Wall clock time and date at job start Tue Mar 31 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89739 * 2 1 4 4 N 1.40086 * 108.20700 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52999 * 109.47451 * 270.28570 * 17 16 14 19 19 C 1.50695 * 109.46918 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00539 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99639 * 179.97438 * 19 18 17 22 22 N 1.40101 * 120.00003 * 179.97438 * 21 19 18 23 23 C 1.39607 * 120.00142 * 180.02562 * 22 21 19 24 24 N 1.33651 * 125.61012 * 180.02562 * 23 22 21 25 25 C 1.30889 * 109.76631 * 179.97438 * 24 23 22 26 26 N 1.34338 * 108.21449 * 359.97438 * 25 24 23 27 27 H 0.96998 * 126.76409 * 179.97438 * 26 25 24 28 28 N 1.31204 * 125.60782 * 359.69768 * 23 22 21 29 29 H 1.08999 * 109.46544 * 90.02549 * 1 2 3 30 30 H 1.09000 * 109.47294 * 210.02512 * 1 2 3 31 31 H 1.08993 * 109.46794 * 330.02928 * 1 2 3 32 32 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 33 33 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 36 36 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 37 37 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 38 38 H 1.09001 * 109.46924 * 30.28937 * 17 16 14 39 39 H 1.09002 * 109.46528 * 150.28490 * 17 16 14 40 40 H 1.08997 * 109.46981 * 300.00397 * 18 17 16 41 41 H 1.09000 * 109.46794 * 59.99860 * 18 17 16 42 42 H 0.97005 * 120.00193 * 0.02562 * 21 19 18 43 43 H 0.96998 * 120.00049 * 0.02562 * 22 21 19 44 44 H 1.08004 * 125.88849 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7984 1.4210 7 1 4.6294 1.3832 2.2421 8 6 6.2914 2.5957 1.6727 9 7 6.9803 3.1011 0.6729 10 14 6.7979 2.9583 3.4337 11 1 7.1128 1.6852 4.1303 12 1 7.9981 3.8329 3.4334 13 1 5.6854 3.6456 4.1374 14 6 3.6142 -0.7153 -0.0050 15 6 4.8352 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0006 17 6 1.8600 -2.5658 0.0008 18 6 1.7017 -3.0508 -1.4416 19 6 1.2340 -4.4834 -1.4413 20 8 1.0461 -5.0598 -0.3910 21 7 1.0243 -5.1240 -2.6085 22 7 0.5900 -6.4560 -2.6083 23 6 0.3734 -7.1197 -3.8172 24 7 -0.0395 -8.3842 -3.9477 25 6 -0.1393 -8.6885 -5.2168 26 7 0.2120 -7.6098 -5.9362 27 1 0.2349 -7.5392 -6.9033 28 7 0.5358 -6.6030 -5.0122 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.5563 2.4332 -0.5138 33 1 5.6093 0.9981 -0.5134 34 1 7.7514 3.6623 0.8499 35 1 5.1321 -1.8165 1.0139 36 1 4.6063 -2.5306 -0.5295 37 1 5.6498 -1.0886 -0.5258 38 1 2.5935 -3.1870 0.5147 39 1 0.9012 -2.6352 0.5147 40 1 0.9682 -2.4295 -1.9554 41 1 2.6605 -2.9813 -1.9555 42 1 1.1749 -4.6631 -3.4486 43 1 0.4398 -6.9170 -1.7682 44 1 -0.4512 -9.6421 -5.6165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343972389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:38 Heat of formation + Delta-G solvation = 130.154986 kcal Electronic energy + Delta-G solvation = -27175.135521 eV Core-core repulsion = 23166.222711 eV Total energy + Delta-G solvation = -4008.912810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.94740 -42.13742 -40.79452 -37.24057 -36.07069 -34.87211 -34.18032 -33.74116 -32.51185 -31.71134 -30.61620 -30.18435 -27.97424 -27.59465 -25.39628 -24.12616 -23.50177 -22.60385 -21.56354 -20.29208 -20.12807 -19.43756 -18.81058 -18.56137 -18.21630 -17.27724 -16.85262 -16.39138 -16.37966 -16.24469 -15.93379 -15.52676 -15.12792 -14.92508 -14.63681 -14.38623 -14.13027 -13.92867 -13.64906 -13.39045 -13.28998 -13.19020 -13.07191 -13.02913 -12.84052 -12.75667 -12.62921 -12.56439 -12.21229 -11.85033 -11.71837 -11.20645 -11.13636 -11.08599 -11.01094 -10.84684 -10.74644 -9.81856 -9.01612 -8.77531 -8.34416 -6.51995 0.65507 0.77696 1.20309 1.36380 1.37821 1.46876 1.54147 1.89095 1.96042 1.99497 2.07981 2.33485 2.95000 3.01000 3.65366 3.70052 3.90301 3.96667 4.22038 4.24104 4.29944 4.36750 4.58864 4.65747 4.69768 4.74865 4.85695 4.89162 4.89855 4.92611 4.97529 5.07104 5.16978 5.21647 5.34629 5.46239 5.51147 5.58279 5.72928 5.81040 6.05276 6.09066 6.33297 6.36350 6.61134 6.63100 7.05181 7.14115 7.19218 7.43024 8.71292 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.001939 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.033666 B =14438.276289 C =14744.899174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.055 3.945 3 N -0.351 5.351 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.047 0.953 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.272 1.272 13 H -0.276 1.276 14 C 0.079 3.921 15 C -0.084 4.084 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.112 4.112 19 C 0.521 3.479 20 O -0.574 6.574 21 N -0.503 5.503 22 N -0.507 5.507 23 C 0.466 3.534 24 N -0.604 5.604 25 C 0.309 3.691 26 N -0.471 5.471 27 H 0.460 0.540 28 N -0.397 5.397 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.273 0.727 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.435 0.565 43 H 0.444 0.556 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 -23.961 -15.261 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.175 5.175 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.196 1.196 13 H -0.202 1.202 14 C -0.051 4.051 15 C -0.142 4.142 16 C -0.268 4.268 17 C -0.043 4.043 18 C -0.153 4.153 19 C 0.309 3.691 20 O -0.451 6.451 21 N -0.251 5.251 22 N -0.249 5.249 23 C 0.095 3.905 24 N -0.340 5.340 25 C 0.011 3.989 26 N -0.192 5.192 27 H 0.310 0.690 28 N -0.239 5.239 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.278 0.722 43 H 0.289 0.711 44 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -13.321 -22.208 -14.439 29.650 hybrid contribution 0.597 -0.123 0.140 0.625 sum -12.724 -22.332 -14.299 29.412 Atomic orbital electron populations 1.20226 0.84685 1.03481 1.03835 1.22791 0.98121 0.90201 0.99853 1.77220 0.87796 1.25075 1.27368 1.48989 1.05314 1.05175 1.54032 1.19118 0.79091 0.88760 0.97474 1.21408 1.13248 1.32601 0.91883 0.93453 1.25742 0.95461 0.94494 1.02231 1.69996 1.19265 1.33335 1.33011 0.85428 0.77783 0.78672 0.78743 1.19000 1.19631 1.20168 1.21476 0.98218 0.84661 1.00703 1.20458 0.92270 0.97982 1.03485 1.19656 0.90253 0.96399 1.20536 1.19373 1.01783 0.88413 0.94707 1.21600 1.04866 0.88661 1.00203 1.21408 0.76788 0.89352 0.81586 1.90719 1.53517 1.68894 1.32006 1.44868 1.68184 1.01254 1.10835 1.41766 1.76379 1.02691 1.04054 1.20246 0.95526 0.88517 0.86206 1.70203 1.29355 1.13144 1.21326 1.26941 0.91534 0.95549 0.84891 1.47604 1.52673 1.08248 1.10658 0.69049 1.78014 1.35164 1.13375 0.97336 0.88977 0.88875 0.91838 0.96323 0.93476 0.91751 0.90606 0.87332 0.91916 0.91417 0.90630 0.86429 0.86944 0.72199 0.71080 0.70488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.26 71.24 0.73 -0.92 16 2 C 0.06 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -16.35 12.58 -47.38 -0.60 -16.95 16 4 N -0.36 -16.94 3.60 -338.41 -1.22 -18.16 16 5 C 0.27 14.74 6.00 85.64 0.51 15.26 16 6 C -0.55 -31.61 9.39 25.60 0.24 -31.37 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.21 5.46 84.66 0.46 1.67 16 9 N -0.92 -52.61 13.29 21.45 0.28 -52.32 16 10 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 14 C 0.08 3.09 6.93 41.41 0.29 3.37 16 15 C -0.08 -2.66 9.72 71.24 0.69 -1.97 16 16 C -0.26 -8.61 5.35 -20.14 -0.11 -8.72 16 17 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 18 C -0.11 -2.10 5.68 29.85 0.17 -1.93 16 19 C 0.52 11.10 7.95 87.65 0.70 11.80 16 20 O -0.57 -16.41 15.82 -3.01 -0.05 -16.46 16 21 N -0.50 -9.37 6.32 -173.54 -1.10 -10.46 16 22 N -0.51 -10.54 6.47 -59.01 -0.38 -10.92 16 23 C 0.47 9.25 9.08 260.91 2.37 11.62 16 24 N -0.60 -10.11 11.21 -201.31 -2.26 -12.37 16 25 C 0.31 1.98 13.12 180.37 2.37 4.35 16 26 N -0.47 -3.63 7.43 -60.51 -0.45 -4.08 16 27 H 0.46 -0.05 8.96 -213.11 -1.91 -1.96 16 28 N -0.40 -6.91 12.32 -59.03 -0.73 -7.64 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.98 7.26 -2.39 -0.02 1.96 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.05 2.50 7.04 -2.39 -0.02 2.49 16 34 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.11 2.56 7.79 -2.38 -0.02 2.54 16 37 H 0.06 2.10 7.07 -2.39 -0.02 2.08 16 38 H 0.07 1.79 7.75 -2.39 -0.02 1.77 16 39 H 0.08 1.89 7.21 -2.39 -0.02 1.88 16 40 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.44 6.58 8.31 -213.31 -1.77 4.80 16 43 H 0.44 9.72 8.13 -213.32 -1.73 7.98 16 44 H 0.28 -1.76 8.06 -2.91 -0.02 -1.78 16 Total: -1.00 -82.57 383.02 0.07 -82.50 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -4.33 Total: 15.49 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 8.86 Total: 5.52 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -6.44 Total: -132.90 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.57 0.07 -82.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343972389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.657 kcal (2) G-P(sol) polarization free energy of solvation -82.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds