Wall clock time and date at job start Tue Mar 31 2020 17:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99455 * 2 1 4 4 O 1.20819 * 120.00440 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99680 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47512 * 60.00312 * 5 3 2 7 7 N 1.46504 * 109.47335 * 180.02562 * 5 3 2 8 8 C 1.38856 * 119.99545 * 275.00033 * 7 5 3 9 9 C 1.39582 * 119.84491 * 359.97438 * 8 7 5 10 10 C 1.36322 * 120.16126 * 179.97438 * 9 8 7 11 11 C 1.40903 * 119.83778 * 0.02562 * 10 9 8 12 12 C 1.41140 * 120.15707 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00128 * 24.51988 * 12 11 10 14 14 C 1.39868 * 119.99700 * 204.52260 * 12 11 10 15 15 N 1.30909 * 120.00288 * 17.83678 * 14 12 11 16 16 Si 1.86797 * 119.99582 * 197.83677 * 14 12 11 17 17 H 1.48506 * 109.47218 * 59.99950 * 16 14 12 18 18 H 1.48502 * 109.47209 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47536 * 299.99966 * 16 14 12 20 20 C 1.40871 * 119.68717 * 359.77260 * 11 10 9 21 21 C 1.36356 * 119.83355 * 0.47598 * 20 11 10 22 22 C 1.50702 * 119.91663 * 179.77558 * 21 20 11 23 23 C 1.53002 * 109.47165 * 299.99890 * 5 3 2 24 24 C 1.53175 * 109.54572 * 179.55535 * 23 5 3 25 25 C 1.53090 * 109.16552 * 183.15539 * 24 23 5 26 26 O 1.42905 * 109.41454 * 57.61262 * 25 24 23 27 27 C 1.42901 * 114.09505 * 298.83891 * 26 25 24 28 28 C 1.53096 * 109.41504 * 61.15816 * 27 26 25 29 29 H 1.09003 * 109.46740 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47135 * 299.99675 * 1 2 3 31 31 H 1.09000 * 109.47335 * 60.00403 * 1 2 3 32 32 H 0.97000 * 120.00076 * 94.99399 * 7 5 3 33 33 H 1.07999 * 119.92140 * 0.02562 * 9 8 7 34 34 H 1.08005 * 120.08562 * 180.02562 * 10 9 8 35 35 H 0.96993 * 120.00368 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.08242 * 180.23217 * 20 11 10 37 37 H 1.09008 * 109.47126 * 269.72470 * 22 21 20 38 38 H 1.09003 * 109.47066 * 29.72660 * 22 21 20 39 39 H 1.08999 * 109.46947 * 149.72892 * 22 21 20 40 40 H 1.09001 * 109.54616 * 299.82688 * 23 5 3 41 41 H 1.09009 * 109.52308 * 303.06261 * 24 23 5 42 42 H 1.09000 * 109.52030 * 63.24584 * 24 23 5 43 43 H 1.08993 * 109.48203 * 297.62533 * 25 24 23 44 44 H 1.08999 * 109.47866 * 177.59357 * 25 24 23 45 45 H 1.09001 * 109.48222 * 301.17935 * 27 26 25 46 46 H 1.08998 * 109.48372 * 181.13996 * 27 26 25 47 47 H 1.09004 * 109.52266 * 182.48017 * 28 27 26 48 48 H 1.09003 * 109.51757 * 62.30068 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 7 3.9816 2.6799 0.0002 8 6 4.0774 3.3761 -1.1974 9 6 3.7777 2.7341 -2.4000 10 6 3.8691 3.4115 -3.5795 11 6 4.2678 4.7630 -3.5826 12 6 4.3641 5.4710 -4.7998 13 1 3.7855 5.1554 -5.6553 14 6 5.2091 6.5813 -4.8979 15 7 6.1562 6.7634 -4.0127 16 14 4.9860 7.8042 -6.2922 17 1 3.6251 8.3943 -6.2201 18 1 5.9996 8.8828 -6.1715 19 1 5.1555 7.1084 -7.5930 20 6 4.5646 5.4057 -2.3647 21 6 4.4737 4.7141 -1.1930 22 6 4.7957 5.3984 0.1105 23 6 4.1139 0.5812 1.2483 24 6 5.6440 0.6507 1.2439 25 6 6.1854 -0.1134 2.4549 26 8 5.7201 -1.4639 2.4112 27 6 4.2978 -1.5928 2.4607 28 6 3.6805 -0.8880 1.2498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.1896 3.1237 0.8372 33 1 3.4719 1.6983 -2.3961 34 1 3.6365 2.9136 -4.5093 35 1 6.7424 7.5331 -4.0810 36 1 4.8671 6.4424 -2.3593 37 1 5.8551 5.2732 0.3347 38 1 4.5643 6.4605 0.0302 39 1 4.2006 4.9563 0.9096 40 1 3.7276 1.0761 2.1394 41 1 6.0265 0.2000 0.3280 42 1 5.9614 1.6921 1.2985 43 1 5.8354 0.3622 3.3710 44 1 7.2751 -0.1035 2.4335 45 1 3.9230 -1.1365 3.3769 46 1 4.0276 -2.6486 2.4433 47 1 2.5937 -0.9473 1.3088 48 1 4.0233 -1.3699 0.3341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167395949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:30 Heat of formation + Delta-G solvation = -129.500407 kcal Electronic energy + Delta-G solvation = -29680.544735 eV Core-core repulsion = 25699.327264 eV Total energy + Delta-G solvation = -3981.217471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.89010 -40.22068 -39.87083 -37.72946 -36.98578 -35.59720 -33.95349 -33.24645 -31.99400 -30.68805 -29.52155 -27.93833 -27.59243 -25.98840 -24.85350 -24.32314 -22.82392 -21.79378 -21.42752 -20.90653 -18.91718 -18.70023 -18.22753 -17.80174 -17.30778 -17.09163 -16.81582 -16.64503 -16.43805 -15.71847 -15.50887 -14.92420 -14.83721 -14.73071 -14.53263 -14.33918 -14.21840 -14.08118 -13.65827 -13.56539 -13.22809 -13.18147 -13.03215 -13.01151 -12.88590 -12.72226 -12.53988 -12.20728 -12.20432 -12.01565 -11.84220 -11.66711 -11.55794 -11.42891 -11.20479 -11.15963 -11.03791 -10.49772 -10.35269 -9.22630 -8.57457 -8.22697 -6.04189 1.05563 1.13620 1.19898 1.38502 1.48689 1.52839 1.77112 2.25842 2.66429 2.82544 3.05074 3.47563 3.70842 3.79490 3.81926 3.98515 4.14558 4.18974 4.31588 4.33012 4.33222 4.36735 4.38760 4.43877 4.62068 4.63208 4.69837 4.72828 4.83395 4.87059 4.89620 4.92479 4.96776 5.05974 5.17843 5.20431 5.26700 5.32644 5.36405 5.40812 5.43345 5.68495 5.78654 5.88966 6.19507 6.34373 6.38797 6.56952 6.74556 6.84308 7.02034 7.06621 7.22416 8.46152 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.003132 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.153716 B = 8937.936002 C = 9875.795225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.352 6.352 3 C 0.437 3.563 4 O -0.528 6.528 5 C 0.180 3.820 6 H 0.107 0.893 7 N -0.718 5.718 8 C 0.114 3.886 9 C -0.162 4.162 10 C -0.208 4.208 11 C 0.043 3.957 12 C -0.508 4.508 13 H 0.064 0.936 14 C 0.036 3.964 15 N -0.835 5.835 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.262 1.262 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.087 4.087 23 C -0.079 4.079 24 C -0.142 4.142 25 C 0.063 3.937 26 O -0.403 6.403 27 C 0.062 3.938 28 C -0.152 4.152 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.402 0.598 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.283 0.717 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -14.402 14.905 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.278 3.722 4 O -0.416 6.416 5 C 0.070 3.930 6 H 0.125 0.875 7 N -0.353 5.353 8 C 0.016 3.984 9 C -0.184 4.184 10 C -0.228 4.228 11 C 0.041 3.959 12 C -0.539 4.539 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.463 5.463 16 Si 0.796 3.204 17 H -0.190 1.190 18 H -0.191 1.191 19 H -0.187 1.187 20 C -0.161 4.161 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.098 4.098 24 C -0.180 4.180 25 C -0.013 4.013 26 O -0.322 6.322 27 C -0.014 4.014 28 C -0.190 4.190 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.239 0.761 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.127 0.873 47 H 0.117 0.883 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.576 -14.256 14.881 20.916 hybrid contribution -0.588 1.360 -0.990 1.782 sum -4.164 -12.896 13.891 19.406 Atomic orbital electron populations 1.23500 0.75971 1.05574 1.01873 1.86600 1.24097 1.32429 1.83640 1.25502 0.93768 0.81426 0.71537 1.90669 1.67594 1.37808 1.45541 1.20500 0.84938 0.85111 1.02476 0.87512 1.43630 1.76522 1.09378 1.05806 1.17089 1.04091 0.91312 0.85909 1.19993 1.07965 0.98439 0.91974 1.20678 1.11013 0.94641 0.96477 1.17804 0.92840 0.91506 0.93789 1.19556 1.24172 1.12256 0.97964 0.91739 1.26567 0.92582 0.98998 0.99565 1.69896 1.13192 1.27427 1.35735 0.85377 0.78940 0.77633 0.78432 1.19037 1.19148 1.18693 1.20789 1.04732 0.99268 0.91354 1.19239 1.06030 0.93038 0.96043 1.20471 1.01118 0.99343 0.93451 1.21307 0.96642 0.96771 0.95060 1.22161 0.93597 1.02014 1.00231 1.22651 1.00182 0.81987 0.96521 1.87915 1.22549 1.26915 1.94802 1.22699 0.80068 1.02092 0.96531 1.22394 1.03030 0.93020 1.00516 0.84529 0.92086 0.93461 0.76100 0.87971 0.89147 0.90637 0.87962 0.91443 0.92873 0.91452 0.89595 0.91598 0.90267 0.91898 0.87921 0.92208 0.87270 0.88337 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.14 7.54 -51.41 -0.39 -8.53 16 3 C 0.44 12.96 7.08 71.24 0.50 13.47 16 4 O -0.53 -20.13 16.10 21.99 0.35 -19.78 16 5 C 0.18 4.85 1.79 44.25 0.08 4.93 16 6 H 0.11 3.04 6.45 -2.39 -0.02 3.02 16 7 N -0.72 -23.21 4.01 -322.08 -1.29 -24.50 16 8 C 0.11 4.88 6.53 38.67 0.25 5.13 16 9 C -0.16 -7.42 9.07 22.15 0.20 -7.22 16 10 C -0.21 -10.86 9.74 22.48 0.22 -10.65 16 11 C 0.04 2.47 5.57 -21.27 -0.12 2.35 16 12 C -0.51 -29.20 9.03 23.38 0.21 -28.99 16 13 H 0.06 3.62 7.91 -2.91 -0.02 3.60 16 14 C 0.04 1.89 5.13 85.23 0.44 2.33 16 15 N -0.83 -45.45 10.97 21.82 0.24 -45.21 16 16 Si 0.97 40.62 29.59 68.60 2.03 42.65 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 20 C -0.14 -7.66 8.26 22.48 0.19 -7.47 16 21 C -0.14 -6.44 5.86 -19.99 -0.12 -6.56 16 22 C -0.09 -3.13 9.56 71.24 0.68 -2.45 16 23 C -0.08 -1.52 1.90 -10.67 -0.02 -1.54 16 24 C -0.14 -2.71 5.22 30.68 0.16 -2.55 16 25 C 0.06 1.02 6.84 72.01 0.49 1.51 16 26 O -0.40 -7.64 10.77 -148.98 -1.60 -9.24 16 27 C 0.06 0.90 6.84 72.01 0.49 1.39 16 28 C -0.15 -2.50 4.77 30.69 0.15 -2.35 16 29 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.40 11.50 6.38 -92.71 -0.59 10.90 16 33 H 0.10 4.15 6.14 -2.91 -0.02 4.14 16 34 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 36 H 0.10 5.80 6.17 -2.91 -0.02 5.79 16 37 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 39 H 0.07 2.06 6.53 -2.39 -0.02 2.04 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.08 1.56 7.59 -2.39 -0.02 1.55 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.10 1.55 5.57 -2.38 -0.01 1.54 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -69.88 380.77 4.73 -65.15 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.38 Total: 36.47 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 5.00 Total: -37.01 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.05 Total: -69.71 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.64 Total: -37.54 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -69.88 4.73 -65.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167395949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.349 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds