Wall clock time and date at job start Tue Mar 31 2020 18:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39901 * 109.46916 * 2 1 4 4 F 1.39894 * 109.47244 * 240.00061 * 2 1 3 5 5 C 1.50700 * 109.47268 * 119.99411 * 2 1 3 6 6 O 1.21277 * 119.99930 * 25.00625 * 5 2 1 7 7 N 1.34774 * 120.00159 * 205.00012 * 5 2 1 8 8 C 1.46495 * 120.00159 * 180.02562 * 7 5 2 9 9 H 1.09008 * 110.28755 * 327.12918 * 8 7 5 10 10 C 1.54375 * 110.41132 * 89.31308 * 8 7 5 11 11 N 1.48564 * 104.59631 * 142.79219 * 10 8 7 12 12 C 1.46903 * 111.00118 * 200.95924 * 11 10 8 13 13 C 1.50694 * 109.47120 * 176.49017 * 12 11 10 14 14 O 1.21292 * 120.00225 * 6.06456 * 13 12 11 15 15 N 1.34778 * 119.99993 * 186.05986 * 13 12 11 16 16 C 1.37098 * 119.99931 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00005 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00033 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99755 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99974 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47177 * 89.99844 * 20 18 16 22 22 H 1.48498 * 109.47237 * 209.99865 * 20 18 16 23 23 H 1.48498 * 109.47215 * 330.00308 * 20 18 16 24 24 C 1.48722 * 104.28776 * 320.57454 * 11 10 8 25 25 C 1.54268 * 110.32630 * 205.00119 * 8 7 5 26 26 C 1.53004 * 110.31910 * 359.89984 * 25 8 7 27 27 C 1.52995 * 110.32262 * 122.00332 * 25 8 7 28 28 H 1.09010 * 109.47340 * 299.99879 * 1 2 3 29 29 H 1.08990 * 109.47578 * 60.00406 * 1 2 3 30 30 H 1.09004 * 109.47183 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99868 * 0.02562 * 7 5 2 32 32 H 1.08998 * 110.41273 * 261.57202 * 10 8 7 33 33 H 1.09002 * 110.41298 * 23.89475 * 10 8 7 34 34 H 1.09002 * 109.47012 * 296.49341 * 12 11 10 35 35 H 1.09006 * 109.46933 * 56.49297 * 12 11 10 36 36 H 0.96994 * 120.00163 * 0.02562 * 15 13 12 37 37 H 0.97009 * 119.99767 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.38909 * 280.63809 * 24 11 10 39 39 H 1.09003 * 110.50616 * 158.14207 * 24 11 10 40 40 H 1.09005 * 109.46620 * 181.42633 * 26 25 8 41 41 H 1.08999 * 109.47173 * 301.42265 * 26 25 8 42 42 H 1.08998 * 109.47127 * 61.42669 * 26 25 8 43 43 H 1.09005 * 109.47552 * 298.57288 * 27 25 8 44 44 H 1.08996 * 109.47789 * 58.57590 * 27 25 8 45 45 H 1.09003 * 109.46889 * 178.57541 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3371 -1.5392 1.7785 7 7 3.2543 -0.4244 1.7220 8 6 3.7429 -1.1153 2.9178 9 1 2.9141 -1.3413 3.5889 10 6 4.4841 -2.4114 2.5257 11 7 5.6137 -2.5020 3.4865 12 6 6.6789 -3.3696 2.9664 13 6 7.8409 -3.3686 3.9260 14 8 7.7457 -2.8001 4.9932 15 7 8.9860 -3.9994 3.5983 16 6 10.0433 -3.9980 4.4711 17 1 9.9585 -3.4918 5.4213 18 6 11.2236 -4.6489 4.1335 19 7 12.2369 -4.6480 4.9703 20 14 11.3701 -5.5251 2.4903 21 1 11.8908 -4.5800 1.4701 22 1 12.3024 -6.6733 2.6230 23 1 10.0335 -6.0185 2.0716 24 6 6.0889 -1.0998 3.6275 25 6 4.7981 -0.2532 3.6412 26 6 5.0166 1.0612 2.8891 27 6 4.3606 0.0255 5.0805 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.8103 0.2388 1.2838 32 1 3.8251 -3.2731 2.6315 33 1 4.8567 -2.3420 1.5037 34 1 6.2991 -4.3854 2.8567 35 1 7.0087 -2.9982 1.9961 36 1 9.0623 -4.4538 2.7448 37 1 13.0610 -5.1021 4.7345 38 1 6.7154 -0.8241 2.7792 39 1 6.6358 -0.9741 4.5620 40 1 5.7820 1.6476 3.3974 41 1 5.3395 0.8475 1.8702 42 1 4.0839 1.6248 2.8640 43 1 3.4223 0.5803 5.0742 44 1 4.2208 -0.9185 5.6071 45 1 5.1269 0.6134 5.5858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330171901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:59 Heat of formation + Delta-G solvation = -176.190268 kcal Electronic energy + Delta-G solvation = -29858.236478 eV Core-core repulsion = 25353.057604 eV Total energy + Delta-G solvation = -4505.178874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.31943 -48.31695 -41.74515 -40.51138 -39.54955 -36.33600 -35.72137 -34.53896 -33.74419 -32.62215 -30.67999 -28.73616 -28.37133 -26.84845 -26.16220 -24.70145 -22.64751 -21.74808 -21.27962 -20.53118 -20.23300 -19.56381 -18.87982 -17.97673 -17.62607 -17.15036 -16.91060 -16.68786 -16.45543 -16.17097 -15.73119 -15.49845 -15.17282 -15.13894 -14.91322 -14.65045 -14.62935 -14.52062 -14.38358 -14.09712 -13.93996 -13.56801 -13.53284 -13.38139 -13.27823 -13.08598 -13.07146 -12.96950 -12.67792 -12.45758 -12.38416 -11.99899 -11.95968 -11.82478 -11.57575 -11.47469 -11.19602 -10.49229 -10.32556 -10.24871 -9.45837 -8.41956 -6.02485 0.92692 1.29397 1.33761 1.41902 1.43244 1.93274 2.21744 2.49795 2.69075 2.89239 3.13806 3.16230 3.30466 3.42063 3.44377 3.52676 3.82377 4.05390 4.15184 4.17242 4.25450 4.30017 4.43952 4.51824 4.58310 4.60058 4.62423 4.71952 4.80253 4.82007 4.91010 4.97258 4.99663 5.13054 5.17114 5.28607 5.37889 5.51321 5.79567 5.83961 5.97537 6.05052 6.58456 6.67037 6.87440 7.38391 7.94896 8.75526 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002657 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.464209 B =10535.687136 C =11232.589662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.284 3.716 3 F -0.187 7.187 4 F -0.188 7.188 5 C 0.484 3.516 6 O -0.527 6.527 7 N -0.694 5.694 8 C 0.154 3.846 9 H 0.099 0.901 10 C 0.025 3.975 11 N -0.503 5.503 12 C 0.042 3.958 13 C 0.452 3.548 14 O -0.602 6.602 15 N -0.592 5.592 16 C -0.325 4.325 17 H 0.057 0.943 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.233 1.233 24 C 0.044 3.956 25 C -0.067 4.067 26 C -0.144 4.144 27 C -0.130 4.130 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.418 0.582 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.388 0.612 37 H 0.279 0.721 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.344 11.366 -15.971 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.245 3.755 3 F -0.168 7.168 4 F -0.169 7.169 5 C 0.265 3.735 6 O -0.402 6.402 7 N -0.349 5.349 8 C 0.049 3.951 9 H 0.117 0.883 10 C -0.104 4.104 11 N -0.227 5.227 12 C -0.089 4.089 13 C 0.240 3.760 14 O -0.486 6.486 15 N -0.234 5.234 16 C -0.454 4.454 17 H 0.075 0.925 18 C -0.213 4.213 19 N -0.574 5.574 20 Si 0.783 3.217 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.156 1.156 24 C -0.084 4.084 25 C -0.068 4.068 26 C -0.202 4.202 27 C -0.187 4.187 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.817 10.881 -14.312 29.841 hybrid contribution 1.664 -0.159 -1.296 2.115 sum -22.153 10.722 -15.608 29.144 Atomic orbital electron populations 1.22706 0.86828 1.07175 1.07193 1.21425 0.97131 0.75263 0.81694 1.93074 1.90598 1.36498 1.96600 1.93091 1.90735 1.80968 1.52091 1.21114 0.82653 0.83637 0.86076 1.90792 1.56790 1.33265 1.59400 1.46323 1.16669 1.42620 1.29287 1.21733 0.96826 0.90802 0.85749 0.88268 1.23555 0.93251 0.98746 0.94852 1.65131 1.06887 1.08493 1.42192 1.22055 0.90410 1.01083 0.95379 1.20704 0.84244 0.82142 0.88917 1.90532 1.82969 1.48122 1.26933 1.42035 1.12477 1.50272 1.18578 1.18986 0.92011 1.34040 1.00389 0.92491 1.26084 0.94114 0.98030 1.03101 1.69803 1.04879 1.44238 1.38522 0.85393 0.80289 0.78665 0.77373 1.18121 1.20068 1.15647 1.23299 0.96148 0.87277 1.01637 1.21523 0.92881 0.95410 0.97016 1.21901 1.03354 0.95100 0.99843 1.21768 1.01549 1.01606 0.93795 0.87917 0.87100 0.88272 0.74114 0.89327 0.92067 0.86441 0.90208 0.77613 0.91164 0.93736 0.91149 0.91213 0.91511 0.90184 0.90975 0.93330 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.92 71.98 0.64 -1.10 16 2 C 0.28 4.04 2.47 29.85 0.07 4.12 16 3 F -0.19 -2.51 16.51 44.97 0.74 -1.77 16 4 F -0.19 -3.13 17.05 44.97 0.77 -2.37 16 5 C 0.48 8.83 7.23 87.66 0.63 9.47 16 6 O -0.53 -12.62 15.74 -3.02 -0.05 -12.66 16 7 N -0.69 -11.48 4.48 -438.30 -1.96 -13.44 16 8 C 0.15 3.18 3.03 45.89 0.14 3.32 16 9 H 0.10 2.29 7.13 -2.38 -0.02 2.28 16 10 C 0.02 0.57 6.21 86.45 0.54 1.11 16 11 N -0.50 -15.24 5.18 -885.59 -4.59 -19.83 16 12 C 0.04 1.32 5.39 85.55 0.46 1.78 16 13 C 0.45 20.31 7.43 87.66 0.65 20.96 16 14 O -0.60 -32.72 14.01 -3.07 -0.04 -32.76 16 15 N -0.59 -27.80 5.09 -306.98 -1.56 -29.36 16 16 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 17 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 18 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 19 N -0.93 -56.19 13.96 21.66 0.30 -55.89 16 20 Si 0.96 38.75 27.74 68.60 1.90 40.65 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 24 C 0.04 1.30 4.68 86.42 0.40 1.71 16 25 C -0.07 -1.43 1.03 -51.28 -0.05 -1.48 16 26 C -0.14 -2.21 7.11 71.98 0.51 -1.70 16 27 C -0.13 -2.86 8.23 71.98 0.59 -2.27 16 28 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 1.05 7.87 -2.39 -0.02 1.03 16 31 H 0.42 5.46 5.44 -92.71 -0.50 4.95 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.26 7.84 -2.39 -0.02 1.24 16 34 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.08 2.05 7.98 -2.38 -0.02 2.03 16 36 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 37 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 38 H 0.04 1.25 7.67 -2.39 -0.02 1.23 16 39 H 0.07 2.69 6.26 -2.39 -0.01 2.67 16 40 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.07 0.87 6.87 -2.39 -0.02 0.85 16 42 H 0.08 0.97 7.83 -2.39 -0.02 0.96 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -76.07 369.35 1.36 -74.72 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.07 Total: 35.23 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 5.91 Total: 17.49 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -7.81 Total: -118.52 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.09 Total: -45.43 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.51 Total: -4.14 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.90 Total: 40.65 kcal Total: -76.07 1.36 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330171901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.474 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds