * 144.97420 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 1.5576 -2.1382 1.4242 7 8 0.8377 -2.4227 2.3577 8 7 1.9306 -3.0903 0.5462 9 6 1.3709 -4.4403 0.6480 10 6 1.9557 -5.3197 -0.4591 11 6 1.3716 -6.7297 -0.3524 12 7 1.9327 -7.5739 -1.4157 13 6 1.3937 -8.9386 -1.3441 14 6 1.9903 -9.7729 -2.4482 15 8 2.7858 -9.2792 -3.2193 16 7 1.6391 -11.0674 -2.5794 17 6 2.1822 -11.8266 -3.5835 18 1 2.8911 -11.3872 -4.2696 19 6 1.8205 -13.1614 -3.7185 20 7 0.9575 -13.6960 -2.8841 21 14 2.5600 -14.1956 -5.0872 22 1 3.4972 -13.3644 -5.8846 23 1 3.2955 -15.3433 -4.4980 24 1 1.4755 -14.7016 -5.9665 25 6 3.4566 -0.3934 1.7253 26 6 2.2469 0.1157 2.5131 27 1 -0.3633 0.4155 0.9399 28 1 -0.3633 0.6063 -0.8298 29 1 -0.3634 -1.0217 -0.1102 30 1 2.5697 -2.8816 -0.1531 31 1 1.6219 -4.8653 1.6199 32 1 0.2873 -4.3934 0.5409 33 1 1.7050 -4.8948 -1.4311 34 1 3.0393 -5.3666 -0.3516 35 1 1.6227 -7.1544 0.6195 36 1 0.2880 -6.6832 -0.4597 37 1 2.9409 -7.5811 -1.3776 38 1 1.6456 -9.3784 -0.3791 39 1 0.3101 -8.9077 -1.4575 40 1 1.0026 -11.4622 -1.9630 41 1 0.7047 -14.6277 -2.9785 42 1 4.0396 -1.2026 2.1651 43 1 4.0251 0.3364 1.1488 44 1 2.0201 1.1802 2.4546 45 1 2.0338 -0.3584 3.4712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166839034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:31 Heat of formation + Delta-G solvation = -179.971276 kcal Electronic energy + Delta-G solvation = -27807.193204 eV Core-core repulsion = 23301.850373 eV Total energy + Delta-G solvation = -4505.342831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.13093 -48.13212 -41.22360 -40.16456 -38.06643 -37.39965 -36.14138 -35.66747 -33.30077 -32.54133 -32.22666 -28.75183 -26.92551 -25.86837 -24.66145 -23.65247 -23.16489 -22.60687 -21.13569 -20.79746 -19.90935 -19.10369 -18.49824 -17.88358 -17.43023 -17.26696 -17.03969 -16.95641 -16.60933 -16.29801 -15.97685 -15.62385 -15.46470 -15.12288 -15.01799 -14.85309 -14.61615 -14.42165 -14.25962 -14.07422 -13.57959 -13.56127 -13.38425 -13.28508 -13.19289 -12.90281 -12.85311 -12.72736 -12.57097 -12.44648 -12.40496 -12.11259 -11.88057 -11.73613 -11.51858 -11.50349 -11.09582 -10.36163 -10.21368 -10.02238 -9.33868 -8.47387 -5.96243 1.23771 1.36607 1.42030 1.56312 1.87821 2.04359 2.28975 2.31496 2.56171 2.92330 3.01335 3.13669 3.19943 3.45001 3.50836 3.53167 3.80761 3.86452 3.98284 4.11408 4.16741 4.32997 4.42184 4.48151 4.52761 4.54954 4.57610 4.58350 4.62257 4.67801 4.76074 4.82626 4.89441 5.03084 5.12482 5.17470 5.33241 5.40781 5.88043 6.09488 6.34564 6.41059 6.59326 7.01376 7.11987 7.55522 8.10644 8.70213 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.001563 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.600318 B =17914.952451 C =18276.628686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.333 3.667 3 F -0.193 7.193 4 F -0.201 7.201 5 C -0.237 4.237 6 C 0.558 3.442 7 O -0.562 6.562 8 N -0.712 5.712 9 C 0.126 3.874 10 C -0.117 4.117 11 C 0.064 3.936 12 N -0.685 5.685 13 C 0.064 3.936 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.133 4.133 26 C -0.117 4.117 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.413 0.587 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 28.571 12.551 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.297 3.703 3 F -0.174 7.174 4 F -0.182 7.182 5 C -0.241 4.241 6 C 0.343 3.657 7 O -0.440 6.440 8 N -0.363 5.363 9 C 0.002 3.998 10 C -0.155 4.155 11 C -0.065 4.065 12 N -0.317 5.317 13 C -0.068 4.068 14 C 0.224 3.776 15 O -0.510 6.510 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.170 4.170 26 C -0.154 4.154 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.250 0.750 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.550 28.694 12.193 31.182 hybrid contribution 0.720 -1.259 -0.166 1.460 sum 0.170 27.436 12.028 29.957 Atomic orbital electron populations 1.22771 0.89774 1.05671 1.06718 1.20136 0.94399 0.74722 0.81074 1.93010 1.90697 1.37085 1.96637 1.93026 1.90744 1.81039 1.53343 1.22377 1.07276 0.95290 0.99195 1.19164 0.79583 0.85307 0.81604 1.90717 1.38412 1.82608 1.32291 1.45974 1.46462 1.10794 1.33110 1.21288 0.98443 0.80764 0.99281 1.21598 1.01204 0.93914 0.98833 1.21899 1.00410 0.92158 0.92081 1.60055 1.12819 1.09436 1.49402 1.21535 1.00928 0.88842 0.95492 1.20909 0.85313 0.82734 0.88630 1.90489 1.39621 1.72664 1.48268 1.41947 1.40779 1.09098 1.29246 1.19715 1.24436 0.92955 1.09271 0.90297 1.26058 0.96916 0.97731 1.00647 1.69676 1.33159 1.15149 1.38135 0.84856 0.78127 0.77688 0.77566 1.19785 1.19561 1.19623 1.23302 0.88155 1.03964 1.01602 1.23182 0.99212 1.00208 0.92822 0.87981 0.88378 0.89992 0.75025 0.91308 0.91276 0.90469 0.90548 0.93856 0.90133 0.83638 0.91439 0.87770 0.76937 0.91287 0.86632 0.85878 0.85490 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 9.05 71.98 0.65 -1.58 16 2 C 0.33 4.61 2.09 30.59 0.06 4.68 16 3 F -0.19 -2.77 15.64 44.97 0.70 -2.06 16 4 F -0.20 -3.30 16.20 44.97 0.73 -2.57 16 5 C -0.24 -3.22 1.75 -52.93 -0.09 -3.31 16 6 C 0.56 10.16 6.20 87.66 0.54 10.70 16 7 O -0.56 -14.05 16.70 -3.02 -0.05 -14.10 16 8 N -0.71 -11.14 5.41 -463.06 -2.50 -13.65 16 9 C 0.13 2.05 5.68 86.38 0.49 2.54 16 10 C -0.12 -1.98 5.59 30.59 0.17 -1.81 16 11 C 0.06 1.32 5.69 86.30 0.49 1.81 16 12 N -0.68 -20.58 6.13 -517.96 -3.17 -23.75 16 13 C 0.06 2.16 6.17 85.56 0.53 2.69 16 14 C 0.44 20.72 7.82 87.66 0.69 21.41 16 15 O -0.62 -34.58 15.78 -3.07 -0.05 -34.63 16 16 N -0.57 -29.45 5.29 -306.99 -1.62 -31.07 16 17 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 20 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 21 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C -0.13 -1.29 9.69 30.62 0.30 -1.00 16 26 C -0.12 -1.23 9.48 30.62 0.29 -0.94 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 1.08 7.71 -2.39 -0.02 1.06 16 30 H 0.41 5.40 7.80 -92.70 -0.72 4.67 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.35 10.80 8.43 -89.69 -0.76 10.05 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 41 H 0.28 13.97 8.31 -92.71 -0.77 13.19 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.12 0.98 7.87 -2.39 -0.02 0.96 16 44 H 0.13 0.97 7.69 -2.39 -0.02 0.96 16 45 H 0.11 1.31 7.99 -2.39 -0.02 1.29 16 Total: -1.00 -71.53 389.87 0.57 -70.95 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -1.17 Total: 38.59 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 5.40 Total: 16.69 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -7.02 Total: -117.82 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.10 Total: -48.73 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 1.43 Total: -4.63 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -71.53 0.57 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166839034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.018 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds