Wall clock time and date at job start Tue Mar 31 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.52811 * 2 1 4 4 C 1.53632 * 109.63422 * 239.91817 * 2 1 3 5 5 N 1.46924 * 108.54160 * 294.86603 * 4 2 1 6 6 C 1.36939 * 120.63291 * 126.36471 * 5 4 2 7 7 H 1.07995 * 120.00585 * 204.92419 * 6 5 4 8 8 C 1.38811 * 119.99469 * 24.92277 * 6 5 4 9 9 N 1.31627 * 119.99946 * 202.59569 * 8 6 5 10 10 Si 1.86797 * 120.00421 * 22.59592 * 8 6 5 11 11 H 1.48498 * 109.47288 * 264.61541 * 10 8 6 12 12 H 1.48497 * 109.47014 * 24.61392 * 10 8 6 13 13 H 1.48495 * 109.47369 * 144.61319 * 10 8 6 14 14 C 1.46924 * 118.73873 * 306.09351 * 5 4 2 15 15 C 1.53194 * 108.77727 * 53.86107 * 14 5 4 16 16 C 1.53037 * 109.50060 * 120.08441 * 2 1 3 17 17 H 1.08994 * 109.46542 * 178.60571 * 16 2 1 18 18 N 1.46503 * 109.45842 * 298.56432 * 16 2 1 19 19 C 1.34782 * 120.00003 * 205.06599 * 18 16 2 20 20 O 1.21349 * 119.99619 * 359.97438 * 19 18 16 21 21 C 1.49445 * 120.00032 * 180.02562 * 19 18 16 22 22 O 1.21354 * 119.99994 * 359.97438 * 21 19 18 23 23 N 1.34773 * 120.00029 * 180.02562 * 21 19 18 24 24 C 1.46503 * 120.00001 * 179.97438 * 23 21 19 25 25 C 1.53002 * 109.47311 * 179.97438 * 24 23 21 26 26 F 1.39898 * 109.46690 * 300.00175 * 25 24 23 27 27 F 1.39903 * 109.46930 * 59.99692 * 25 24 23 28 28 H 1.09007 * 109.47000 * 299.91717 * 1 2 3 29 29 H 1.09001 * 109.47233 * 59.91166 * 1 2 3 30 30 H 1.09000 * 109.47353 * 179.91642 * 1 2 3 31 31 H 1.08997 * 109.47381 * 180.08250 * 3 2 1 32 32 H 1.09003 * 109.47327 * 300.08767 * 3 2 1 33 33 H 1.09006 * 109.46893 * 60.08085 * 3 2 1 34 34 H 1.08999 * 109.73914 * 175.12979 * 4 2 1 35 35 H 1.09000 * 109.66367 * 54.55473 * 4 2 1 36 36 H 0.97003 * 119.99683 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58662 * 173.64718 * 14 5 4 38 38 H 1.08999 * 109.58703 * 293.93073 * 14 5 4 39 39 H 1.09003 * 109.49813 * 65.31425 * 15 14 5 40 40 H 1.09000 * 109.49608 * 185.38152 * 15 14 5 41 41 H 0.97001 * 120.00290 * 25.06925 * 18 16 2 42 42 H 0.96996 * 120.00366 * 359.97438 * 23 21 19 43 43 H 1.09003 * 109.47200 * 299.99699 * 24 23 21 44 44 H 1.08999 * 109.47329 * 59.99353 * 24 23 21 45 45 H 1.08992 * 109.47021 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0462 -0.7253 -1.2521 5 7 1.6515 -2.1381 -1.1697 6 6 0.9638 -2.7314 -2.1946 7 1 0.3392 -3.5906 -1.9997 8 6 1.0695 -2.2282 -3.4839 9 7 0.1224 -2.4716 -4.3650 10 14 2.5557 -1.2058 -3.9688 11 1 2.2338 0.2364 -3.8214 12 1 3.7014 -1.5497 -3.0889 13 1 2.9134 -1.4913 -5.3814 14 6 2.0139 -2.9040 0.0306 15 6 1.5029 -2.1558 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 3.1305 -0.7445 1.2352 18 7 1.5811 -0.0145 2.4453 19 6 2.2706 -0.1218 3.5984 20 8 3.2719 -0.8058 3.6451 21 6 1.8014 0.6006 4.8196 22 8 0.7998 1.2843 4.7728 23 7 2.4911 0.4937 5.9725 24 6 2.0315 1.2024 7.1695 25 6 2.9848 0.9137 8.3308 26 9 3.0085 -0.4621 8.5836 27 9 4.2719 1.3486 7.9967 28 1 -0.3633 0.5126 0.8908 29 1 -0.3634 0.5152 -0.8892 30 1 -0.3634 -1.0277 -0.0015 31 1 3.1314 1.4410 -0.0015 32 1 1.6773 1.9567 -0.8892 33 1 1.6797 1.9558 0.8908 34 1 3.1327 -0.6515 -1.2986 35 1 1.6088 -0.2751 -2.1432 36 1 0.1961 -2.1197 -5.2660 37 1 1.5553 -3.8918 -0.0139 38 1 3.0977 -3.0065 0.0852 39 1 0.4132 -2.1355 1.2540 40 1 1.8475 -2.6633 2.1669 41 1 0.7805 0.5319 2.4080 42 1 3.2919 -0.0523 6.0098 43 1 2.0126 2.2743 6.9724 44 1 1.0288 0.8633 7.4300 45 1 2.6425 1.4405 9.2214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281558354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:09 Heat of formation + Delta-G solvation = -171.727904 kcal Electronic energy + Delta-G solvation = -29990.895490 eV Core-core repulsion = 25485.910118 eV Total energy + Delta-G solvation = -4504.985372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.97677 -47.98639 -41.99159 -40.68142 -39.28893 -36.74449 -36.08457 -34.39298 -33.94538 -31.90029 -30.89677 -28.26248 -27.81416 -27.42749 -25.69405 -24.27572 -23.21678 -22.20583 -21.60263 -20.52109 -19.67165 -18.69157 -18.58288 -18.39906 -17.80460 -17.31308 -17.12692 -17.02583 -16.51231 -16.11007 -16.07281 -15.62581 -15.38115 -15.19003 -15.01918 -14.89872 -14.76230 -14.46595 -14.35479 -14.24123 -13.89072 -13.72418 -13.45362 -13.23801 -13.04995 -12.95024 -12.84733 -12.65650 -12.42230 -12.29451 -12.12188 -12.07450 -11.86721 -11.55612 -11.47859 -11.21477 -10.85941 -10.63139 -10.53372 -10.20101 -8.96404 -8.14113 -5.42671 0.26301 1.17261 1.29268 1.42575 1.49926 2.06606 2.42328 2.46857 2.69243 3.04653 3.28921 3.30236 3.37709 3.55845 3.56374 3.82740 3.88924 3.89884 4.24567 4.26255 4.43080 4.46385 4.49049 4.53964 4.63356 4.71553 4.79466 4.83299 4.88908 4.91503 4.99177 5.02588 5.05914 5.16041 5.25610 5.31213 5.33830 5.59632 5.76051 5.87244 6.14362 6.23146 6.59825 6.87066 6.91555 7.63783 8.03306 9.05405 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.002612 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.981765 B =10716.328051 C =10864.318904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.139 4.139 4 C 0.136 3.864 5 N -0.613 5.613 6 C -0.239 4.239 7 H 0.056 0.944 8 C -0.031 4.031 9 N -0.953 5.953 10 Si 0.934 3.066 11 H -0.274 1.274 12 H -0.262 1.262 13 H -0.315 1.315 14 C 0.148 3.852 15 C -0.134 4.134 16 C 0.170 3.830 17 H 0.081 0.919 18 N -0.678 5.678 19 C 0.505 3.495 20 O -0.542 6.542 21 C 0.519 3.481 22 O -0.532 6.532 23 N -0.697 5.697 24 C 0.062 3.938 25 C 0.254 3.746 26 F -0.216 7.216 27 F -0.215 7.215 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.416 0.584 42 H 0.418 0.582 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 11.766 27.312 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 C -0.196 4.196 4 C 0.010 3.990 5 N -0.337 5.337 6 C -0.369 4.369 7 H 0.074 0.926 8 C -0.226 4.226 9 N -0.600 5.600 10 Si 0.763 3.237 11 H -0.201 1.201 12 H -0.187 1.187 13 H -0.244 1.244 14 C 0.022 3.978 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.099 0.901 18 N -0.331 5.331 19 C 0.286 3.714 20 O -0.420 6.420 21 C 0.299 3.701 22 O -0.408 6.408 23 N -0.351 5.351 24 C -0.062 4.062 25 C 0.201 3.799 26 F -0.197 7.197 27 F -0.197 7.197 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.255 0.745 42 H 0.255 0.745 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.435 11.749 27.188 29.948 hybrid contribution 0.636 -0.084 -1.107 1.280 sum 5.071 11.665 26.081 29.017 Atomic orbital electron populations 1.21718 0.93454 1.02045 1.01178 1.21309 0.97196 0.95919 0.94015 1.21837 1.01198 0.93877 1.02722 1.21520 0.96694 0.84252 0.96527 1.44461 1.65568 1.06084 1.17556 1.18827 1.18594 1.12781 0.86677 0.92598 1.25747 0.99902 1.01006 0.95962 1.69978 1.33507 1.50660 1.05835 0.86102 0.82801 0.78936 0.75843 1.20055 1.18690 1.24391 1.21008 0.97315 0.94582 0.84881 1.22309 1.01588 0.95079 0.98426 1.20875 0.99064 0.91125 0.82361 0.90106 1.45934 1.29498 1.48846 1.08788 1.20203 0.84031 0.82218 0.84995 1.90776 1.25812 1.40551 1.84832 1.19930 0.83781 0.81780 0.84596 1.90777 1.25140 1.39958 1.84952 1.45588 1.30145 1.50092 1.09302 1.22969 0.99797 1.00726 0.82687 1.22725 0.79404 0.77352 1.00452 1.93013 1.96583 1.34740 1.95388 1.93012 1.43029 1.89336 1.94319 0.91203 0.93623 0.92956 0.92339 0.92213 0.90784 0.95135 0.92553 0.93083 0.91995 0.94935 0.91230 0.91027 0.74485 0.74473 0.86343 0.86445 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 7.84 71.98 0.56 -3.42 16 2 C -0.08 -2.58 0.56 -51.96 -0.03 -2.60 16 3 C -0.14 -3.59 8.31 71.98 0.60 -2.99 16 4 C 0.14 5.52 2.93 86.51 0.25 5.78 16 5 N -0.61 -27.76 2.23 -698.25 -1.55 -29.32 16 6 C -0.24 -13.18 10.05 84.03 0.84 -12.33 16 7 H 0.06 3.37 8.04 -2.91 -0.02 3.34 16 8 C -0.03 -1.81 5.21 84.86 0.44 -1.36 16 9 N -0.95 -59.14 13.97 21.65 0.30 -58.83 16 10 Si 0.93 45.89 24.36 68.60 1.67 47.56 16 11 H -0.27 -12.64 6.68 99.48 0.66 -11.97 16 12 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 13 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 14 C 0.15 5.61 6.51 86.36 0.56 6.17 16 15 C -0.13 -4.23 5.31 30.67 0.16 -4.07 16 16 C 0.17 4.98 1.57 45.02 0.07 5.05 16 17 H 0.08 2.55 7.57 -2.39 -0.02 2.54 16 18 N -0.68 -16.64 4.28 -443.74 -1.90 -18.54 16 19 C 0.50 12.59 7.85 87.27 0.69 13.28 16 20 O -0.54 -16.01 16.14 -3.24 -0.05 -16.07 16 21 C 0.52 10.92 7.89 87.27 0.69 11.61 16 22 O -0.53 -12.54 16.48 -3.26 -0.05 -12.59 16 23 N -0.70 -11.03 5.41 -464.40 -2.51 -13.54 16 24 C 0.06 0.51 5.91 86.38 0.51 1.02 16 25 C 0.25 1.53 5.42 71.98 0.39 1.92 16 26 F -0.22 -2.64 17.20 44.97 0.77 -1.87 16 27 F -0.22 -2.60 17.20 44.97 0.77 -1.82 16 28 H 0.07 1.72 6.58 -2.38 -0.02 1.70 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.91 5.97 -2.39 -0.01 1.90 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.60 7.36 -2.38 -0.02 1.58 16 34 H 0.03 1.24 7.09 -2.39 -0.02 1.22 16 35 H 0.06 2.56 4.36 -2.39 -0.01 2.55 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.06 2.38 7.92 -2.38 -0.02 2.37 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 2.24 6.34 -2.39 -0.02 2.23 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.42 9.24 6.13 -92.71 -0.57 8.67 16 42 H 0.42 6.90 7.83 -92.71 -0.73 6.17 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.18 -0.61 8.14 -2.39 -0.02 -0.63 16 Total: -1.00 -71.29 361.59 2.84 -68.45 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.35 Total: 18.53 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 5.74 Total: 18.04 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -5.66 Total: -120.23 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.11 Total: -28.66 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 1.55 Total: -3.69 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.56 kcal Total: -71.29 2.84 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281558354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.280 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds