Wall clock time and date at job start Tue Mar 31 2020 18:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39897 * 109.47498 * 2 1 4 4 F 1.39895 * 109.47393 * 239.99394 * 2 1 3 5 5 C 1.50705 * 109.46818 * 119.99824 * 2 1 3 6 6 O 1.21285 * 119.99989 * 335.00178 * 5 2 1 7 7 N 1.34782 * 120.00228 * 155.00021 * 5 2 1 8 8 C 1.46497 * 120.00247 * 180.02562 * 7 5 2 9 9 H 1.09000 * 110.28576 * 35.66925 * 8 7 5 10 10 C 1.54379 * 110.32113 * 273.54750 * 8 7 5 11 11 N 1.48558 * 104.59176 * 217.25024 * 10 8 7 12 12 C 1.46906 * 111.00058 * 159.03792 * 11 10 8 13 13 C 1.50700 * 109.47059 * 69.87633 * 12 11 10 14 14 O 1.21295 * 119.99931 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99916 * 180.02562 * 13 12 11 16 16 C 1.37103 * 119.99762 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99954 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99825 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00184 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00151 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46689 * 90.00492 * 20 18 16 22 22 H 1.48497 * 109.47325 * 210.00302 * 20 18 16 23 23 H 1.48502 * 109.46884 * 330.00436 * 20 18 16 24 24 C 1.48560 * 104.22665 * 39.48186 * 11 10 8 25 25 C 1.54259 * 110.32359 * 157.90718 * 8 7 5 26 26 C 1.53004 * 110.32352 * 237.79058 * 25 8 7 27 27 C 1.52998 * 110.32448 * 359.89922 * 25 8 7 28 28 H 1.08998 * 109.47469 * 300.00182 * 1 2 3 29 29 H 1.09006 * 109.46359 * 59.99977 * 1 2 3 30 30 H 1.08997 * 109.47374 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99602 * 359.97438 * 7 5 2 32 32 H 1.08999 * 110.41200 * 98.47257 * 10 8 7 33 33 H 1.08998 * 110.41242 * 336.02825 * 10 8 7 34 34 H 1.09003 * 109.46997 * 189.87203 * 12 11 10 35 35 H 1.08999 * 109.47193 * 309.87166 * 12 11 10 36 36 H 0.96994 * 120.00415 * 359.97438 * 15 13 12 37 37 H 0.96997 * 120.00321 * 179.97438 * 19 18 16 38 38 H 1.08996 * 110.41118 * 79.28958 * 24 11 10 39 39 H 1.08992 * 110.41578 * 201.73789 * 24 11 10 40 40 H 1.08997 * 109.46690 * 59.99821 * 26 25 8 41 41 H 1.08997 * 109.46961 * 180.02562 * 26 25 8 42 42 H 1.09008 * 109.46966 * 300.00100 * 26 25 8 43 43 H 1.08994 * 109.47088 * 60.00037 * 27 25 8 44 44 H 1.09001 * 109.46886 * 179.97438 * 27 25 8 45 45 H 1.09004 * 109.46686 * 299.99948 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3368 -0.7705 2.2224 7 7 3.2542 -1.2790 1.2289 8 6 3.7423 -1.9701 2.4249 9 1 2.9208 -2.4798 2.9284 10 6 4.4200 -0.9681 3.3840 11 7 5.5684 -1.7164 3.9567 12 6 6.5842 -0.7969 4.4868 13 6 6.0519 -0.1191 5.7231 14 8 4.9360 -0.3763 6.1229 15 7 6.8154 0.7736 6.3838 16 6 6.3309 1.3906 7.5082 17 1 5.3373 1.1616 7.8642 18 6 7.1179 2.3113 8.1891 19 7 6.6538 2.9024 9.2672 20 14 8.8362 2.7079 7.5729 21 1 8.7699 3.8439 6.6187 22 1 9.7014 3.0767 8.7221 23 1 9.4032 1.5185 6.8881 24 6 6.1030 -2.4971 2.8115 25 6 4.8494 -2.9760 2.0481 26 6 4.4609 -4.3864 2.4963 27 6 5.1008 -2.9491 0.5392 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8102 -1.2313 0.4355 32 1 3.7291 -0.6701 4.1727 33 1 4.7712 -0.0944 2.8350 34 1 7.4849 -1.3567 4.7387 35 1 6.8221 -0.0453 3.7342 36 1 7.7076 0.9795 6.0639 37 1 7.2032 3.5449 9.7427 38 1 6.7176 -1.8628 2.1728 39 1 6.6794 -3.3503 3.1690 40 1 3.5321 -4.6800 2.0071 41 1 5.2520 -5.0849 2.2240 42 1 4.3219 -4.3988 3.5774 43 1 5.4129 -1.9484 0.2406 44 1 5.8849 -3.6637 0.2887 45 1 4.1840 -3.2158 0.0134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330171900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:56 Heat of formation + Delta-G solvation = -177.927645 kcal Electronic energy + Delta-G solvation = -30026.062510 eV Core-core repulsion = 25520.808297 eV Total energy + Delta-G solvation = -4505.254212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.37686 -48.36868 -41.76000 -40.48837 -39.61875 -36.35097 -35.78327 -34.48782 -33.76696 -32.67557 -30.66871 -28.89883 -28.32141 -26.70302 -26.21971 -24.64594 -22.76976 -21.79289 -21.31092 -20.63969 -20.13290 -19.54427 -18.93839 -17.96418 -17.78619 -17.18710 -16.82889 -16.72168 -16.45592 -16.21807 -15.65359 -15.60277 -15.22422 -15.08068 -15.02132 -14.69543 -14.67969 -14.56685 -14.25074 -14.09946 -14.04817 -13.61878 -13.58935 -13.37626 -13.14623 -13.10967 -13.06777 -12.86363 -12.64074 -12.45945 -12.42437 -11.99804 -11.93399 -11.80945 -11.63248 -11.50066 -11.24901 -10.46723 -10.41179 -10.25889 -9.43788 -8.42683 -6.04047 0.87714 1.28136 1.34203 1.39020 1.43352 1.94254 2.21774 2.47877 2.65425 2.82945 3.12311 3.17462 3.35002 3.37984 3.41273 3.50820 3.82472 4.07764 4.10298 4.20443 4.27591 4.33366 4.43160 4.47122 4.53067 4.61316 4.65881 4.74442 4.81750 4.90821 4.94350 4.96822 5.02429 5.10795 5.18140 5.29988 5.42800 5.50804 5.75883 5.87773 5.98964 6.01609 6.58179 6.66824 6.86914 7.37837 7.96327 8.75339 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.003123 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.793538 B = 8964.409982 C =10073.249321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.288 3.712 3 F -0.189 7.189 4 F -0.181 7.181 5 C 0.475 3.525 6 O -0.533 6.533 7 N -0.692 5.692 8 C 0.151 3.849 9 H 0.082 0.918 10 C 0.033 3.967 11 N -0.505 5.505 12 C 0.044 3.956 13 C 0.448 3.552 14 O -0.609 6.609 15 N -0.591 5.591 16 C -0.329 4.329 17 H 0.051 0.949 18 C -0.016 4.016 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.229 1.229 24 C 0.039 3.961 25 C -0.064 4.064 26 C -0.132 4.132 27 C -0.145 4.145 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.420 0.580 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -12.016 -28.291 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.248 3.752 3 F -0.170 7.170 4 F -0.162 7.162 5 C 0.257 3.743 6 O -0.409 6.409 7 N -0.348 5.348 8 C 0.046 3.954 9 H 0.100 0.900 10 C -0.096 4.096 11 N -0.229 5.229 12 C -0.087 4.087 13 C 0.236 3.764 14 O -0.493 6.493 15 N -0.234 5.234 16 C -0.459 4.459 17 H 0.069 0.931 18 C -0.215 4.215 19 N -0.577 5.577 20 Si 0.787 3.213 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.152 1.152 24 C -0.088 4.088 25 C -0.066 4.066 26 C -0.189 4.189 27 C -0.202 4.202 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.463 -12.434 -26.726 29.513 hybrid contribution 1.045 1.571 -0.159 1.894 sum -0.418 -10.863 -26.884 28.999 Atomic orbital electron populations 1.22705 0.86846 1.07369 1.06997 1.21349 0.97125 0.75494 0.81239 1.93094 1.90749 1.36658 1.96527 1.93065 1.90557 1.80449 1.52150 1.21306 0.83061 0.80393 0.89546 1.90829 1.57175 1.58480 1.34437 1.46294 1.16450 1.54399 1.17611 1.21802 0.97224 0.92162 0.84220 0.89963 1.23339 0.94354 0.95496 0.96454 1.65012 1.06289 1.21874 1.29753 1.22048 0.96300 0.96361 0.93992 1.20956 0.86173 0.81896 0.87417 1.90557 1.22395 1.65976 1.70330 1.42007 1.16552 1.39323 1.25480 1.18986 1.01686 1.21584 1.03599 0.93075 1.26154 1.04273 0.95457 0.95583 1.69813 1.40138 1.28532 1.19179 0.85339 0.76420 0.80458 0.79123 1.18226 1.19891 1.15165 1.23482 0.96250 0.98640 0.90466 1.21545 0.92421 0.95147 0.97439 1.21816 1.02284 0.93801 1.01018 1.21916 1.03592 1.03108 0.91598 0.88936 0.86646 0.87669 0.73785 0.93284 0.93843 0.85373 0.90116 0.77458 0.91124 0.91247 0.87803 0.92161 0.89747 0.93610 0.91709 0.89115 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.92 71.98 0.64 -1.99 16 2 C 0.29 5.47 2.47 29.85 0.07 5.54 16 3 F -0.19 -4.22 17.05 44.97 0.77 -3.46 16 4 F -0.18 -2.86 16.51 44.97 0.74 -2.12 16 5 C 0.48 11.80 7.22 87.66 0.63 12.43 16 6 O -0.53 -17.72 15.79 -3.05 -0.05 -17.76 16 7 N -0.69 -14.42 4.52 -438.29 -1.98 -16.40 16 8 C 0.15 3.76 2.99 45.89 0.14 3.90 16 9 H 0.08 2.47 7.22 -2.39 -0.02 2.45 16 10 C 0.03 1.09 5.51 86.45 0.48 1.57 16 11 N -0.50 -15.31 5.06 -886.04 -4.49 -19.80 16 12 C 0.04 1.38 5.30 85.56 0.45 1.84 16 13 C 0.45 21.03 7.59 87.66 0.66 21.70 16 14 O -0.61 -35.48 14.42 -3.08 -0.04 -35.53 16 15 N -0.59 -28.70 5.09 -306.98 -1.56 -30.26 16 16 C -0.33 -19.89 10.16 84.04 0.85 -19.04 16 17 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 18 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 19 N -0.94 -57.72 13.96 21.66 0.30 -57.42 16 20 Si 0.97 39.32 27.74 68.60 1.90 41.23 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 24 C 0.04 0.72 5.58 86.45 0.48 1.20 16 25 C -0.06 -1.08 1.03 -51.28 -0.05 -1.13 16 26 C -0.13 -2.10 8.23 71.98 0.59 -1.50 16 27 C -0.14 -1.39 7.10 71.98 0.51 -0.88 16 28 H 0.09 1.58 7.87 -2.39 -0.02 1.56 16 29 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.42 6.25 5.35 -92.71 -0.50 5.76 16 32 H 0.05 2.20 6.91 -2.39 -0.02 2.19 16 33 H 0.04 1.38 7.73 -2.39 -0.02 1.36 16 34 H 0.13 3.14 8.13 -2.39 -0.02 3.12 16 35 H 0.08 2.08 7.88 -2.39 -0.02 2.06 16 36 H 0.39 15.48 5.76 -92.71 -0.53 14.94 16 37 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 39 H 0.10 1.64 7.86 -2.39 -0.02 1.62 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.06 0.55 6.96 -2.39 -0.02 0.53 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 0.64 7.73 -2.39 -0.02 0.62 16 Total: -1.00 -85.03 370.10 1.47 -83.56 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.06 Total: 34.79 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 5.93 Total: 23.17 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -7.73 Total: -123.88 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.09 Total: -53.29 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.51 Total: -5.57 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.23 kcal Total: -85.03 1.47 -83.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330171900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.370 kcal (2) G-P(sol) polarization free energy of solvation -85.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds