Wall clock time and date at job start Tue Mar 31 2020 18:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39901 * 109.46916 * 2 1 4 4 F 1.39894 * 109.47244 * 240.00061 * 2 1 3 5 5 C 1.50700 * 109.47268 * 119.99411 * 2 1 3 6 6 O 1.21277 * 119.99930 * 25.00625 * 5 2 1 7 7 N 1.34774 * 120.00159 * 205.00012 * 5 2 1 8 8 C 1.46495 * 120.00159 * 180.02562 * 7 5 2 9 9 H 1.09008 * 110.28755 * 327.12918 * 8 7 5 10 10 C 1.54375 * 110.41132 * 89.31308 * 8 7 5 11 11 N 1.48564 * 104.59631 * 142.79219 * 10 8 7 12 12 C 1.46903 * 111.00118 * 200.95924 * 11 10 8 13 13 C 1.50694 * 109.47120 * 176.49017 * 12 11 10 14 14 O 1.21292 * 120.00225 * 6.06456 * 13 12 11 15 15 N 1.34778 * 119.99993 * 186.05986 * 13 12 11 16 16 C 1.37098 * 119.99931 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00005 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00033 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99755 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99974 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47177 * 89.99844 * 20 18 16 22 22 H 1.48498 * 109.47237 * 209.99865 * 20 18 16 23 23 H 1.48498 * 109.47215 * 330.00308 * 20 18 16 24 24 C 1.48722 * 104.28776 * 320.57454 * 11 10 8 25 25 C 1.54268 * 110.32630 * 205.00119 * 8 7 5 26 26 C 1.53004 * 110.31910 * 359.89984 * 25 8 7 27 27 C 1.52995 * 110.32262 * 122.00332 * 25 8 7 28 28 H 1.09010 * 109.47340 * 299.99879 * 1 2 3 29 29 H 1.08990 * 109.47578 * 60.00406 * 1 2 3 30 30 H 1.09004 * 109.47183 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99868 * 0.02562 * 7 5 2 32 32 H 1.08998 * 110.41273 * 261.57202 * 10 8 7 33 33 H 1.09002 * 110.41298 * 23.89475 * 10 8 7 34 34 H 1.09002 * 109.47012 * 296.49341 * 12 11 10 35 35 H 1.09006 * 109.46933 * 56.49297 * 12 11 10 36 36 H 0.96994 * 120.00163 * 0.02562 * 15 13 12 37 37 H 0.97009 * 119.99767 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.38909 * 280.63809 * 24 11 10 39 39 H 1.09003 * 110.50616 * 158.14207 * 24 11 10 40 40 H 1.09005 * 109.46620 * 181.42633 * 26 25 8 41 41 H 1.08999 * 109.47173 * 301.42265 * 26 25 8 42 42 H 1.08998 * 109.47127 * 61.42669 * 26 25 8 43 43 H 1.09005 * 109.47552 * 298.57288 * 27 25 8 44 44 H 1.08996 * 109.47789 * 58.57590 * 27 25 8 45 45 H 1.09003 * 109.46889 * 178.57541 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3371 -1.5392 1.7785 7 7 3.2543 -0.4244 1.7220 8 6 3.7429 -1.1153 2.9178 9 1 2.9141 -1.3413 3.5889 10 6 4.4841 -2.4114 2.5257 11 7 5.6137 -2.5020 3.4865 12 6 6.6789 -3.3696 2.9664 13 6 7.8409 -3.3686 3.9260 14 8 7.7457 -2.8001 4.9932 15 7 8.9860 -3.9994 3.5983 16 6 10.0433 -3.9980 4.4711 17 1 9.9585 -3.4918 5.4213 18 6 11.2236 -4.6489 4.1335 19 7 12.2369 -4.6480 4.9703 20 14 11.3701 -5.5251 2.4903 21 1 11.8908 -4.5800 1.4701 22 1 12.3024 -6.6733 2.6230 23 1 10.0335 -6.0185 2.0716 24 6 6.0889 -1.0998 3.6275 25 6 4.7981 -0.2532 3.6412 26 6 5.0166 1.0612 2.8891 27 6 4.3606 0.0255 5.0805 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.8103 0.2388 1.2838 32 1 3.8251 -3.2731 2.6315 33 1 4.8567 -2.3420 1.5037 34 1 6.2991 -4.3854 2.8567 35 1 7.0087 -2.9982 1.9961 36 1 9.0623 -4.4538 2.7448 37 1 13.0610 -5.1021 4.7345 38 1 6.7154 -0.8241 2.7792 39 1 6.6358 -0.9741 4.5620 40 1 5.7820 1.6476 3.3974 41 1 5.3395 0.8475 1.8702 42 1 4.0839 1.6248 2.8640 43 1 3.4223 0.5803 5.0742 44 1 4.2208 -0.9185 5.6071 45 1 5.1269 0.6134 5.5858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330171901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:00 Heat of formation + Delta-G solvation = -151.046292 kcal Electronic energy + Delta-G solvation = -29857.146153 eV Core-core repulsion = 25353.057604 eV Total energy + Delta-G solvation = -4504.088550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.66127 -47.65745 -40.78447 -39.25842 -38.06481 -35.06880 -33.92931 -33.56718 -32.04538 -31.68859 -29.56510 -27.55962 -27.42677 -25.62205 -24.92929 -23.47751 -21.60184 -20.89299 -19.68027 -19.39723 -18.77296 -18.32742 -18.16993 -17.14788 -16.32565 -15.98345 -15.85174 -15.36349 -15.24748 -14.88267 -14.63411 -14.44364 -14.20756 -13.97639 -13.92169 -13.70916 -13.45605 -13.26210 -13.11037 -13.08974 -12.89360 -12.82371 -12.48824 -12.45325 -12.19854 -12.13906 -11.90700 -11.71444 -11.39738 -11.18553 -10.93811 -10.88607 -10.62455 -10.57368 -10.38271 -9.99859 -9.57309 -9.55259 -8.62458 -8.23732 -8.14445 -6.33330 -3.84723 1.72091 2.18578 3.01207 3.04900 3.13569 3.24579 3.48364 3.70529 3.89347 4.05275 4.07904 4.11799 4.26500 4.43536 4.65175 4.82869 4.91975 5.02880 5.06372 5.12605 5.14874 5.18768 5.37301 5.43327 5.48360 5.52250 5.59499 5.70822 5.72692 5.79222 5.82474 5.92565 5.94053 5.98966 6.06204 6.31197 6.41893 6.81699 6.96159 7.03130 7.43868 7.55684 8.11742 8.57499 8.92718 9.39942 9.80168 10.79677 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002657 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.464209 B =10535.687136 C =11232.589662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.280 3.720 3 F -0.190 7.190 4 F -0.181 7.181 5 C 0.484 3.516 6 O -0.500 6.500 7 N -0.703 5.703 8 C 0.145 3.855 9 H 0.108 0.892 10 C 0.020 3.980 11 N -0.480 5.480 12 C 0.032 3.968 13 C 0.452 3.548 14 O -0.559 6.559 15 N -0.590 5.590 16 C -0.304 4.304 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.043 3.957 25 C -0.076 4.076 26 C -0.147 4.147 27 C -0.132 4.132 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.409 0.591 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.040 0.960 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.437 11.232 -12.202 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.240 3.760 3 F -0.171 7.171 4 F -0.162 7.162 5 C 0.265 3.735 6 O -0.373 6.373 7 N -0.358 5.358 8 C 0.041 3.959 9 H 0.126 0.874 10 C -0.109 4.109 11 N -0.204 5.204 12 C -0.100 4.100 13 C 0.238 3.762 14 O -0.441 6.441 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.705 3.295 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.084 4.084 25 C -0.077 4.077 26 C -0.205 4.205 27 C -0.189 4.189 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.248 0.752 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.887 10.721 -10.521 26.546 hybrid contribution 1.099 -0.193 -2.617 2.845 sum -20.788 10.528 -13.139 26.751 Atomic orbital electron populations 1.22640 0.88709 1.06909 1.05757 1.21412 0.96008 0.75577 0.82977 1.93065 1.90486 1.36829 1.96689 1.93099 1.90513 1.80750 1.51879 1.20760 0.82959 0.84041 0.85765 1.90798 1.56077 1.32040 1.58432 1.46419 1.16650 1.42779 1.29908 1.21977 0.97396 0.91236 0.85286 0.87404 1.23564 0.94441 0.98021 0.94913 1.65204 1.06414 1.08228 1.40533 1.22125 0.92513 0.99140 0.96225 1.19553 0.83470 0.84469 0.88730 1.90535 1.82039 1.46958 1.24545 1.42211 1.13066 1.49259 1.18432 1.19421 0.89576 1.33042 1.01246 0.86231 1.25037 0.95453 0.97702 0.97951 1.69622 1.03938 1.43005 1.35492 0.86683 0.78545 0.80307 0.83934 1.19681 1.20136 1.19474 1.23425 0.94629 0.86665 1.03695 1.21610 0.94782 0.94697 0.96608 1.21904 1.02371 0.96562 0.99645 1.21798 1.00649 1.02551 0.93914 0.88727 0.89083 0.87948 0.75195 0.89295 0.93538 0.88812 0.93339 0.79729 0.91599 0.94128 0.86964 0.91112 0.92767 0.91935 0.93046 0.91127 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 8.92 37.16 0.33 -0.78 16 2 C 0.28 2.36 2.47 -27.89 -0.07 2.29 16 3 F -0.19 -1.56 16.51 2.25 0.04 -1.53 16 4 F -0.18 -1.75 17.05 2.25 0.04 -1.71 16 5 C 0.48 4.99 7.23 -10.99 -0.08 4.92 16 6 O -0.50 -6.42 15.74 5.56 0.09 -6.34 16 7 N -0.70 -6.75 4.48 -52.47 -0.24 -6.99 16 8 C 0.15 1.63 3.03 -66.55 -0.20 1.43 16 9 H 0.11 1.31 7.13 -51.92 -0.37 0.94 16 10 C 0.02 0.25 6.21 -2.18 -0.01 0.24 16 11 N -0.48 -7.51 5.18 -231.27 -1.20 -8.71 16 12 C 0.03 0.53 5.39 -4.98 -0.03 0.51 16 13 C 0.45 10.07 7.43 -10.99 -0.08 9.99 16 14 O -0.56 -14.45 14.01 5.55 0.08 -14.37 16 15 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 16 C -0.30 -8.49 10.16 -14.93 -0.15 -8.65 16 17 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 20 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 24 C 0.04 0.64 4.68 -2.09 -0.01 0.63 16 25 C -0.08 -0.85 1.03 -153.12 -0.16 -1.01 16 26 C -0.15 -1.30 7.11 37.16 0.26 -1.03 16 27 C -0.13 -1.46 8.23 37.16 0.31 -1.15 16 28 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.65 7.87 -51.93 -0.41 0.24 16 31 H 0.41 3.34 5.44 -40.82 -0.22 3.12 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 36 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 39 H 0.11 2.03 6.26 -51.93 -0.33 1.70 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.44 6.87 -51.93 -0.36 0.08 16 42 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -32.42 369.35 -6.09 -38.51 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.48 Total: 11.31 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 0.01 Total: 8.42 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.72 Total: -54.41 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.17 Total: -20.71 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.42 -6.09 -38.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330171901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.537 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds