Wall clock time and date at job start Tue Mar 31 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.52399 * 2 1 4 4 C 1.53186 * 109.49725 * 239.91951 * 2 1 3 5 5 N 1.46928 * 108.77614 * 185.41550 * 4 2 1 6 6 C 1.36943 * 120.63167 * 233.58445 * 5 4 2 7 7 H 1.07992 * 120.00049 * 151.84144 * 6 5 4 8 8 C 1.38810 * 119.99664 * 331.84556 * 6 5 4 9 9 N 1.31617 * 120.00186 * 343.06631 * 8 6 5 10 10 Si 1.86800 * 119.99802 * 163.07686 * 8 6 5 11 11 H 1.48495 * 109.47503 * 59.99588 * 10 8 6 12 12 H 1.48503 * 109.47356 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46998 * 299.99309 * 10 8 6 14 14 C 1.46924 * 118.73905 * 53.60628 * 5 4 2 15 15 C 1.53193 * 108.77828 * 306.39186 * 14 5 4 16 16 C 1.53037 * 109.30894 * 54.63532 * 15 14 5 17 17 H 1.09004 * 109.46399 * 58.65734 * 16 15 14 18 18 N 1.46503 * 109.45877 * 178.63265 * 16 15 14 19 19 C 1.34775 * 119.99445 * 275.02504 * 18 16 15 20 20 O 1.21349 * 120.00759 * 359.97438 * 19 18 16 21 21 C 1.49457 * 119.99868 * 180.02562 * 19 18 16 22 22 O 1.21347 * 119.99814 * 359.97438 * 21 19 18 23 23 N 1.34772 * 120.00236 * 180.02562 * 21 19 18 24 24 C 1.46497 * 120.00099 * 179.97438 * 23 21 19 25 25 C 1.52999 * 109.47194 * 180.02562 * 24 23 21 26 26 F 1.39900 * 109.46983 * 299.99399 * 25 24 23 27 27 F 1.39902 * 109.47399 * 59.99521 * 25 24 23 28 28 H 1.09005 * 109.46810 * 299.91823 * 1 2 3 29 29 H 1.08995 * 109.46889 * 59.91726 * 1 2 3 30 30 H 1.08993 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47093 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47024 * 300.07855 * 3 2 1 33 33 H 1.08996 * 109.47149 * 60.08272 * 3 2 1 34 34 H 1.08994 * 109.58742 * 65.62604 * 4 2 1 35 35 H 1.09000 * 109.70372 * 305.26777 * 4 2 1 36 36 H 0.97005 * 119.99776 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.58596 * 186.60210 * 14 5 4 38 38 H 1.09002 * 109.70839 * 66.25347 * 14 5 4 39 39 H 1.09001 * 109.49405 * 294.68433 * 15 14 5 40 40 H 1.09001 * 109.52588 * 174.60208 * 15 14 5 41 41 H 0.96999 * 120.00258 * 95.03060 * 18 16 15 42 42 H 0.96999 * 119.99929 * 0.02562 * 23 21 19 43 43 H 1.09008 * 109.47228 * 299.99720 * 24 23 21 44 44 H 1.08992 * 109.47261 * 59.99550 * 24 23 21 45 45 H 1.09004 * 109.47144 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3794 -2.1945 7 1 5.2961 -0.0327 -1.9920 8 6 3.8047 -0.3690 -3.4936 9 7 2.7414 -1.0807 -3.8023 10 14 4.6560 0.6548 -4.8037 11 1 6.0613 0.1987 -4.9529 12 1 3.9442 0.4947 -6.0972 13 1 4.6395 2.0847 -4.4028 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2661 16 6 2.0409 -0.7231 1.2484 17 1 1.6967 -1.7573 1.2353 18 7 1.5266 -0.0526 2.4452 19 6 1.3977 -0.7379 3.5985 20 8 1.7072 -1.9103 3.6457 21 6 0.8726 -0.0541 4.8193 22 8 0.5626 1.1182 4.7721 23 7 0.7442 -0.7391 5.9728 24 6 0.2299 -0.0687 7.1696 25 6 0.1852 -1.0629 8.3316 26 9 -0.6541 -2.1316 7.9989 27 9 1.4745 -1.5436 8.5841 28 1 -0.3633 0.5126 0.8908 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1314 1.4410 -0.0005 32 1 1.6773 1.9566 -0.8893 33 1 1.6797 1.9558 0.8907 34 1 1.7638 -0.1579 -2.1388 35 1 1.6054 -1.7215 -1.3005 36 1 2.3996 -1.0731 -4.7100 37 1 5.1896 -1.3247 -0.0138 38 1 3.8398 -2.4823 0.0881 39 1 3.9160 0.3388 1.2541 40 1 3.9334 -1.1892 2.1674 41 1 1.2787 0.8844 2.4074 42 1 0.9930 -1.6759 6.0108 43 1 0.8841 0.7638 7.4291 44 1 -0.7744 0.3062 6.9728 45 1 -0.1979 -0.5642 9.2220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281558353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:04 Heat of formation + Delta-G solvation = -176.247113 kcal Electronic energy + Delta-G solvation = -29876.009659 eV Core-core repulsion = 25370.828320 eV Total energy + Delta-G solvation = -4505.181339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.97177 -47.98215 -41.95551 -40.56582 -39.21163 -36.66373 -36.02746 -34.29217 -33.82480 -31.32182 -30.85008 -28.17213 -27.62136 -27.41779 -25.68927 -24.06778 -23.08116 -22.30491 -21.54763 -20.45357 -19.34860 -18.65928 -18.52409 -18.39446 -17.75591 -17.28302 -17.01818 -16.85715 -16.54747 -16.09610 -15.65358 -15.61787 -15.28279 -15.15119 -14.97359 -14.83198 -14.79934 -14.36656 -14.32462 -13.90976 -13.79892 -13.44947 -13.28258 -13.06306 -12.92076 -12.85974 -12.74205 -12.59862 -12.44171 -12.33396 -12.11743 -11.93472 -11.82845 -11.67916 -11.35995 -11.20349 -10.75514 -10.53201 -10.51322 -10.15864 -8.66267 -7.85173 -5.29967 0.26930 1.18680 1.49283 1.50763 1.57361 2.07271 2.48844 2.53131 2.69945 3.29497 3.30534 3.34342 3.56848 3.65334 3.69000 3.89435 3.93228 4.07857 4.31917 4.42577 4.46646 4.49541 4.54663 4.62959 4.77387 4.84452 4.91282 4.92200 4.94543 5.03584 5.08291 5.21093 5.28881 5.31127 5.39806 5.42848 5.61762 5.69688 5.72694 5.78962 6.24491 6.41616 6.60934 6.88822 7.17250 7.86846 8.39603 9.21419 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.002459 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.697410 B =11382.513531 C =11602.092907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.122 4.122 4 C 0.196 3.804 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.066 0.934 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.277 1.277 14 C 0.145 3.855 15 C -0.130 4.130 16 C 0.171 3.829 17 H 0.067 0.933 18 N -0.677 5.677 19 C 0.502 3.498 20 O -0.545 6.545 21 C 0.520 3.480 22 O -0.531 6.531 23 N -0.697 5.697 24 C 0.062 3.938 25 C 0.254 3.746 26 F -0.216 7.216 27 F -0.216 7.216 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.064 0.936 35 H -0.009 1.009 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.416 0.584 42 H 0.418 0.582 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 4.893 24.697 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.179 4.179 4 C 0.070 3.930 5 N -0.325 5.325 6 C -0.387 4.387 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.203 1.203 14 C 0.019 3.981 15 C -0.170 4.170 16 C 0.067 3.933 17 H 0.086 0.914 18 N -0.329 5.329 19 C 0.283 3.717 20 O -0.423 6.423 21 C 0.300 3.700 22 O -0.408 6.408 23 N -0.351 5.351 24 C -0.062 4.062 25 C 0.201 3.799 26 F -0.197 7.197 27 F -0.197 7.197 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.009 0.991 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.255 0.745 42 H 0.255 0.745 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.718 4.848 24.548 26.186 hybrid contribution 0.493 -0.200 -1.272 1.379 sum -7.225 4.648 23.276 24.811 Atomic orbital electron populations 1.21741 0.93393 1.01557 1.02186 1.21367 0.96027 0.96924 0.94663 1.21685 1.01442 0.93897 1.00914 1.20596 0.82599 0.95279 0.94563 1.44258 1.02077 1.69589 1.16626 1.19412 0.98254 1.34639 0.86440 0.91586 1.25722 0.99405 1.00156 0.98870 1.70166 1.27201 1.41715 1.18880 0.85420 0.77951 0.79244 0.78291 1.20429 1.22275 1.20285 1.20950 0.96946 0.93924 0.86292 1.22286 0.94665 1.01841 0.98225 1.20861 0.93724 0.96089 0.82619 0.91438 1.45966 1.62696 1.15492 1.08781 1.20271 0.79604 0.86731 0.85113 1.90774 1.50048 1.16616 1.84887 1.19896 0.79089 0.86438 0.84536 1.90766 1.49221 1.15828 1.84942 1.45589 1.64326 1.15940 1.09269 1.22975 1.04351 0.96196 0.82642 1.22736 0.73757 0.82982 1.00462 1.93012 1.71683 1.60682 1.94359 1.93012 1.41249 1.90073 1.95390 0.91209 0.92349 0.93460 0.92768 0.93522 0.91634 0.91783 0.99110 0.94133 0.92222 0.97273 0.90870 0.91700 0.74500 0.74505 0.86372 0.86350 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.31 71.98 0.60 -3.35 16 2 C -0.09 -3.06 0.56 -52.10 -0.03 -3.09 16 3 C -0.12 -3.97 7.83 71.98 0.56 -3.41 16 4 C 0.20 9.11 3.98 86.36 0.34 9.45 16 5 N -0.60 -29.40 2.43 -699.11 -1.70 -31.10 16 6 C -0.26 -13.77 9.58 84.03 0.81 -12.96 16 7 H 0.07 3.45 7.88 -2.91 -0.02 3.43 16 8 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 9 N -0.93 -54.32 11.20 21.65 0.24 -54.08 16 10 Si 0.96 44.20 29.59 68.60 2.03 46.23 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 14 C 0.15 6.07 6.52 86.36 0.56 6.64 16 15 C -0.13 -4.49 5.31 30.67 0.16 -4.33 16 16 C 0.17 5.67 1.57 45.02 0.07 5.74 16 17 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 18 N -0.68 -18.50 4.28 -443.72 -1.90 -20.40 16 19 C 0.50 13.84 7.85 87.27 0.69 14.53 16 20 O -0.55 -17.83 16.14 -3.24 -0.05 -17.88 16 21 C 0.52 11.85 7.89 87.27 0.69 12.54 16 22 O -0.53 -13.24 16.48 -3.24 -0.05 -13.29 16 23 N -0.70 -12.05 5.41 -464.42 -2.51 -14.56 16 24 C 0.06 0.57 5.91 86.38 0.51 1.08 16 25 C 0.25 1.76 5.42 71.98 0.39 2.15 16 26 F -0.22 -2.83 17.20 44.97 0.77 -2.06 16 27 F -0.22 -2.83 17.20 44.97 0.77 -2.06 16 28 H 0.07 1.76 7.36 -2.38 -0.02 1.74 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.96 5.97 -2.38 -0.01 1.95 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.68 6.58 -2.39 -0.02 1.67 16 34 H 0.06 3.37 6.06 -2.39 -0.01 3.35 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 37 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 2.45 6.33 -2.39 -0.02 2.44 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.42 10.18 6.13 -92.71 -0.57 9.61 16 42 H 0.42 7.58 7.83 -92.71 -0.73 6.86 16 43 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.18 -0.50 8.14 -2.38 -0.02 -0.52 16 Total: -1.00 -68.59 368.12 3.12 -65.48 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.26 Total: 20.82 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 5.77 Total: 22.89 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.87 Total: -120.14 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.11 Total: -31.17 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.55 Total: -4.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.59 3.12 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281558353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.772 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds