Wall clock time and date at job start Tue Mar 31 2020 17:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89739 * 2 1 4 4 N 1.40086 * 108.20700 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52999 * 109.47451 * 270.28570 * 17 16 14 19 19 C 1.50695 * 109.46918 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00539 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99639 * 179.97438 * 19 18 17 22 22 N 1.40101 * 120.00003 * 179.97438 * 21 19 18 23 23 C 1.39607 * 120.00142 * 180.02562 * 22 21 19 24 24 N 1.33651 * 125.61012 * 180.02562 * 23 22 21 25 25 C 1.30889 * 109.76631 * 179.97438 * 24 23 22 26 26 N 1.34338 * 108.21449 * 359.97438 * 25 24 23 27 27 H 0.96998 * 126.76409 * 179.97438 * 26 25 24 28 28 N 1.31204 * 125.60782 * 359.69768 * 23 22 21 29 29 H 1.08999 * 109.46544 * 90.02549 * 1 2 3 30 30 H 1.09000 * 109.47294 * 210.02512 * 1 2 3 31 31 H 1.08993 * 109.46794 * 330.02928 * 1 2 3 32 32 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 33 33 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 36 36 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 37 37 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 38 38 H 1.09001 * 109.46924 * 30.28937 * 17 16 14 39 39 H 1.09002 * 109.46528 * 150.28490 * 17 16 14 40 40 H 1.08997 * 109.46981 * 300.00397 * 18 17 16 41 41 H 1.09000 * 109.46794 * 59.99860 * 18 17 16 42 42 H 0.97005 * 120.00193 * 0.02562 * 21 19 18 43 43 H 0.96998 * 120.00049 * 0.02562 * 22 21 19 44 44 H 1.08004 * 125.88849 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7984 1.4210 7 1 4.6294 1.3832 2.2421 8 6 6.2914 2.5957 1.6727 9 7 6.9803 3.1011 0.6729 10 14 6.7979 2.9583 3.4337 11 1 7.1128 1.6852 4.1303 12 1 7.9981 3.8329 3.4334 13 1 5.6854 3.6456 4.1374 14 6 3.6142 -0.7153 -0.0050 15 6 4.8352 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0006 17 6 1.8600 -2.5658 0.0008 18 6 1.7017 -3.0508 -1.4416 19 6 1.2340 -4.4834 -1.4413 20 8 1.0461 -5.0598 -0.3910 21 7 1.0243 -5.1240 -2.6085 22 7 0.5900 -6.4560 -2.6083 23 6 0.3734 -7.1197 -3.8172 24 7 -0.0395 -8.3842 -3.9477 25 6 -0.1393 -8.6885 -5.2168 26 7 0.2120 -7.6098 -5.9362 27 1 0.2349 -7.5392 -6.9033 28 7 0.5358 -6.6030 -5.0122 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.5563 2.4332 -0.5138 33 1 5.6093 0.9981 -0.5134 34 1 7.7514 3.6623 0.8499 35 1 5.1321 -1.8165 1.0139 36 1 4.6063 -2.5306 -0.5295 37 1 5.6498 -1.0886 -0.5258 38 1 2.5935 -3.1870 0.5147 39 1 0.9012 -2.6352 0.5147 40 1 0.9682 -2.4295 -1.9554 41 1 2.6605 -2.9813 -1.9555 42 1 1.1749 -4.6631 -3.4486 43 1 0.4398 -6.9170 -1.7682 44 1 -0.4512 -9.6421 -5.6165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343972389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:39 Heat of formation + Delta-G solvation = 153.480459 kcal Electronic energy + Delta-G solvation = -27174.124052 eV Core-core repulsion = 23166.222711 eV Total energy + Delta-G solvation = -4007.901341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41599 -40.64698 -39.85834 -36.43184 -34.41562 -33.46305 -33.08281 -32.48726 -31.80726 -30.53643 -29.46400 -28.94560 -26.69042 -25.87431 -24.08864 -23.18586 -22.21632 -21.90662 -20.72344 -18.92136 -18.83022 -18.66123 -17.80047 -17.41141 -16.70414 -16.15869 -15.74805 -15.61335 -15.32281 -15.10744 -14.58810 -14.38190 -14.00719 -13.81945 -13.10403 -12.97082 -12.79328 -12.50447 -12.48748 -12.40321 -12.26276 -12.15285 -11.79799 -11.66327 -11.34330 -11.27678 -10.99186 -10.79076 -10.75285 -10.53973 -10.48552 -10.27100 -10.20075 -10.15912 -9.75299 -9.61670 -8.64387 -8.18781 -8.03642 -7.49397 -6.26467 -4.33751 1.24751 1.38867 2.32292 2.37139 2.71231 2.76353 3.23319 3.27061 3.30903 3.33972 3.59108 3.66231 4.11274 4.29682 4.48565 4.67620 5.07045 5.14213 5.19386 5.32389 5.36551 5.44718 5.64339 5.69517 5.76908 5.80876 5.94390 5.95159 6.01538 6.05187 6.23666 6.36715 6.41726 6.43631 6.53729 6.60684 6.84152 6.87876 7.02683 7.11446 7.31571 7.50826 7.66098 7.71811 7.88237 8.05124 8.18035 8.66361 8.75140 9.32610 10.81092 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.001939 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.033666 B =14438.276289 C =14744.899174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.095 3.905 15 C -0.087 4.087 16 C -0.270 4.270 17 C -0.010 4.010 18 C -0.121 4.121 19 C 0.515 3.485 20 O -0.538 6.538 21 N -0.515 5.515 22 N -0.498 5.498 23 C 0.483 3.517 24 N -0.566 5.566 25 C 0.292 3.708 26 N -0.482 5.482 27 H 0.444 0.556 28 N -0.371 5.371 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.427 0.573 43 H 0.448 0.552 44 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 -21.702 -14.340 28.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.037 4.037 15 C -0.145 4.145 16 C -0.282 4.282 17 C -0.049 4.049 18 C -0.162 4.162 19 C 0.302 3.698 20 O -0.412 6.412 21 N -0.264 5.264 22 N -0.240 5.240 23 C 0.112 3.888 24 N -0.301 5.301 25 C -0.008 4.008 26 N -0.201 5.201 27 H 0.289 0.711 28 N -0.213 5.213 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.268 0.732 43 H 0.294 0.706 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.285 -19.927 -13.429 26.988 hybrid contribution 0.399 -0.697 -0.001 0.803 sum -11.887 -20.623 -13.430 27.331 Atomic orbital electron populations 1.20036 0.88027 1.02479 1.01851 1.21951 0.96123 0.90750 1.02468 1.77284 0.87486 1.22662 1.24619 1.49248 1.05789 1.04200 1.51126 1.19653 0.77970 0.89541 0.98918 1.21266 1.12865 1.31961 0.91337 0.91840 1.24928 0.95707 0.95016 0.98134 1.69911 1.18928 1.33076 1.31081 0.86409 0.78020 0.78487 0.83744 1.19932 1.20952 1.19954 1.20793 0.96114 0.85701 1.01051 1.20363 0.93760 0.97154 1.03231 1.19295 0.91353 0.94915 1.22687 1.19400 1.01909 0.91031 0.92528 1.21725 1.03429 0.89004 1.02091 1.21423 0.77231 0.89273 0.81862 1.90727 1.51642 1.68085 1.30735 1.45028 1.69248 1.01266 1.10859 1.41722 1.75851 1.02629 1.03770 1.20065 0.94675 0.87810 0.86209 1.70206 1.27767 1.13338 1.18804 1.25937 0.94149 0.94481 0.86228 1.47654 1.53394 1.08918 1.10107 0.71053 1.78137 1.34660 1.11425 0.97042 0.91555 0.91187 0.91569 0.93074 0.93077 0.92210 0.90409 0.91037 0.90911 0.91132 0.90996 0.88325 0.88405 0.73161 0.70578 0.75702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 0.96 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.75 12.58 33.67 0.42 -6.32 16 4 N -0.32 -7.48 3.60 -58.31 -0.21 -7.69 16 5 C 0.26 6.55 6.00 -5.20 -0.03 6.52 16 6 C -0.54 -14.79 9.39 -34.44 -0.32 -15.12 16 7 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 10 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.10 1.85 6.93 -82.26 -0.57 1.28 16 15 C -0.09 -1.40 9.72 36.01 0.35 -1.05 16 16 C -0.27 -4.68 5.35 -105.05 -0.56 -5.25 16 17 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 18 C -0.12 -1.29 5.68 -27.89 -0.16 -1.44 16 19 C 0.51 5.92 7.95 -10.99 -0.09 5.83 16 20 O -0.54 -7.96 15.82 5.56 0.09 -7.87 16 21 N -0.52 -5.14 6.32 31.22 0.20 -4.94 16 22 N -0.50 -5.33 6.47 30.00 0.19 -5.14 16 23 C 0.48 5.04 9.08 -321.17 -2.92 2.12 16 24 N -0.57 -5.17 11.21 -14.98 -0.17 -5.34 16 25 C 0.29 1.36 13.12 -90.69 -1.19 0.17 16 26 N -0.48 -2.45 7.43 29.52 0.22 -2.23 16 27 H 0.44 0.58 8.96 -182.34 -1.63 -1.05 16 28 N -0.37 -3.51 12.32 29.99 0.37 -3.14 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.85 7.26 -51.93 -0.38 0.47 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.29 7.04 -51.93 -0.37 0.92 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 37 H 0.07 1.20 7.07 -51.93 -0.37 0.84 16 38 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 39 H 0.07 0.99 7.21 -51.93 -0.37 0.61 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.43 3.57 8.31 -182.59 -1.52 2.06 16 43 H 0.45 4.91 8.13 -182.60 -1.48 3.42 16 44 H 0.23 -0.20 8.06 -52.48 -0.42 -0.62 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -36.38 383.02 -12.77 -49.15 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -9.43 Total: 1.57 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -5.94 Total: -5.66 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 1.76 Total: -59.17 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.38 -12.77 -49.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343972389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.631 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds