Wall clock time and date at job start Tue Mar 31 2020 17:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38048 * 126.29128 * 2 1 4 4 C 1.47430 * 126.41483 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00081 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99963 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47008 * 179.97438 * 9 8 7 11 11 N 1.31074 * 126.66226 * 269.68256 * 10 9 8 12 12 N 1.28848 * 107.98857 * 179.89742 * 11 10 9 13 13 N 1.28734 * 109.39474 * 0.38099 * 12 11 10 14 14 N 1.29019 * 108.81404 * 359.76634 * 13 12 11 15 15 C 1.46501 * 126.44008 * 179.97438 * 14 13 12 16 16 C 1.41282 * 107.17080 * 180.24676 * 3 2 1 17 17 N 1.30456 * 108.02295 * 359.61396 * 16 3 2 18 18 N 1.34257 * 126.28979 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75340 * 359.95991 * 18 2 1 20 20 C 1.50700 * 109.47167 * 89.99982 * 19 18 2 21 21 H 1.07997 * 119.99609 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99998 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00303 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46970 * 59.99952 * 24 22 20 26 26 H 1.48497 * 109.47398 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47006 * 300.00444 * 24 22 20 28 28 H 1.08997 * 109.46976 * 89.97495 * 1 2 3 29 29 H 1.08988 * 109.46985 * 209.97714 * 1 2 3 30 30 H 1.09003 * 109.47092 * 329.98032 * 1 2 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 33 33 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 34 34 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 35 35 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 36 36 H 1.08990 * 109.47021 * 299.99845 * 9 8 7 37 37 H 1.09002 * 109.46620 * 60.00037 * 9 8 7 38 38 H 1.08994 * 109.47173 * 270.02457 * 15 14 13 39 39 H 1.09000 * 109.46725 * 30.02416 * 15 14 13 40 40 H 1.09003 * 109.46943 * 150.02116 * 15 14 13 41 41 H 1.07998 * 125.99190 * 179.73259 * 16 3 2 42 42 H 1.09002 * 109.46712 * 209.99826 * 19 18 2 43 43 H 1.08998 * 109.47388 * 329.99578 * 19 18 2 44 44 H 0.97004 * 120.00119 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9095 0.0047 8 6 3.5901 5.8252 0.0098 9 6 3.1353 7.2861 0.0151 10 6 4.3426 8.1880 0.0208 11 7 4.9644 8.6567 1.0752 12 7 5.9456 9.3854 0.6673 13 7 5.9610 9.4000 -0.6199 14 7 4.9881 8.6735 -1.0559 15 6 4.6493 8.4241 -2.4592 16 6 3.6590 0.6499 -0.0058 17 7 3.6341 -0.6544 -0.0007 18 7 2.3017 -1.0822 -0.0005 19 6 1.8500 -2.4758 -0.0003 20 6 1.6944 -2.9536 -1.4210 21 1 1.9107 -2.2860 -2.2419 22 6 1.2768 -4.2433 -1.6727 23 7 1.0139 -5.0563 -0.6730 24 14 1.0845 -4.8359 -3.4338 25 1 2.3904 -4.7384 -4.1342 26 1 0.6278 -6.2488 -3.4335 27 1 0.0832 -3.9915 -4.1336 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2973 -0.0006 32 1 1.7667 5.1075 -0.8851 33 1 1.7650 5.0998 0.8949 34 1 4.1879 5.6272 0.8996 35 1 4.1897 5.6349 -0.8803 36 1 2.5379 7.4838 -0.8748 37 1 2.5356 7.4766 0.9052 38 1 3.9500 9.1854 -2.8049 39 1 5.5554 8.4616 -3.0639 40 1 4.1904 7.4398 -2.5528 41 1 4.5449 1.2676 -0.0114 42 1 2.5850 -3.0958 0.5131 43 1 0.8917 -2.5471 0.5141 44 1 0.7205 -5.9638 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001289682055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:44 Heat of formation + Delta-G solvation = 137.538975 kcal Electronic energy + Delta-G solvation = -26990.162598 eV Core-core repulsion = 22981.569982 eV Total energy + Delta-G solvation = -4008.592616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.59299 -40.82983 -38.96780 -36.64422 -35.91769 -34.19845 -33.86090 -32.20261 -31.68499 -31.07800 -29.09884 -27.93887 -26.87575 -26.30399 -23.94628 -23.58416 -22.91891 -21.89517 -21.86006 -19.88065 -19.03802 -17.93316 -17.68952 -17.10413 -16.79382 -16.28980 -16.11570 -15.21495 -15.06247 -14.91886 -14.55807 -14.40710 -14.33100 -13.90896 -13.85100 -13.31073 -13.20627 -13.02508 -12.79507 -12.58832 -12.48707 -12.39311 -12.13554 -12.00531 -11.80152 -11.54494 -11.50907 -11.43235 -11.32515 -11.16598 -10.90179 -10.47461 -10.40128 -10.22520 -9.99096 -9.47964 -9.07539 -8.73648 -8.63426 -7.96274 -6.36400 -4.44520 0.77402 1.51882 1.82493 2.13615 2.74868 3.05716 3.17109 3.21587 3.24533 3.37245 3.56863 3.67199 3.85857 4.11765 4.21291 4.27857 4.46730 4.50464 4.54011 4.62125 4.85186 4.97069 5.01598 5.07126 5.09063 5.21203 5.27708 5.28509 5.50006 5.60102 5.66317 5.69070 5.74756 5.89669 6.08975 6.36497 6.47723 6.55045 6.76003 6.87595 7.11615 7.52274 7.63795 7.73824 7.75227 8.19704 8.33260 8.52956 8.60537 9.22326 10.71740 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.001818 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.524416 B =15398.537433 C =15634.648316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.335 4.335 4 C 0.605 3.395 5 O -0.555 6.555 6 N -0.737 5.737 7 C 0.126 3.874 8 C -0.130 4.130 9 C -0.036 4.036 10 C 0.188 3.812 11 N -0.300 5.300 12 N -0.075 5.075 13 N -0.097 5.097 14 N -0.309 5.309 15 C 0.076 3.924 16 C 0.057 3.943 17 N -0.295 5.295 18 N -0.313 5.313 19 C 0.251 3.749 20 C -0.541 4.541 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.175 0.825 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 23.789 -2.644 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 C -0.350 4.350 4 C 0.396 3.604 5 O -0.434 6.434 6 N -0.390 5.390 7 C 0.002 3.998 8 C -0.169 4.169 9 C -0.077 4.077 10 C -0.090 4.090 11 N -0.150 5.150 12 N -0.069 5.069 13 N -0.083 5.083 14 N -0.111 5.111 15 C -0.066 4.066 16 C -0.130 4.130 17 N -0.115 5.115 18 N -0.090 5.090 19 C 0.134 3.866 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.232 0.768 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.192 0.808 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.732 23.295 -1.941 23.672 hybrid contribution -0.485 -0.267 -1.652 1.742 sum 3.247 23.029 -3.593 23.532 Atomic orbital electron populations 1.20571 0.86785 1.03813 1.03920 1.21493 0.94980 0.86540 0.94136 1.19654 0.93120 0.92476 1.29758 1.17289 0.84936 0.83894 0.74313 1.90696 1.16690 1.84469 1.51579 1.45671 1.09890 1.05290 1.78141 1.21150 0.95443 0.80349 1.02830 1.21797 0.98818 0.92200 1.04052 1.20148 0.90090 0.91095 1.06356 1.26101 0.99826 1.00436 0.82630 1.75060 1.04669 1.10908 1.24313 1.78652 1.13451 1.14187 1.00612 1.78904 1.08183 1.12919 1.08313 1.48448 1.19967 1.32047 1.10612 1.22466 1.04612 1.04741 0.74763 1.23708 0.96298 0.92647 1.00329 1.77151 0.98653 1.12280 1.23448 1.49378 1.02463 1.08337 1.48815 1.19861 0.96438 0.70884 0.99453 1.21193 1.47628 0.98150 0.90949 0.91738 1.24925 0.94437 0.95988 0.98311 1.69903 1.44343 1.07206 1.31180 0.86375 0.78856 0.77777 0.83468 1.19922 1.20855 1.19850 0.89838 0.90854 0.88808 0.76752 0.91339 0.91060 0.89854 0.90995 0.88471 0.86801 0.88237 0.87308 0.87348 0.80838 0.92499 0.92518 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.57 36.01 0.34 -1.27 16 2 C 0.17 3.26 7.01 -81.60 -0.57 2.69 16 3 C -0.33 -5.77 6.13 -105.07 -0.64 -6.41 16 4 C 0.61 9.11 7.81 -12.52 -0.10 9.01 16 5 O -0.56 -9.73 14.84 5.27 0.08 -9.66 16 6 N -0.74 -7.46 5.55 -61.39 -0.34 -7.80 16 7 C 0.13 0.91 5.67 -4.04 -0.02 0.89 16 8 C -0.13 -0.58 5.31 -26.73 -0.14 -0.72 16 9 C -0.04 -0.14 5.36 -27.88 -0.15 -0.28 16 10 C 0.19 1.36 7.39 -155.43 -1.15 0.21 16 11 N -0.30 -3.32 12.36 32.70 0.40 -2.92 16 12 N -0.08 -0.93 13.43 60.35 0.81 -0.12 16 13 N -0.10 -0.99 13.29 60.35 0.80 -0.19 16 14 N -0.31 -2.02 3.75 -65.03 -0.24 -2.27 16 15 C 0.08 0.10 11.09 59.85 0.66 0.76 16 16 C 0.06 0.94 11.50 -16.98 -0.20 0.75 16 17 N -0.30 -6.17 12.50 30.86 0.39 -5.78 16 18 N -0.31 -6.89 3.56 -57.77 -0.21 -7.10 16 19 C 0.25 6.13 5.97 -5.20 -0.03 6.09 16 20 C -0.54 -14.30 9.39 -34.44 -0.32 -14.63 16 21 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 24 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.25 7.05 -51.94 -0.37 0.88 16 30 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 31 H 0.40 3.18 7.43 -40.82 -0.30 2.87 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.12 7.81 -51.93 -0.41 -0.29 16 37 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 -0.03 8.14 -51.93 -0.42 -0.46 16 39 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.11 -0.08 7.75 -51.93 -0.40 -0.48 16 41 H 0.17 1.99 7.50 -52.49 -0.39 1.60 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.37 7.02 -51.93 -0.36 1.01 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -35.40 381.52 -5.18 -40.58 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.92 Total: -1.18 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.41 Total: -1.23 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 2.35 Total: -49.67 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.40 -5.18 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001289682055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.115 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds