Wall clock time and date at job start Tue Mar 31 2020 17:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38048 * 126.29128 * 2 1 4 4 C 1.47430 * 126.41483 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00081 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99963 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47008 * 179.97438 * 9 8 7 11 11 N 1.31074 * 126.66226 * 269.68256 * 10 9 8 12 12 N 1.28848 * 107.98857 * 179.89742 * 11 10 9 13 13 N 1.28734 * 109.39474 * 0.38099 * 12 11 10 14 14 N 1.29019 * 108.81404 * 359.76634 * 13 12 11 15 15 C 1.46501 * 126.44008 * 179.97438 * 14 13 12 16 16 C 1.41282 * 107.17080 * 180.24676 * 3 2 1 17 17 N 1.30456 * 108.02295 * 359.61396 * 16 3 2 18 18 N 1.34257 * 126.28979 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75340 * 359.95991 * 18 2 1 20 20 C 1.50700 * 109.47167 * 89.99982 * 19 18 2 21 21 H 1.07997 * 119.99609 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99998 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00303 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46970 * 59.99952 * 24 22 20 26 26 H 1.48497 * 109.47398 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47006 * 300.00444 * 24 22 20 28 28 H 1.08997 * 109.46976 * 89.97495 * 1 2 3 29 29 H 1.08988 * 109.46985 * 209.97714 * 1 2 3 30 30 H 1.09003 * 109.47092 * 329.98032 * 1 2 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 33 33 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 34 34 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 35 35 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 36 36 H 1.08990 * 109.47021 * 299.99845 * 9 8 7 37 37 H 1.09002 * 109.46620 * 60.00037 * 9 8 7 38 38 H 1.08994 * 109.47173 * 270.02457 * 15 14 13 39 39 H 1.09000 * 109.46725 * 30.02416 * 15 14 13 40 40 H 1.09003 * 109.46943 * 150.02116 * 15 14 13 41 41 H 1.07998 * 125.99190 * 179.73259 * 16 3 2 42 42 H 1.09002 * 109.46712 * 209.99826 * 19 18 2 43 43 H 1.08998 * 109.47388 * 329.99578 * 19 18 2 44 44 H 0.97004 * 120.00119 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9095 0.0047 8 6 3.5901 5.8252 0.0098 9 6 3.1353 7.2861 0.0151 10 6 4.3426 8.1880 0.0208 11 7 4.9644 8.6567 1.0752 12 7 5.9456 9.3854 0.6673 13 7 5.9610 9.4000 -0.6199 14 7 4.9881 8.6735 -1.0559 15 6 4.6493 8.4241 -2.4592 16 6 3.6590 0.6499 -0.0058 17 7 3.6341 -0.6544 -0.0007 18 7 2.3017 -1.0822 -0.0005 19 6 1.8500 -2.4758 -0.0003 20 6 1.6944 -2.9536 -1.4210 21 1 1.9107 -2.2860 -2.2419 22 6 1.2768 -4.2433 -1.6727 23 7 1.0139 -5.0563 -0.6730 24 14 1.0845 -4.8359 -3.4338 25 1 2.3904 -4.7384 -4.1342 26 1 0.6278 -6.2488 -3.4335 27 1 0.0832 -3.9915 -4.1336 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2973 -0.0006 32 1 1.7667 5.1075 -0.8851 33 1 1.7650 5.0998 0.8949 34 1 4.1879 5.6272 0.8996 35 1 4.1897 5.6349 -0.8803 36 1 2.5379 7.4838 -0.8748 37 1 2.5356 7.4766 0.9052 38 1 3.9500 9.1854 -2.8049 39 1 5.5554 8.4616 -3.0639 40 1 4.1904 7.4398 -2.5528 41 1 4.5449 1.2676 -0.0114 42 1 2.5850 -3.0958 0.5131 43 1 0.8917 -2.5471 0.5141 44 1 0.7205 -5.9638 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001289682055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:43 Heat of formation + Delta-G solvation = 111.571372 kcal Electronic energy + Delta-G solvation = -26991.288637 eV Core-core repulsion = 22981.569982 eV Total energy + Delta-G solvation = -4009.718656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.20196 -42.27032 -40.08327 -37.24371 -36.48801 -35.80202 -34.92106 -33.80320 -32.78051 -32.24486 -29.61895 -29.14662 -28.34043 -27.25294 -25.34448 -24.52692 -23.78211 -22.95030 -22.35830 -21.18139 -20.43776 -18.84821 -18.45803 -18.34609 -18.11948 -17.09452 -16.78870 -16.71716 -16.28449 -16.05440 -15.81923 -15.30835 -15.20123 -14.64865 -14.55596 -14.45972 -14.22798 -14.05686 -13.76347 -13.62634 -13.53743 -13.41595 -13.34172 -13.07508 -13.03649 -12.94583 -12.67746 -12.46750 -12.29132 -12.16995 -11.87522 -11.83317 -11.80754 -11.69217 -11.07055 -10.75405 -10.72835 -10.24526 -10.01335 -9.38776 -8.36784 -6.53373 0.22018 0.72721 1.13826 1.16997 1.35744 1.39646 1.40800 1.48733 1.68721 2.32701 2.41820 2.61104 2.95295 3.02413 3.29545 3.77208 3.78164 3.89277 4.05749 4.08583 4.16876 4.19906 4.27971 4.30494 4.38142 4.56197 4.60632 4.62505 4.65976 4.69482 4.80878 4.82664 4.87695 4.92740 5.09061 5.15137 5.19557 5.24996 5.31183 5.49659 5.61765 5.72330 5.75814 6.07037 6.55550 6.68849 6.88624 7.17621 7.43580 7.54549 8.70763 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.001818 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.524416 B =15398.537433 C =15634.648316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.331 4.331 4 C 0.606 3.394 5 O -0.582 6.582 6 N -0.718 5.718 7 C 0.125 3.875 8 C -0.116 4.116 9 C -0.031 4.031 10 C 0.196 3.804 11 N -0.338 5.338 12 N -0.116 5.116 13 N -0.114 5.114 14 N -0.298 5.298 15 C 0.060 3.940 16 C 0.079 3.921 17 N -0.340 5.340 18 N -0.339 5.339 19 C 0.267 3.733 20 C -0.555 4.555 21 H 0.053 0.947 22 C 0.022 3.978 23 N -0.917 5.917 24 Si 0.972 3.028 25 H -0.273 1.273 26 H -0.275 1.275 27 H -0.265 1.265 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.411 0.589 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.227 0.773 42 H 0.030 0.970 43 H 0.050 0.950 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 25.320 -4.636 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 C -0.346 4.346 4 C 0.395 3.605 5 O -0.464 6.464 6 N -0.370 5.370 7 C 0.002 3.998 8 C -0.156 4.156 9 C -0.072 4.072 10 C -0.082 4.082 11 N -0.188 5.188 12 N -0.110 5.110 13 N -0.101 5.101 14 N -0.100 5.100 15 C -0.079 4.079 16 C -0.108 4.108 17 N -0.160 5.160 18 N -0.116 5.116 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.071 0.929 22 C -0.179 4.179 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.190 1.190 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.248 0.752 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.243 0.757 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.642 24.872 -3.942 25.444 hybrid contribution -0.434 -0.613 -1.056 1.295 sum 3.208 24.259 -4.998 24.976 Atomic orbital electron populations 1.20546 0.85921 1.03981 1.03915 1.22008 0.95953 0.86811 0.94527 1.20013 0.93090 0.93366 1.28150 1.17036 0.85114 0.83738 0.74652 1.90687 1.17938 1.84686 1.53057 1.45538 1.09866 1.05688 1.75862 1.21320 0.96680 0.78735 1.03066 1.21654 0.97542 0.91841 1.04524 1.20315 0.88862 0.89704 1.08334 1.26551 0.99827 0.99828 0.81987 1.74953 1.05335 1.11991 1.26471 1.78614 1.14864 1.15880 1.01654 1.78796 1.09585 1.13867 1.07840 1.48808 1.18571 1.30443 1.12213 1.23024 1.05758 1.07080 0.72053 1.24510 0.97733 0.91547 0.96994 1.77099 0.98369 1.14642 1.25861 1.49088 1.03409 1.07739 1.51378 1.19353 0.95221 0.72487 0.98158 1.21357 1.47930 0.98462 0.91541 0.92885 1.25750 0.93867 0.95977 1.02309 1.69994 1.44799 1.07576 1.33120 0.85395 0.78838 0.77633 0.78592 1.19823 1.19930 1.18999 0.89869 0.91338 0.87847 0.75232 0.90385 0.91625 0.90851 0.89201 0.84909 0.86572 0.86139 0.86609 0.84476 0.75727 0.95229 0.93222 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.57 71.24 0.68 -2.33 16 2 C 0.14 5.61 7.01 42.14 0.30 5.91 16 3 C -0.33 -10.88 6.13 -20.15 -0.12 -11.00 16 4 C 0.61 16.73 7.81 86.66 0.68 17.41 16 5 O -0.58 -19.29 14.84 -4.04 -0.06 -19.35 16 6 N -0.72 -11.91 5.55 -466.38 -2.59 -14.50 16 7 C 0.13 1.33 5.67 86.38 0.49 1.82 16 8 C -0.12 -0.58 5.31 30.59 0.16 -0.42 16 9 C -0.03 -0.12 5.36 29.85 0.16 0.04 16 10 C 0.20 2.39 7.39 138.13 1.02 3.41 16 11 N -0.34 -7.28 12.36 -50.45 -0.62 -7.91 16 12 N -0.12 -2.89 13.43 37.01 0.50 -2.39 16 13 N -0.11 -2.24 13.29 37.02 0.49 -1.75 16 14 N -0.30 -3.20 3.75 -359.64 -1.35 -4.55 16 15 C 0.06 -0.07 11.09 127.77 1.42 1.35 16 16 C 0.08 2.43 11.50 85.65 0.99 3.42 16 17 N -0.34 -14.12 12.50 -56.28 -0.70 -14.83 16 18 N -0.34 -15.24 3.56 -336.70 -1.20 -16.44 16 19 C 0.27 13.57 5.97 85.63 0.51 14.08 16 20 C -0.55 -30.04 9.39 25.60 0.24 -29.80 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 22 C 0.02 1.19 5.46 84.65 0.46 1.65 16 23 N -0.92 -50.80 13.29 21.45 0.28 -50.52 16 24 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.07 2.42 7.05 -2.39 -0.02 2.40 16 30 H 0.10 3.39 6.50 -2.39 -0.02 3.37 16 31 H 0.41 4.76 7.43 -92.71 -0.69 4.07 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.13 -0.39 7.81 -2.39 -0.02 -0.41 16 37 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.12 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.14 -0.92 7.75 -2.39 -0.02 -0.94 16 41 H 0.23 4.18 7.50 -2.91 -0.02 4.16 16 42 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 2.54 7.02 -2.39 -0.02 2.52 16 44 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -80.88 381.52 4.11 -76.77 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.36 Total: 6.09 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.98 Total: 5.54 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -5.19 Total: -112.87 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -80.88 4.11 -76.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001289682055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.339 kcal (2) G-P(sol) polarization free energy of solvation -80.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds