Wall clock time and date at job start Tue Mar 31 2020 17:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 N 1.34185 * 125.67922 * 258.18627 * 3 2 1 5 5 C 1.30519 * 109.80016 * 180.02562 * 4 3 2 6 6 N 1.34691 * 108.35121 * 359.97438 * 5 4 3 7 7 C 1.46500 * 126.73768 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47255 * 125.00411 * 7 6 5 9 9 N 1.46494 * 109.47083 * 180.02562 * 8 7 6 10 10 C 1.34778 * 119.99841 * 179.97438 * 9 8 7 11 11 O 1.21587 * 120.00567 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99864 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99840 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.45607 * 275.02875 * 13 12 10 15 15 C 1.53201 * 109.30797 * 178.60489 * 14 13 12 16 16 N 1.46922 * 108.76776 * 54.65245 * 15 14 13 17 17 C 1.36941 * 120.62671 * 126.40383 * 16 15 14 18 18 H 1.07994 * 120.00616 * 331.82800 * 17 16 15 19 19 C 1.38817 * 119.99400 * 151.83238 * 17 16 15 20 20 N 1.31615 * 119.99997 * 343.06478 * 19 17 16 21 21 Si 1.86798 * 119.99920 * 163.07295 * 19 17 16 22 22 H 1.48506 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47645 * 119.99536 * 21 19 17 24 24 H 1.48496 * 109.46921 * 239.99766 * 21 19 17 25 25 C 1.46924 * 118.73949 * 306.38908 * 16 15 14 26 26 C 1.53042 * 109.45930 * 154.97531 * 13 12 10 27 27 N 1.31728 * 125.67520 * 77.87905 * 3 2 1 28 28 H 1.08001 * 125.82540 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47169 * 244.99625 * 7 6 5 30 30 H 1.08997 * 109.47365 * 5.00009 * 7 6 5 31 31 H 1.09003 * 109.46391 * 299.99691 * 8 7 6 32 32 H 1.08997 * 109.47262 * 59.99535 * 8 7 6 33 33 H 0.96999 * 120.00535 * 359.97438 * 9 8 7 34 34 H 0.97003 * 120.00187 * 0.02562 * 12 10 9 35 35 H 1.08992 * 109.45988 * 35.00112 * 13 12 10 36 36 H 1.09005 * 109.50100 * 298.56366 * 14 13 12 37 37 H 1.08996 * 109.50487 * 58.66694 * 14 13 12 38 38 H 1.09000 * 109.59368 * 294.86305 * 15 14 13 39 39 H 1.09005 * 109.70025 * 174.50654 * 15 14 13 40 40 H 0.96999 * 120.00162 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.57995 * 293.81704 * 25 16 15 42 42 H 1.08998 * 109.70596 * 173.46623 * 25 16 15 43 43 H 1.08995 * 109.49644 * 301.33836 * 26 13 12 44 44 H 1.09004 * 109.49603 * 61.43081 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3505 0.2241 1.0669 5 6 4.6059 0.1521 0.7172 6 7 4.6641 -0.1235 -0.5999 7 6 5.8749 -0.2919 -1.4072 8 6 5.8312 -1.6474 -2.1156 9 7 7.0423 -1.8160 -2.9224 10 6 7.2230 -2.9431 -3.6390 11 8 6.3813 -3.8201 -3.6155 12 7 8.3370 -3.0980 -4.3817 13 6 8.5333 -4.3229 -5.1611 14 6 9.1539 -5.4007 -4.2693 15 6 9.3254 -6.6905 -5.0780 16 7 10.1009 -6.3894 -6.2890 17 6 11.2299 -7.1037 -6.5899 18 1 11.8155 -7.5471 -5.7983 19 6 11.6216 -7.2577 -7.9128 20 7 10.7658 -7.0212 -8.8843 21 14 13.3633 -7.8008 -8.3139 22 1 14.1225 -7.9997 -7.0532 23 1 13.3217 -9.0760 -9.0736 24 1 14.0306 -6.7577 -9.1336 25 6 9.6420 -5.3078 -7.1711 26 6 9.4667 -4.0337 -6.3390 27 7 3.3363 -0.2237 -1.0462 28 1 5.4535 0.2893 1.3724 29 1 5.9302 0.5042 -2.1497 30 1 6.7516 -0.2478 -0.7610 31 1 5.7759 -2.4436 -1.3731 32 1 4.9545 -1.6916 -2.7617 33 1 7.7140 -1.1166 -2.9409 34 1 9.0088 -2.3985 -4.4002 35 1 7.5717 -4.6721 -5.5371 36 1 10.1269 -5.0623 -3.9131 37 1 8.4999 -5.5895 -3.4180 38 1 8.3463 -7.0791 -5.3582 39 1 9.8551 -7.4317 -4.4796 40 1 11.0394 -7.1292 -9.8086 41 1 8.6889 -5.5838 -7.6221 42 1 10.3800 -5.1341 -7.9542 43 1 9.0353 -3.2494 -6.9609 44 1 10.4367 -3.7083 -5.9630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322632535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:16 Heat of formation + Delta-G solvation = 125.770729 kcal Electronic energy + Delta-G solvation = -26983.187659 eV Core-core repulsion = 22974.084734 eV Total energy + Delta-G solvation = -4009.102925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.92506 -40.13124 -37.72347 -37.21320 -36.22302 -34.43712 -34.02061 -32.23434 -32.13863 -30.34014 -29.81953 -28.94918 -25.71307 -24.84031 -23.56731 -22.58636 -22.30256 -21.96689 -20.79378 -19.56835 -19.34980 -18.36510 -17.30569 -16.89728 -16.53732 -16.19803 -15.89738 -15.77720 -14.93442 -14.72697 -14.61918 -14.31936 -13.90034 -13.82686 -13.73561 -13.56920 -13.46115 -13.17191 -13.01392 -12.86590 -12.60672 -12.37215 -12.13112 -11.49087 -11.15704 -10.93628 -10.89499 -10.76252 -10.69691 -10.52316 -10.41233 -10.31079 -10.16877 -10.05505 -9.79379 -9.58704 -9.42364 -8.70387 -8.48311 -6.71193 -5.82405 -3.24645 0.45157 1.19652 1.51737 1.94725 2.53064 2.84079 2.94620 3.21670 3.34318 3.42629 3.44647 3.66609 3.88861 4.01425 4.20769 4.40261 4.46858 4.47029 5.02788 5.19730 5.29092 5.32389 5.33400 5.40017 5.47173 5.56773 5.84316 5.88188 6.03992 6.11763 6.24133 6.29926 6.42366 6.52938 6.56137 6.74195 6.75819 6.79578 6.93164 7.01043 7.10538 7.28532 7.58835 7.77035 7.98237 8.41747 8.59905 9.18002 9.81163 10.38162 11.26560 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.001655 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.018656 B =16916.050774 C =17131.757612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C 0.308 3.692 3 C 0.300 3.700 4 N -0.510 5.510 5 C 0.277 3.723 6 N -0.364 5.364 7 C 0.117 3.883 8 C 0.128 3.872 9 N -0.753 5.753 10 C 0.704 3.296 11 O -0.585 6.585 12 N -0.736 5.736 13 C 0.168 3.832 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.174 3.826 26 C -0.146 4.146 27 N -0.249 5.249 28 H 0.235 0.765 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.392 0.608 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.056 0.944 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 19.336 17.365 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.037 5.037 2 C -0.012 4.012 3 C 0.018 3.982 4 N -0.237 5.237 5 C -0.019 4.019 6 N -0.156 5.156 7 C -0.005 4.005 8 C 0.002 3.998 9 N -0.411 5.411 10 C 0.403 3.597 11 O -0.462 6.462 12 N -0.390 5.390 13 C 0.064 3.936 14 C -0.179 4.179 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.047 3.953 26 C -0.186 4.186 27 N -0.082 5.082 28 H 0.251 0.749 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.363 18.356 16.769 26.231 hybrid contribution 2.340 0.465 -0.210 2.395 sum -6.023 18.821 16.558 25.781 Atomic orbital electron populations 1.81338 1.10304 1.06329 1.05762 1.22891 0.89044 0.94766 0.94529 1.18113 0.88632 1.03138 0.88332 1.70598 1.00531 1.23927 1.28676 1.26280 0.96597 0.94958 0.84088 1.50490 1.05280 1.51299 1.08571 1.22115 0.82381 0.99813 0.96172 1.21253 0.88758 0.94670 0.95124 1.44855 1.23590 1.20682 1.51966 1.15927 0.82859 0.81959 0.78908 1.90961 1.44650 1.42135 1.68410 1.45549 1.20934 1.22404 1.50065 1.20952 0.99722 0.82274 0.90622 1.22390 0.99722 0.97523 0.98296 1.20884 0.94976 0.93287 0.88876 1.44098 1.27809 1.36167 1.23453 1.19234 0.99451 1.28356 0.91118 0.91588 1.25059 0.98216 1.00179 0.96223 1.70031 1.32731 1.53106 0.98864 0.86230 0.84658 0.77887 0.78037 1.20268 1.21715 1.21592 1.20740 0.99080 0.83508 0.91927 1.22545 0.98056 1.01440 0.96538 1.78574 0.87362 1.21913 1.20308 0.74865 0.87722 0.86415 0.90746 0.89892 0.77076 0.77546 0.90005 0.92429 0.92736 0.96151 0.92562 0.93634 0.96066 0.89013 0.92747 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -4.05 18.54 41.84 0.78 -3.28 16 2 C 0.31 3.04 16.01 -22.48 -0.36 2.68 16 3 C 0.30 2.62 7.82 -158.51 -1.24 1.38 16 4 N -0.51 -3.74 11.22 -13.79 -0.15 -3.90 16 5 C 0.28 0.96 12.61 -90.68 -1.14 -0.19 16 6 N -0.36 -1.71 3.70 -62.64 -0.23 -1.94 16 7 C 0.12 0.24 6.66 -4.04 -0.03 0.21 16 8 C 0.13 0.84 5.88 -4.04 -0.02 0.81 16 9 N -0.75 -5.47 5.56 -65.23 -0.36 -5.83 16 10 C 0.70 9.10 8.53 -86.91 -0.74 8.35 16 11 O -0.58 -10.53 16.01 5.29 0.08 -10.44 16 12 N -0.74 -9.08 5.08 -58.63 -0.30 -9.38 16 13 C 0.17 2.76 2.42 -67.89 -0.16 2.60 16 14 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 15 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 16 N -0.59 -14.44 2.99 -172.32 -0.52 -14.95 16 17 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 21 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.17 3.96 5.30 -3.72 -0.02 3.94 16 26 C -0.15 -2.52 5.55 -26.61 -0.15 -2.66 16 27 N -0.25 -2.10 12.61 30.96 0.39 -1.71 16 28 H 0.24 -0.45 8.06 -52.49 -0.42 -0.88 16 29 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.12 -0.20 8.09 -51.93 -0.42 -0.62 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 1.34 8.49 -40.82 -0.35 1.00 16 34 H 0.39 3.54 8.62 -40.82 -0.35 3.19 16 35 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.33 6.07 -51.93 -0.31 2.02 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -36.52 379.53 -9.29 -45.80 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.01 Total: -1.85 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: -4.27 Total: 10.68 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.22 Total: -66.02 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.52 -9.29 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322632535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.575 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds