Wall clock time and date at job start Tue Mar 31 2020 18:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.52399 * 2 1 4 4 C 1.53186 * 109.49725 * 239.91951 * 2 1 3 5 5 N 1.46928 * 108.77614 * 185.41550 * 4 2 1 6 6 C 1.36943 * 120.63167 * 233.58445 * 5 4 2 7 7 H 1.07992 * 120.00049 * 151.84144 * 6 5 4 8 8 C 1.38810 * 119.99664 * 331.84556 * 6 5 4 9 9 N 1.31617 * 120.00186 * 343.06631 * 8 6 5 10 10 Si 1.86800 * 119.99802 * 163.07686 * 8 6 5 11 11 H 1.48495 * 109.47503 * 59.99588 * 10 8 6 12 12 H 1.48503 * 109.47356 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46998 * 299.99309 * 10 8 6 14 14 C 1.46924 * 118.73905 * 53.60628 * 5 4 2 15 15 C 1.53193 * 108.77828 * 306.39186 * 14 5 4 16 16 C 1.53037 * 109.30894 * 54.63532 * 15 14 5 17 17 H 1.09004 * 109.46399 * 58.65734 * 16 15 14 18 18 N 1.46503 * 109.45877 * 178.63265 * 16 15 14 19 19 C 1.34775 * 119.99445 * 275.02504 * 18 16 15 20 20 O 1.21349 * 120.00759 * 359.97438 * 19 18 16 21 21 C 1.49457 * 119.99868 * 180.02562 * 19 18 16 22 22 O 1.21347 * 119.99814 * 359.97438 * 21 19 18 23 23 N 1.34772 * 120.00236 * 180.02562 * 21 19 18 24 24 C 1.46497 * 120.00099 * 179.97438 * 23 21 19 25 25 C 1.52999 * 109.47194 * 180.02562 * 24 23 21 26 26 F 1.39900 * 109.46983 * 299.99399 * 25 24 23 27 27 F 1.39902 * 109.47399 * 59.99521 * 25 24 23 28 28 H 1.09005 * 109.46810 * 299.91823 * 1 2 3 29 29 H 1.08995 * 109.46889 * 59.91726 * 1 2 3 30 30 H 1.08993 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47093 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47024 * 300.07855 * 3 2 1 33 33 H 1.08996 * 109.47149 * 60.08272 * 3 2 1 34 34 H 1.08994 * 109.58742 * 65.62604 * 4 2 1 35 35 H 1.09000 * 109.70372 * 305.26777 * 4 2 1 36 36 H 0.97005 * 119.99776 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.58596 * 186.60210 * 14 5 4 38 38 H 1.09002 * 109.70839 * 66.25347 * 14 5 4 39 39 H 1.09001 * 109.49405 * 294.68433 * 15 14 5 40 40 H 1.09001 * 109.52588 * 174.60208 * 15 14 5 41 41 H 0.96999 * 120.00258 * 95.03060 * 18 16 15 42 42 H 0.96999 * 119.99929 * 0.02562 * 23 21 19 43 43 H 1.09008 * 109.47228 * 299.99720 * 24 23 21 44 44 H 1.08992 * 109.47261 * 59.99550 * 24 23 21 45 45 H 1.09004 * 109.47144 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3794 -2.1945 7 1 5.2961 -0.0327 -1.9920 8 6 3.8047 -0.3690 -3.4936 9 7 2.7414 -1.0807 -3.8023 10 14 4.6560 0.6548 -4.8037 11 1 6.0613 0.1987 -4.9529 12 1 3.9442 0.4947 -6.0972 13 1 4.6395 2.0847 -4.4028 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2661 16 6 2.0409 -0.7231 1.2484 17 1 1.6967 -1.7573 1.2353 18 7 1.5266 -0.0526 2.4452 19 6 1.3977 -0.7379 3.5985 20 8 1.7072 -1.9103 3.6457 21 6 0.8726 -0.0541 4.8193 22 8 0.5626 1.1182 4.7721 23 7 0.7442 -0.7391 5.9728 24 6 0.2299 -0.0687 7.1696 25 6 0.1852 -1.0629 8.3316 26 9 -0.6541 -2.1316 7.9989 27 9 1.4745 -1.5436 8.5841 28 1 -0.3633 0.5126 0.8908 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1314 1.4410 -0.0005 32 1 1.6773 1.9566 -0.8893 33 1 1.6797 1.9558 0.8907 34 1 1.7638 -0.1579 -2.1388 35 1 1.6054 -1.7215 -1.3005 36 1 2.3996 -1.0731 -4.7100 37 1 5.1896 -1.3247 -0.0138 38 1 3.8398 -2.4823 0.0881 39 1 3.9160 0.3388 1.2541 40 1 3.9334 -1.1892 2.1674 41 1 1.2787 0.8844 2.4074 42 1 0.9930 -1.6759 6.0108 43 1 0.8841 0.7638 7.4291 44 1 -0.7744 0.3062 6.9728 45 1 -0.1979 -0.5642 9.2220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281558353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:05 Heat of formation + Delta-G solvation = -154.920627 kcal Electronic energy + Delta-G solvation = -29875.084873 eV Core-core repulsion = 25370.828320 eV Total energy + Delta-G solvation = -4504.256553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.50822 -47.49844 -40.81765 -39.30249 -37.90118 -35.66261 -34.57953 -32.87905 -32.02725 -30.32520 -29.51287 -26.78754 -26.16297 -25.79247 -24.42653 -23.01098 -21.92352 -20.66031 -20.45488 -19.32956 -18.08863 -17.92503 -17.81642 -16.92677 -16.76730 -16.42331 -16.03022 -15.54420 -15.09533 -14.86570 -14.64931 -14.27780 -14.12979 -13.92669 -13.85169 -13.67158 -13.39476 -13.27432 -13.10310 -12.98191 -12.69976 -12.33984 -11.83236 -11.69449 -11.65774 -11.48894 -11.34422 -11.09270 -10.88875 -10.70762 -10.59959 -10.26731 -10.13902 -10.01909 -9.81375 -9.76618 -9.67841 -9.42976 -8.84048 -8.47201 -6.69280 -5.81032 -3.23251 1.32618 2.12673 3.09364 3.15027 3.37291 3.43552 3.44491 3.48143 3.60816 3.97424 4.19964 4.42157 4.48015 4.89721 4.90692 5.12221 5.24583 5.37956 5.50375 5.55302 5.67317 5.80256 5.91643 6.02630 6.08669 6.12614 6.27269 6.35263 6.40169 6.43380 6.56392 6.65294 6.68973 6.78955 6.85453 6.94417 7.01714 7.28416 7.31475 7.58196 7.63920 7.78383 8.02781 8.42939 9.19027 9.82032 10.38868 11.27707 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.002459 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.697410 B =11382.513531 C =11602.092907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.129 4.129 4 C 0.187 3.813 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.148 3.852 15 C -0.144 4.144 16 C 0.160 3.840 17 H 0.086 0.914 18 N -0.684 5.684 19 C 0.503 3.497 20 O -0.521 6.521 21 C 0.513 3.487 22 O -0.518 6.518 23 N -0.705 5.705 24 C 0.068 3.932 25 C 0.255 3.745 26 F -0.199 7.199 27 F -0.199 7.199 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.094 0.906 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.408 0.592 42 H 0.419 0.581 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 3.223 22.271 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.186 4.186 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.021 3.979 15 C -0.184 4.184 16 C 0.057 3.943 17 H 0.104 0.896 18 N -0.336 5.336 19 C 0.282 3.718 20 O -0.397 6.397 21 C 0.294 3.706 22 O -0.393 6.393 23 N -0.361 5.361 24 C -0.057 4.057 25 C 0.201 3.799 26 F -0.180 7.180 27 F -0.180 7.180 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.245 0.755 42 H 0.256 0.744 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.302 3.169 22.060 23.452 hybrid contribution 0.350 0.400 -0.595 0.798 sum -6.952 3.569 21.465 22.843 Atomic orbital electron populations 1.21788 0.95245 1.01418 1.00961 1.21597 0.94617 0.96953 0.96768 1.21768 1.02652 0.94555 0.99664 1.20831 0.83115 0.96824 0.93230 1.44043 1.01635 1.69175 1.16230 1.19109 0.97959 1.35392 0.85666 0.91715 1.25028 0.98492 0.98926 0.96985 1.70008 1.25633 1.40091 1.18908 0.86397 0.78988 0.80509 0.81036 1.20915 1.21679 1.21031 1.20865 0.96752 0.94258 0.86036 1.22478 0.94242 1.01959 0.99735 1.21238 0.94244 0.96962 0.81864 0.89564 1.46221 1.62714 1.15280 1.09411 1.19838 0.80359 0.87045 0.84542 1.90780 1.49107 1.15437 1.84410 1.20450 0.78764 0.86742 0.84606 1.90764 1.48136 1.15584 1.84803 1.45505 1.65592 1.15987 1.08974 1.22617 1.03485 0.95661 0.83897 1.22233 0.74682 0.83810 0.99204 1.93044 1.71236 1.59658 1.94094 1.93045 1.39850 1.89821 1.95303 0.93738 0.92349 0.92972 0.91012 0.92716 0.94979 0.88782 0.96112 0.93542 0.92428 0.96141 0.91555 0.92645 0.75466 0.74378 0.87749 0.87741 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.31 37.16 0.31 -1.81 16 2 C -0.10 -1.71 0.56 -154.39 -0.09 -1.79 16 3 C -0.13 -2.19 7.83 37.16 0.29 -1.90 16 4 C 0.19 4.20 3.98 -3.71 -0.01 4.18 16 5 N -0.59 -14.04 2.43 -172.33 -0.42 -14.46 16 6 C -0.25 -6.63 9.58 -15.06 -0.14 -6.78 16 7 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 8 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 9 N -0.90 -25.43 11.20 55.49 0.62 -24.81 16 10 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 15 C -0.14 -2.53 5.31 -26.61 -0.14 -2.68 16 16 C 0.16 2.70 1.57 -67.89 -0.11 2.59 16 17 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 18 N -0.68 -9.98 4.28 -54.19 -0.23 -10.21 16 19 C 0.50 7.33 7.85 -11.58 -0.09 7.24 16 20 O -0.52 -8.74 16.14 5.50 0.09 -8.65 16 21 C 0.51 6.41 7.89 -11.58 -0.09 6.32 16 22 O -0.52 -7.17 16.48 5.50 0.09 -7.07 16 23 N -0.70 -6.84 5.41 -60.73 -0.33 -7.17 16 24 C 0.07 0.42 5.91 -4.04 -0.02 0.39 16 25 C 0.25 1.25 5.42 37.16 0.20 1.45 16 26 F -0.20 -1.51 17.20 2.25 0.04 -1.47 16 27 F -0.20 -1.51 17.20 2.25 0.04 -1.47 16 28 H 0.04 0.61 7.36 -51.93 -0.38 0.23 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.45 6.58 -51.93 -0.34 0.11 16 34 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 1.16 6.33 -51.93 -0.33 0.83 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.41 5.57 6.13 -40.82 -0.25 5.32 16 42 H 0.42 4.12 7.83 -40.82 -0.32 3.80 16 43 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -31.03 368.12 -6.00 -37.03 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.41 Total: 6.25 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -0.01 Total: 10.28 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.36 Total: -56.65 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.18 Total: -15.73 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.03 -6.00 -37.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281558353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.890 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds