Wall clock time and date at job start Tue Mar 31 2020 18:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39897 * 109.47498 * 2 1 4 4 F 1.39895 * 109.47393 * 239.99394 * 2 1 3 5 5 C 1.50705 * 109.46818 * 119.99824 * 2 1 3 6 6 O 1.21285 * 119.99989 * 335.00178 * 5 2 1 7 7 N 1.34782 * 120.00228 * 155.00021 * 5 2 1 8 8 C 1.46497 * 120.00247 * 180.02562 * 7 5 2 9 9 H 1.09000 * 110.28576 * 35.66925 * 8 7 5 10 10 C 1.54379 * 110.32113 * 273.54750 * 8 7 5 11 11 N 1.48558 * 104.59176 * 217.25024 * 10 8 7 12 12 C 1.46906 * 111.00058 * 159.03792 * 11 10 8 13 13 C 1.50700 * 109.47059 * 69.87633 * 12 11 10 14 14 O 1.21295 * 119.99931 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99916 * 180.02562 * 13 12 11 16 16 C 1.37103 * 119.99762 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99954 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99825 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00184 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00151 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46689 * 90.00492 * 20 18 16 22 22 H 1.48497 * 109.47325 * 210.00302 * 20 18 16 23 23 H 1.48502 * 109.46884 * 330.00436 * 20 18 16 24 24 C 1.48560 * 104.22665 * 39.48186 * 11 10 8 25 25 C 1.54259 * 110.32359 * 157.90718 * 8 7 5 26 26 C 1.53004 * 110.32352 * 237.79058 * 25 8 7 27 27 C 1.52998 * 110.32448 * 359.89922 * 25 8 7 28 28 H 1.08998 * 109.47469 * 300.00182 * 1 2 3 29 29 H 1.09006 * 109.46359 * 59.99977 * 1 2 3 30 30 H 1.08997 * 109.47374 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99602 * 359.97438 * 7 5 2 32 32 H 1.08999 * 110.41200 * 98.47257 * 10 8 7 33 33 H 1.08998 * 110.41242 * 336.02825 * 10 8 7 34 34 H 1.09003 * 109.46997 * 189.87203 * 12 11 10 35 35 H 1.08999 * 109.47193 * 309.87166 * 12 11 10 36 36 H 0.96994 * 120.00415 * 359.97438 * 15 13 12 37 37 H 0.96997 * 120.00321 * 179.97438 * 19 18 16 38 38 H 1.08996 * 110.41118 * 79.28958 * 24 11 10 39 39 H 1.08992 * 110.41578 * 201.73789 * 24 11 10 40 40 H 1.08997 * 109.46690 * 59.99821 * 26 25 8 41 41 H 1.08997 * 109.46961 * 180.02562 * 26 25 8 42 42 H 1.09008 * 109.46966 * 300.00100 * 26 25 8 43 43 H 1.08994 * 109.47088 * 60.00037 * 27 25 8 44 44 H 1.09001 * 109.46886 * 179.97438 * 27 25 8 45 45 H 1.09004 * 109.46686 * 299.99948 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3368 -0.7705 2.2224 7 7 3.2542 -1.2790 1.2289 8 6 3.7423 -1.9701 2.4249 9 1 2.9208 -2.4798 2.9284 10 6 4.4200 -0.9681 3.3840 11 7 5.5684 -1.7164 3.9567 12 6 6.5842 -0.7969 4.4868 13 6 6.0519 -0.1191 5.7231 14 8 4.9360 -0.3763 6.1229 15 7 6.8154 0.7736 6.3838 16 6 6.3309 1.3906 7.5082 17 1 5.3373 1.1616 7.8642 18 6 7.1179 2.3113 8.1891 19 7 6.6538 2.9024 9.2672 20 14 8.8362 2.7079 7.5729 21 1 8.7699 3.8439 6.6187 22 1 9.7014 3.0767 8.7221 23 1 9.4032 1.5185 6.8881 24 6 6.1030 -2.4971 2.8115 25 6 4.8494 -2.9760 2.0481 26 6 4.4609 -4.3864 2.4963 27 6 5.1008 -2.9491 0.5392 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8102 -1.2313 0.4355 32 1 3.7291 -0.6701 4.1727 33 1 4.7712 -0.0944 2.8350 34 1 7.4849 -1.3567 4.7387 35 1 6.8221 -0.0453 3.7342 36 1 7.7076 0.9795 6.0639 37 1 7.2032 3.5449 9.7427 38 1 6.7176 -1.8628 2.1728 39 1 6.6794 -3.3503 3.1690 40 1 3.5321 -4.6800 2.0071 41 1 5.2520 -5.0849 2.2240 42 1 4.3219 -4.3988 3.5774 43 1 5.4129 -1.9484 0.2406 44 1 5.8849 -3.6637 0.2887 45 1 4.1840 -3.2158 0.0134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330171900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:57 Heat of formation + Delta-G solvation = -150.174164 kcal Electronic energy + Delta-G solvation = -30024.859028 eV Core-core repulsion = 25520.808297 eV Total energy + Delta-G solvation = -4504.050731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.55044 -47.54392 -40.73116 -39.15768 -38.06143 -35.04463 -33.95958 -33.45694 -31.92510 -31.64923 -29.49522 -27.68274 -27.60772 -25.49233 -24.87116 -23.41407 -21.61260 -20.79776 -19.77485 -19.27898 -18.74741 -18.16877 -18.10096 -17.06382 -16.23087 -16.15168 -15.68609 -15.29903 -15.12368 -14.91379 -14.51549 -14.34648 -14.15516 -13.99760 -13.87487 -13.80740 -13.55510 -13.22926 -12.97924 -12.92134 -12.90274 -12.73947 -12.43814 -12.36271 -12.24134 -12.16785 -11.86201 -11.73103 -11.37829 -11.20932 -11.10455 -10.93640 -10.69250 -10.58663 -10.25786 -9.95548 -9.54350 -9.40876 -8.64254 -8.18533 -8.11759 -6.28811 -3.80171 1.87457 2.30695 3.03169 3.07334 3.15652 3.35116 3.60259 3.75476 3.93670 4.08269 4.11937 4.17839 4.27170 4.41184 4.60878 4.80605 5.01863 5.03491 5.05847 5.17713 5.20785 5.22493 5.33345 5.37976 5.46993 5.50749 5.54758 5.62546 5.66635 5.72045 5.77669 5.86615 5.92230 5.96055 6.06469 6.18675 6.33987 6.90468 6.97533 7.03189 7.58263 7.60238 8.16729 8.62367 8.97696 9.44559 9.85649 10.84427 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.003123 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.793538 B = 8964.409982 C =10073.249321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.280 3.720 3 F -0.180 7.180 4 F -0.192 7.192 5 C 0.482 3.518 6 O -0.491 6.491 7 N -0.706 5.706 8 C 0.145 3.855 9 H 0.107 0.893 10 C 0.029 3.971 11 N -0.479 5.479 12 C 0.032 3.968 13 C 0.453 3.547 14 O -0.556 6.556 15 N -0.592 5.592 16 C -0.303 4.303 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.037 3.963 25 C -0.074 4.074 26 C -0.134 4.134 27 C -0.148 4.148 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.407 0.593 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.369 0.631 37 H 0.273 0.727 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -10.876 -24.137 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.241 3.759 3 F -0.161 7.161 4 F -0.173 7.173 5 C 0.263 3.737 6 O -0.364 6.364 7 N -0.361 5.361 8 C 0.041 3.959 9 H 0.125 0.875 10 C -0.100 4.100 11 N -0.203 5.203 12 C -0.100 4.100 13 C 0.238 3.762 14 O -0.437 6.437 15 N -0.232 5.232 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.092 4.092 25 C -0.075 4.075 26 C -0.191 4.191 27 C -0.206 4.206 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.245 0.755 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.202 0.798 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.955 -11.266 -22.510 25.655 hybrid contribution 2.269 1.264 -1.515 3.007 sum -2.685 -10.002 -24.026 26.163 Atomic orbital electron populations 1.22641 0.88703 1.06352 1.06338 1.21422 0.96030 0.76321 0.82169 1.93108 1.90491 1.35998 1.96530 1.93045 1.90524 1.80716 1.52993 1.20762 0.83039 0.80763 0.89179 1.90841 1.55964 1.56916 1.32670 1.46376 1.16741 1.55299 1.17698 1.22022 0.97170 0.92452 0.84305 0.87505 1.23589 0.94595 0.94251 0.97564 1.65125 1.06221 1.21953 1.26996 1.22109 0.95561 0.95388 0.96904 1.19581 0.87119 0.83169 0.86319 1.90565 1.19840 1.64711 1.68622 1.42195 1.15500 1.39010 1.26483 1.19432 1.03447 1.19342 1.00987 0.86262 1.25030 0.98337 0.96778 0.96021 1.69622 1.37477 1.27751 1.17359 0.86680 0.84485 0.79008 0.79254 1.19708 1.20177 1.19511 1.23322 0.95525 0.98552 0.91760 1.21534 0.94489 0.96123 0.95327 1.21826 1.01043 0.93602 1.02660 1.21910 1.02409 1.01832 0.94405 0.87806 0.89130 0.88779 0.75451 0.87280 0.93932 0.88924 0.93148 0.79794 0.91644 0.93704 0.89471 0.92659 0.92204 0.91016 0.92555 0.91354 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 8.92 37.16 0.33 -1.08 16 2 C 0.28 2.80 2.47 -27.88 -0.07 2.73 16 3 F -0.18 -2.08 17.05 2.25 0.04 -2.05 16 4 F -0.19 -1.74 16.51 2.25 0.04 -1.70 16 5 C 0.48 5.93 7.22 -10.98 -0.08 5.85 16 6 O -0.49 -7.67 15.79 5.55 0.09 -7.58 16 7 N -0.71 -7.64 4.52 -52.46 -0.24 -7.88 16 8 C 0.14 1.80 2.99 -66.55 -0.20 1.60 16 9 H 0.11 1.49 7.22 -51.93 -0.37 1.12 16 10 C 0.03 0.46 5.51 -2.18 -0.01 0.45 16 11 N -0.48 -7.50 5.06 -231.41 -1.17 -8.67 16 12 C 0.03 0.54 5.30 -4.97 -0.03 0.51 16 13 C 0.45 10.41 7.59 -10.99 -0.08 10.33 16 14 O -0.56 -15.11 14.42 5.54 0.08 -15.03 16 15 N -0.59 -14.27 5.09 -10.96 -0.06 -14.33 16 16 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 17 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 20 Si 0.88 19.54 27.74 -169.99 -4.71 14.83 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 24 C 0.04 0.41 5.58 -2.18 -0.01 0.39 16 25 C -0.07 -0.71 1.03 -153.12 -0.16 -0.87 16 26 C -0.13 -1.20 8.23 37.16 0.31 -0.90 16 27 C -0.15 -1.04 7.10 37.16 0.26 -0.77 16 28 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.41 3.51 5.35 -40.82 -0.22 3.30 16 32 H 0.11 2.22 6.91 -51.93 -0.36 1.87 16 33 H 0.04 0.67 7.73 -51.93 -0.40 0.27 16 34 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 35 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 36 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.04 0.45 7.69 -51.93 -0.40 0.05 16 39 H 0.09 0.89 7.86 -51.93 -0.41 0.48 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.06 0.37 6.96 -51.93 -0.36 0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.42 7.73 -51.93 -0.40 0.02 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -34.24 370.10 -6.06 -40.31 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.49 Total: 11.38 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 0.01 Total: 10.45 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.69 Total: -56.18 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.17 Total: -22.61 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.24 -6.06 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330171900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.869 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds