Wall clock time and date at job start Tue Mar 31 2020 17:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 N 1.34185 * 125.67922 * 258.18627 * 3 2 1 5 5 C 1.30519 * 109.80016 * 180.02562 * 4 3 2 6 6 N 1.34691 * 108.35121 * 359.97438 * 5 4 3 7 7 C 1.46500 * 126.73768 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47255 * 125.00411 * 7 6 5 9 9 N 1.46494 * 109.47083 * 180.02562 * 8 7 6 10 10 C 1.34778 * 119.99841 * 179.97438 * 9 8 7 11 11 O 1.21587 * 120.00567 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99864 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99840 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.45607 * 275.02875 * 13 12 10 15 15 C 1.53201 * 109.30797 * 178.60489 * 14 13 12 16 16 N 1.46922 * 108.76776 * 54.65245 * 15 14 13 17 17 C 1.36941 * 120.62671 * 126.40383 * 16 15 14 18 18 H 1.07994 * 120.00616 * 331.82800 * 17 16 15 19 19 C 1.38817 * 119.99400 * 151.83238 * 17 16 15 20 20 N 1.31615 * 119.99997 * 343.06478 * 19 17 16 21 21 Si 1.86798 * 119.99920 * 163.07295 * 19 17 16 22 22 H 1.48506 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47645 * 119.99536 * 21 19 17 24 24 H 1.48496 * 109.46921 * 239.99766 * 21 19 17 25 25 C 1.46924 * 118.73949 * 306.38908 * 16 15 14 26 26 C 1.53042 * 109.45930 * 154.97531 * 13 12 10 27 27 N 1.31728 * 125.67520 * 77.87905 * 3 2 1 28 28 H 1.08001 * 125.82540 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47169 * 244.99625 * 7 6 5 30 30 H 1.08997 * 109.47365 * 5.00009 * 7 6 5 31 31 H 1.09003 * 109.46391 * 299.99691 * 8 7 6 32 32 H 1.08997 * 109.47262 * 59.99535 * 8 7 6 33 33 H 0.96999 * 120.00535 * 359.97438 * 9 8 7 34 34 H 0.97003 * 120.00187 * 0.02562 * 12 10 9 35 35 H 1.08992 * 109.45988 * 35.00112 * 13 12 10 36 36 H 1.09005 * 109.50100 * 298.56366 * 14 13 12 37 37 H 1.08996 * 109.50487 * 58.66694 * 14 13 12 38 38 H 1.09000 * 109.59368 * 294.86305 * 15 14 13 39 39 H 1.09005 * 109.70025 * 174.50654 * 15 14 13 40 40 H 0.96999 * 120.00162 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.57995 * 293.81704 * 25 16 15 42 42 H 1.08998 * 109.70596 * 173.46623 * 25 16 15 43 43 H 1.08995 * 109.49644 * 301.33836 * 26 13 12 44 44 H 1.09004 * 109.49603 * 61.43081 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3505 0.2241 1.0669 5 6 4.6059 0.1521 0.7172 6 7 4.6641 -0.1235 -0.5999 7 6 5.8749 -0.2919 -1.4072 8 6 5.8312 -1.6474 -2.1156 9 7 7.0423 -1.8160 -2.9224 10 6 7.2230 -2.9431 -3.6390 11 8 6.3813 -3.8201 -3.6155 12 7 8.3370 -3.0980 -4.3817 13 6 8.5333 -4.3229 -5.1611 14 6 9.1539 -5.4007 -4.2693 15 6 9.3254 -6.6905 -5.0780 16 7 10.1009 -6.3894 -6.2890 17 6 11.2299 -7.1037 -6.5899 18 1 11.8155 -7.5471 -5.7983 19 6 11.6216 -7.2577 -7.9128 20 7 10.7658 -7.0212 -8.8843 21 14 13.3633 -7.8008 -8.3139 22 1 14.1225 -7.9997 -7.0532 23 1 13.3217 -9.0760 -9.0736 24 1 14.0306 -6.7577 -9.1336 25 6 9.6420 -5.3078 -7.1711 26 6 9.4667 -4.0337 -6.3390 27 7 3.3363 -0.2237 -1.0462 28 1 5.4535 0.2893 1.3724 29 1 5.9302 0.5042 -2.1497 30 1 6.7516 -0.2478 -0.7610 31 1 5.7759 -2.4436 -1.3731 32 1 4.9545 -1.6916 -2.7617 33 1 7.7140 -1.1166 -2.9409 34 1 9.0088 -2.3985 -4.4002 35 1 7.5717 -4.6721 -5.5371 36 1 10.1269 -5.0623 -3.9131 37 1 8.4999 -5.5895 -3.4180 38 1 8.3463 -7.0791 -5.3582 39 1 9.8551 -7.4317 -4.4796 40 1 11.0394 -7.1292 -9.8086 41 1 8.6889 -5.5838 -7.6221 42 1 10.3800 -5.1341 -7.9542 43 1 9.0353 -3.2494 -6.9609 44 1 10.4367 -3.7083 -5.9630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322632535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:15 Heat of formation + Delta-G solvation = 98.794719 kcal Electronic energy + Delta-G solvation = -26984.357426 eV Core-core repulsion = 22974.084734 eV Total energy + Delta-G solvation = -4010.272693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.34458 -41.19018 -39.15283 -37.99337 -36.96197 -35.91460 -34.73282 -33.79553 -32.69546 -31.81836 -31.26698 -29.87819 -26.97695 -26.00683 -24.22919 -23.87137 -23.46450 -22.85446 -21.86835 -21.04377 -19.91038 -19.46778 -18.62559 -17.80764 -17.21691 -17.04917 -16.80518 -16.58062 -16.17374 -15.76759 -15.53938 -15.46304 -15.33489 -15.12874 -14.74460 -14.62331 -14.54766 -14.26298 -14.18000 -14.01489 -13.61102 -13.26583 -13.15677 -13.00234 -12.61815 -12.52882 -12.48695 -12.19734 -11.97410 -11.84899 -11.54394 -11.44856 -11.36541 -11.22280 -11.14894 -10.82751 -10.55580 -10.34641 -9.74553 -8.69447 -7.86643 -5.32370 -0.08554 0.81214 1.11053 1.25027 1.48800 1.51029 1.61592 1.72991 2.18625 2.26679 2.29589 2.53231 3.24341 3.31249 3.45049 3.67800 3.69107 3.84853 3.93444 4.08216 4.10968 4.30358 4.37408 4.49201 4.57144 4.67917 4.70580 4.80164 4.85327 4.89650 4.93884 5.05816 5.09627 5.18950 5.32190 5.38624 5.49723 5.62250 5.66707 5.68900 5.72869 6.02885 6.06666 6.40415 6.69156 7.15927 7.17504 7.63823 7.85537 8.38369 9.20577 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.001655 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.018656 B =16916.050774 C =17131.757612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.322 3.678 3 C 0.284 3.716 4 N -0.540 5.540 5 C 0.299 3.701 6 N -0.362 5.362 7 C 0.125 3.875 8 C 0.129 3.871 9 N -0.724 5.724 10 C 0.700 3.300 11 O -0.640 6.640 12 N -0.722 5.722 13 C 0.181 3.819 14 C -0.122 4.122 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.287 1.287 25 C 0.177 3.823 26 C -0.126 4.126 27 N -0.282 5.282 28 H 0.292 0.708 29 H 0.123 0.877 30 H 0.172 0.828 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.420 0.580 34 H 0.413 0.587 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.003 0.997 39 H 0.057 0.943 40 H 0.250 0.750 41 H -0.009 1.009 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 21.802 19.520 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C 0.003 3.997 3 C 0.003 3.997 4 N -0.269 5.269 5 C 0.005 3.995 6 N -0.154 5.154 7 C 0.004 3.996 8 C 0.003 3.997 9 N -0.383 5.383 10 C 0.400 3.600 11 O -0.521 6.521 12 N -0.377 5.377 13 C 0.075 3.925 14 C -0.162 4.162 15 C 0.016 3.984 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.086 0.914 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.224 1.224 24 H -0.214 1.214 25 C 0.051 3.949 26 C -0.166 4.166 27 N -0.115 5.115 28 H 0.307 0.693 29 H 0.141 0.859 30 H 0.190 0.810 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.259 0.741 34 H 0.250 0.750 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.009 0.991 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.523 20.911 18.969 28.768 hybrid contribution 1.482 -0.340 -0.858 1.746 sum -4.041 20.571 18.111 27.704 Atomic orbital electron populations 1.81325 1.11356 1.07832 1.07075 1.23184 0.89545 0.93629 0.93367 1.18032 0.88086 1.04414 0.89210 1.70577 1.02108 1.25369 1.28817 1.27364 0.96661 0.91785 0.83731 1.50642 1.04452 1.50877 1.09408 1.22372 0.82818 0.97015 0.97409 1.21219 0.87015 0.97307 0.94194 1.44486 1.24235 1.19371 1.50193 1.16120 0.82104 0.82706 0.79112 1.90940 1.46435 1.44558 1.70159 1.45048 1.21620 1.21580 1.49453 1.20466 0.97758 0.83702 0.90569 1.22166 1.00474 0.95876 0.97697 1.20985 0.93625 0.95455 0.88292 1.44354 1.27792 1.36704 1.24326 1.19567 1.00158 1.28135 0.91333 0.91381 1.25822 1.01748 1.00879 0.96107 1.70193 1.34496 1.54660 0.98922 0.85189 0.80277 0.76912 0.77928 1.18948 1.22360 1.21391 1.20574 0.96477 0.85721 0.92158 1.22239 0.99228 0.98828 0.96296 1.78492 0.89389 1.22543 1.21109 0.69292 0.85891 0.81026 0.92247 0.93284 0.74135 0.75001 0.93072 0.91136 0.92400 0.97901 0.92430 0.94061 0.99075 0.91835 0.90493 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -9.48 18.54 19.00 0.35 -9.12 16 2 C 0.32 6.65 16.01 88.33 1.41 8.07 16 3 C 0.28 4.89 7.82 135.87 1.06 5.95 16 4 N -0.54 -6.96 11.22 -197.54 -2.22 -9.18 16 5 C 0.30 0.89 12.61 180.37 2.27 3.16 16 6 N -0.36 -2.25 3.70 -352.08 -1.30 -3.56 16 7 C 0.12 -0.07 6.66 86.38 0.58 0.50 16 8 C 0.13 1.38 5.88 86.38 0.51 1.89 16 9 N -0.72 -8.09 5.56 -478.54 -2.66 -10.75 16 10 C 0.70 16.71 8.53 179.05 1.53 18.23 16 11 O -0.64 -22.99 16.01 -3.99 -0.06 -23.05 16 12 N -0.72 -15.84 5.08 -457.67 -2.33 -18.16 16 13 C 0.18 5.74 2.42 45.02 0.11 5.85 16 14 C -0.12 -4.12 5.65 30.67 0.17 -3.95 16 15 C 0.14 6.06 6.52 86.37 0.56 6.62 16 16 N -0.61 -30.02 2.99 -699.10 -2.09 -32.11 16 17 C -0.26 -14.09 9.58 84.03 0.81 -13.28 16 18 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 19 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 20 N -0.94 -54.61 11.19 21.65 0.24 -54.36 16 21 Si 0.97 43.65 29.59 68.60 2.03 45.68 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 25 C 0.18 8.23 5.30 86.36 0.46 8.69 16 26 C -0.13 -4.18 5.55 30.67 0.17 -4.01 16 27 N -0.28 -4.54 12.61 -55.97 -0.71 -5.24 16 28 H 0.29 -3.01 8.06 -2.91 -0.02 -3.03 16 29 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.17 -1.84 8.09 -2.39 -0.02 -1.86 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.42 0.68 8.49 -92.71 -0.79 -0.10 16 34 H 0.41 5.68 8.62 -92.71 -0.80 4.88 16 35 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 40 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 43 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -86.84 379.53 0.79 -86.05 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -0.53 Total: -1.58 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 10.06 Total: 35.39 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -10.71 Total: -142.50 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -86.84 0.79 -86.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322632535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.847 kcal (2) G-P(sol) polarization free energy of solvation -86.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds