Wall clock time and date at job start Tue Mar 31 2020 18:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.52811 * 2 1 4 4 C 1.53632 * 109.63422 * 239.91817 * 2 1 3 5 5 N 1.46924 * 108.54160 * 294.86603 * 4 2 1 6 6 C 1.36939 * 120.63291 * 126.36471 * 5 4 2 7 7 H 1.07995 * 120.00585 * 204.92419 * 6 5 4 8 8 C 1.38811 * 119.99469 * 24.92277 * 6 5 4 9 9 N 1.31627 * 119.99946 * 202.59569 * 8 6 5 10 10 Si 1.86797 * 120.00421 * 22.59592 * 8 6 5 11 11 H 1.48498 * 109.47288 * 264.61541 * 10 8 6 12 12 H 1.48497 * 109.47014 * 24.61392 * 10 8 6 13 13 H 1.48495 * 109.47369 * 144.61319 * 10 8 6 14 14 C 1.46924 * 118.73873 * 306.09351 * 5 4 2 15 15 C 1.53194 * 108.77727 * 53.86107 * 14 5 4 16 16 C 1.53037 * 109.50060 * 120.08441 * 2 1 3 17 17 H 1.08994 * 109.46542 * 178.60571 * 16 2 1 18 18 N 1.46503 * 109.45842 * 298.56432 * 16 2 1 19 19 C 1.34782 * 120.00003 * 205.06599 * 18 16 2 20 20 O 1.21349 * 119.99619 * 359.97438 * 19 18 16 21 21 C 1.49445 * 120.00032 * 180.02562 * 19 18 16 22 22 O 1.21354 * 119.99994 * 359.97438 * 21 19 18 23 23 N 1.34773 * 120.00029 * 180.02562 * 21 19 18 24 24 C 1.46503 * 120.00001 * 179.97438 * 23 21 19 25 25 C 1.53002 * 109.47311 * 179.97438 * 24 23 21 26 26 F 1.39898 * 109.46690 * 300.00175 * 25 24 23 27 27 F 1.39903 * 109.46930 * 59.99692 * 25 24 23 28 28 H 1.09007 * 109.47000 * 299.91717 * 1 2 3 29 29 H 1.09001 * 109.47233 * 59.91166 * 1 2 3 30 30 H 1.09000 * 109.47353 * 179.91642 * 1 2 3 31 31 H 1.08997 * 109.47381 * 180.08250 * 3 2 1 32 32 H 1.09003 * 109.47327 * 300.08767 * 3 2 1 33 33 H 1.09006 * 109.46893 * 60.08085 * 3 2 1 34 34 H 1.08999 * 109.73914 * 175.12979 * 4 2 1 35 35 H 1.09000 * 109.66367 * 54.55473 * 4 2 1 36 36 H 0.97003 * 119.99683 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58662 * 173.64718 * 14 5 4 38 38 H 1.08999 * 109.58703 * 293.93073 * 14 5 4 39 39 H 1.09003 * 109.49813 * 65.31425 * 15 14 5 40 40 H 1.09000 * 109.49608 * 185.38152 * 15 14 5 41 41 H 0.97001 * 120.00290 * 25.06925 * 18 16 2 42 42 H 0.96996 * 120.00366 * 359.97438 * 23 21 19 43 43 H 1.09003 * 109.47200 * 299.99699 * 24 23 21 44 44 H 1.08999 * 109.47329 * 59.99353 * 24 23 21 45 45 H 1.08992 * 109.47021 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0462 -0.7253 -1.2521 5 7 1.6515 -2.1381 -1.1697 6 6 0.9638 -2.7314 -2.1946 7 1 0.3392 -3.5906 -1.9997 8 6 1.0695 -2.2282 -3.4839 9 7 0.1224 -2.4716 -4.3650 10 14 2.5557 -1.2058 -3.9688 11 1 2.2338 0.2364 -3.8214 12 1 3.7014 -1.5497 -3.0889 13 1 2.9134 -1.4913 -5.3814 14 6 2.0139 -2.9040 0.0306 15 6 1.5029 -2.1558 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 3.1305 -0.7445 1.2352 18 7 1.5811 -0.0145 2.4453 19 6 2.2706 -0.1218 3.5984 20 8 3.2719 -0.8058 3.6451 21 6 1.8014 0.6006 4.8196 22 8 0.7998 1.2843 4.7728 23 7 2.4911 0.4937 5.9725 24 6 2.0315 1.2024 7.1695 25 6 2.9848 0.9137 8.3308 26 9 3.0085 -0.4621 8.5836 27 9 4.2719 1.3486 7.9967 28 1 -0.3633 0.5126 0.8908 29 1 -0.3634 0.5152 -0.8892 30 1 -0.3634 -1.0277 -0.0015 31 1 3.1314 1.4410 -0.0015 32 1 1.6773 1.9567 -0.8892 33 1 1.6797 1.9558 0.8908 34 1 3.1327 -0.6515 -1.2986 35 1 1.6088 -0.2751 -2.1432 36 1 0.1961 -2.1197 -5.2660 37 1 1.5553 -3.8918 -0.0139 38 1 3.0977 -3.0065 0.0852 39 1 0.4132 -2.1355 1.2540 40 1 1.8475 -2.6633 2.1669 41 1 0.7805 0.5319 2.4080 42 1 3.2919 -0.0523 6.0098 43 1 2.0126 2.2743 6.9724 44 1 1.0288 0.8633 7.4300 45 1 2.6425 1.4405 9.2214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281558354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:10 Heat of formation + Delta-G solvation = -147.850156 kcal Electronic energy + Delta-G solvation = -29989.860073 eV Core-core repulsion = 25485.910118 eV Total energy + Delta-G solvation = -4503.949955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.54840 -47.53817 -40.92443 -39.48649 -38.08898 -35.74888 -34.76543 -33.06363 -32.09277 -30.42923 -30.14902 -26.94740 -26.47849 -25.90476 -24.44625 -23.12527 -22.25920 -20.68290 -20.54566 -19.44694 -18.26633 -18.11367 -17.96550 -16.99705 -16.86670 -16.49571 -16.10821 -15.72509 -15.27646 -14.95256 -14.71367 -14.41527 -14.33930 -14.17066 -13.89118 -13.78152 -13.68845 -13.44424 -13.14549 -13.02493 -12.78653 -12.48630 -12.10171 -11.89608 -11.78318 -11.74652 -11.70092 -11.26945 -11.16326 -10.80329 -10.71075 -10.48887 -10.22885 -9.95122 -9.88453 -9.82420 -9.66432 -9.44780 -8.97308 -8.64235 -7.03688 -5.96970 -3.30074 1.24225 2.04393 3.05072 3.06047 3.29874 3.38157 3.48198 3.50142 3.56807 3.93305 4.15496 4.32339 4.50893 4.85030 4.86443 4.87014 4.89380 5.19059 5.20910 5.39967 5.61129 5.61809 5.68676 5.78002 5.91349 5.94603 6.02972 6.14823 6.23527 6.26438 6.36284 6.42381 6.51821 6.54870 6.59743 6.64851 6.68385 6.78612 6.98794 7.22329 7.51781 7.90922 7.91841 8.30007 8.90953 9.69990 10.06204 11.18692 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.002612 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.981765 B =10716.328051 C =10864.318904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.142 4.142 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.087 0.913 8 C 0.024 3.976 9 N -0.905 5.905 10 Si 0.874 3.126 11 H -0.289 1.289 12 H -0.269 1.269 13 H -0.303 1.303 14 C 0.151 3.849 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.088 0.912 18 N -0.685 5.685 19 C 0.504 3.496 20 O -0.520 6.520 21 C 0.513 3.487 22 O -0.517 6.517 23 N -0.704 5.704 24 C 0.068 3.932 25 C 0.255 3.745 26 F -0.199 7.199 27 F -0.199 7.199 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.410 0.590 42 H 0.419 0.581 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 9.699 24.395 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.200 4.200 4 C 0.015 3.985 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.105 0.895 8 C -0.175 4.175 9 N -0.548 5.548 10 Si 0.705 3.295 11 H -0.217 1.217 12 H -0.194 1.194 13 H -0.232 1.232 14 C 0.025 3.975 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.106 0.894 18 N -0.337 5.337 19 C 0.284 3.716 20 O -0.396 6.396 21 C 0.294 3.706 22 O -0.391 6.391 23 N -0.360 5.360 24 C -0.057 4.057 25 C 0.201 3.799 26 F -0.180 7.180 27 F -0.180 7.180 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.247 0.753 42 H 0.256 0.744 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.586 9.654 24.192 26.293 hybrid contribution 0.909 0.628 -0.331 1.154 sum 4.495 10.282 23.860 26.368 Atomic orbital electron populations 1.21784 0.93576 1.03390 1.00151 1.21470 0.97244 0.94776 0.95693 1.21861 1.00835 0.95735 1.01580 1.21489 0.96741 0.85152 0.95161 1.44392 1.65614 1.04839 1.17692 1.18905 1.19884 1.14188 0.85555 0.89499 1.25210 0.97737 0.98740 0.95803 1.69859 1.31602 1.47888 1.05461 0.87069 0.85963 0.79425 0.77053 1.21672 1.19434 1.23166 1.20885 0.96929 0.94634 0.85087 1.22478 1.01826 0.94587 0.99683 1.21183 0.99627 0.91683 0.81839 0.89434 1.46155 1.29248 1.48989 1.09332 1.19845 0.84595 0.82654 0.84524 1.90781 1.24853 1.39581 1.84417 1.20392 0.83718 0.81878 0.84576 1.90775 1.24492 1.39105 1.84772 1.45501 1.30803 1.50697 1.09016 1.22629 0.98913 1.00276 0.83856 1.22233 0.80528 0.77967 0.99202 1.93045 1.96580 1.33083 1.95296 1.93044 1.41692 1.89248 1.94060 0.94448 0.92420 0.90456 0.92876 0.92237 0.92997 0.95386 0.90335 0.92797 0.91422 0.95630 0.91030 0.92139 0.75302 0.74382 0.87713 0.87682 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.84 37.16 0.29 -1.87 16 2 C -0.09 -1.48 0.56 -154.16 -0.09 -1.57 16 3 C -0.14 -2.05 8.31 37.16 0.31 -1.74 16 4 C 0.14 2.94 2.93 -3.48 -0.01 2.93 16 5 N -0.60 -13.63 2.23 -172.05 -0.38 -14.01 16 6 C -0.26 -6.90 10.05 -15.06 -0.15 -7.06 16 7 H 0.09 2.50 8.04 -52.49 -0.42 2.07 16 8 C 0.02 0.67 5.21 -17.43 -0.09 0.58 16 9 N -0.91 -27.15 13.97 55.49 0.78 -26.37 16 10 Si 0.87 21.87 24.36 -169.99 -4.14 17.73 16 11 H -0.29 -6.95 6.68 56.52 0.38 -6.57 16 12 H -0.27 -6.63 6.54 56.52 0.37 -6.27 16 13 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 14 C 0.15 2.90 6.51 -3.71 -0.02 2.88 16 15 C -0.15 -2.39 5.31 -26.61 -0.14 -2.53 16 16 C 0.16 2.50 1.57 -67.89 -0.11 2.40 16 17 H 0.09 1.48 7.57 -51.93 -0.39 1.09 16 18 N -0.68 -9.29 4.28 -54.20 -0.23 -9.52 16 19 C 0.50 6.87 7.85 -11.59 -0.09 6.78 16 20 O -0.52 -8.18 16.14 5.50 0.09 -8.10 16 21 C 0.51 6.04 7.89 -11.59 -0.09 5.95 16 22 O -0.52 -6.81 16.48 5.49 0.09 -6.72 16 23 N -0.70 -6.42 5.41 -60.73 -0.33 -6.75 16 24 C 0.07 0.38 5.91 -4.04 -0.02 0.36 16 25 C 0.25 1.15 5.42 37.16 0.20 1.35 16 26 F -0.20 -1.43 17.20 2.25 0.04 -1.40 16 27 F -0.20 -1.43 17.20 2.25 0.04 -1.39 16 28 H 0.04 0.51 6.58 -51.92 -0.34 0.16 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.43 5.97 -51.93 -0.31 1.12 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.66 7.36 -51.93 -0.38 0.27 16 34 H 0.03 0.59 7.09 -51.93 -0.37 0.23 16 35 H 0.08 1.81 4.36 -51.93 -0.23 1.58 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.41 5.19 6.13 -40.82 -0.25 4.94 16 42 H 0.42 3.86 7.83 -40.82 -0.32 3.54 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -32.27 361.59 -4.95 -37.22 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.33 Total: 5.40 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.02 Total: 8.47 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.17 Total: -56.65 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.18 Total: -14.82 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.27 -4.95 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281558354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.634 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds