Wall clock time and date at job start Tue Mar 31 2020 19:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47265 * 140.38582 * 4 3 2 6 6 H 1.09005 * 109.47331 * 305.00447 * 5 4 3 7 7 C 1.52998 * 109.47363 * 185.00088 * 5 4 3 8 8 O 1.42896 * 109.47132 * 304.99974 * 7 5 4 9 9 N 1.46906 * 109.47221 * 65.00022 * 5 4 3 10 10 C 1.46893 * 111.00399 * 205.00293 * 9 5 4 11 11 C 1.53001 * 109.47267 * 179.97438 * 10 9 5 12 12 H 1.09007 * 109.46851 * 59.99793 * 11 10 9 13 13 O 1.42898 * 109.47271 * 300.00164 * 11 10 9 14 14 C 1.52999 * 109.47264 * 179.97438 * 11 10 9 15 15 O 1.42902 * 109.47446 * 185.00059 * 14 11 10 16 16 C 1.35662 * 117.00094 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.82200 * 359.72793 * 16 15 14 18 18 C 1.36439 * 120.18928 * 179.76305 * 17 16 15 19 19 C 1.40832 * 119.80802 * 0.50732 * 18 17 16 20 20 C 1.41214 * 120.17942 * 179.72266 * 19 18 17 21 21 H 1.08000 * 120.00124 * 24.57041 * 20 19 18 22 22 C 1.39895 * 120.00127 * 204.57547 * 20 19 18 23 23 N 1.30878 * 120.00059 * 17.92470 * 22 20 19 24 24 Si 1.86804 * 119.99803 * 197.93323 * 22 20 19 25 25 H 1.48501 * 109.47055 * 89.99780 * 24 22 20 26 26 H 1.48495 * 109.46893 * 209.99400 * 24 22 20 27 27 H 1.48497 * 109.47204 * 329.99574 * 24 22 20 28 28 C 1.40831 * 119.64488 * 359.74480 * 19 18 17 29 29 C 1.36437 * 119.81007 * 359.97438 * 28 19 18 30 30 H 1.09001 * 109.47015 * 219.61688 * 1 2 3 31 31 H 1.09008 * 109.46913 * 339.61242 * 1 2 3 32 32 H 1.08999 * 109.47051 * 99.61031 * 1 2 3 33 33 H 1.08997 * 109.47343 * 20.39055 * 4 3 2 34 34 H 1.08997 * 109.47464 * 260.38644 * 4 3 2 35 35 H 1.08994 * 109.47425 * 65.00184 * 7 5 4 36 36 H 1.09004 * 109.47387 * 185.00337 * 7 5 4 37 37 H 0.96708 * 114.00148 * 179.97438 * 8 7 5 38 38 H 1.00904 * 110.99719 * 81.03984 * 9 5 4 39 39 H 1.09004 * 109.47242 * 299.99606 * 10 9 5 40 40 H 1.08998 * 109.47149 * 59.99804 * 10 9 5 41 41 H 0.96703 * 113.99521 * 299.99482 * 13 11 10 42 42 H 1.08997 * 109.47405 * 305.00329 * 14 11 10 43 43 H 1.09002 * 109.46833 * 65.00174 * 14 11 10 44 44 H 1.08005 * 119.90516 * 0.02562 * 17 16 15 45 45 H 1.07997 * 120.09944 * 180.25176 * 18 17 16 46 46 H 0.97004 * 120.00194 * 179.97438 * 23 22 20 47 47 H 1.08000 * 120.10216 * 179.97438 * 28 19 18 48 48 H 1.08005 * 119.90900 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6270 1.1135 -0.9197 6 1 4.1925 0.9917 -1.9120 7 6 6.1519 1.0361 -1.0178 8 8 6.7164 1.0791 0.2943 9 7 4.2372 2.4195 -0.3715 10 6 4.1575 3.4330 -1.4318 11 6 3.7493 4.7763 -0.8237 12 1 4.4906 5.0809 -0.0849 13 8 2.4738 4.6457 -0.1927 14 6 3.6668 5.8321 -1.9280 15 8 3.4000 7.1099 -1.3465 16 6 3.2952 8.1630 -2.1952 17 6 3.4530 7.9670 -3.5654 18 6 3.3443 9.0200 -4.4261 19 6 3.0824 10.3098 -3.9249 20 6 2.9742 11.4062 -4.8082 21 1 2.6958 11.2438 -5.8390 22 6 3.2276 12.7028 -4.3481 23 7 3.8908 12.8840 -3.2344 24 14 2.6193 14.1755 -5.3232 25 1 1.2568 14.5454 -4.8627 26 1 3.5402 15.3216 -5.1150 27 1 2.5772 13.8301 -6.7668 28 6 2.9295 10.5003 -2.5379 29 6 3.0354 9.4357 -1.6913 30 1 -0.3633 -0.7916 0.6553 31 1 -0.3633 0.9634 0.3580 32 1 -0.3633 -0.1716 -1.0132 33 1 4.4822 -0.9611 -0.3580 34 1 4.4812 0.1738 1.0132 35 1 6.4378 0.1045 -1.5060 36 1 6.5219 1.8800 -1.6002 37 1 7.6823 1.0337 0.3086 38 1 4.8709 2.7089 0.3585 39 1 5.1303 3.5325 -1.9134 40 1 3.4159 3.1286 -2.1704 41 1 1.7643 4.3764 -0.7921 42 1 4.6134 5.8688 -2.4671 43 1 2.8649 5.5729 -2.6192 44 1 3.6577 6.9779 -3.9478 45 1 3.4628 8.8657 -5.4884 46 1 4.0669 13.7831 -2.9156 47 1 2.7289 11.4863 -2.1455 48 1 2.9188 9.5801 -0.6273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346286755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:56 Heat of formation + Delta-G solvation = -78.827849 kcal Electronic energy + Delta-G solvation = -27272.049985 eV Core-core repulsion = 23293.029841 eV Total energy + Delta-G solvation = -3979.020144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.24921 -38.66040 -37.35026 -36.10729 -35.53165 -34.11992 -33.31152 -31.91509 -30.20153 -29.43948 -28.96928 -28.21074 -25.97516 -25.23667 -24.31107 -22.00178 -21.27175 -20.65024 -20.51091 -18.15874 -17.35549 -17.14131 -16.88854 -16.52183 -16.10871 -15.69835 -15.30165 -15.19523 -14.70555 -14.48713 -14.28097 -14.06215 -13.94876 -13.78515 -13.61901 -13.39373 -13.31677 -12.91697 -12.56577 -12.42577 -12.23853 -12.13396 -11.90848 -11.79291 -11.74268 -11.37642 -11.15227 -10.93801 -10.77103 -10.61285 -10.56187 -9.99666 -9.91770 -9.82064 -9.73235 -9.67999 -9.32843 -9.02430 -8.58583 -7.64310 -7.03050 -6.72180 -4.25528 2.69921 2.76478 2.77890 2.95040 3.08602 3.11816 3.21627 3.47167 3.81175 3.95175 4.13352 4.28828 4.51519 4.60628 4.62317 4.68073 4.86943 4.91217 5.02713 5.07241 5.16609 5.23867 5.34259 5.38106 5.43702 5.46486 5.51612 5.58987 5.62325 5.67271 5.76136 5.90325 6.04873 6.05915 6.23082 6.70098 6.74843 6.97720 7.10887 7.11555 7.18435 7.19260 7.46718 7.55829 7.70157 7.78881 7.81169 8.00709 8.20604 8.45759 8.65662 8.89956 8.98917 10.22238 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.001848 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.433142 B =15150.007774 C =15833.576182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.202 4.202 3 C -0.168 4.168 4 C 0.012 3.988 5 C 0.095 3.905 6 H 0.090 0.910 7 C 0.042 3.958 8 O -0.568 6.568 9 N -0.665 5.665 10 C 0.030 3.970 11 C 0.116 3.884 12 H 0.102 0.898 13 O -0.538 6.538 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.008 4.008 17 C -0.168 4.168 18 C -0.199 4.199 19 C 0.087 3.913 20 C -0.464 4.464 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.799 5.799 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.263 1.263 28 C -0.133 4.133 29 C -0.119 4.119 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.382 0.618 38 H 0.353 0.647 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.370 0.630 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.280 0.720 47 H 0.126 0.874 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -23.229 3.838 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.202 4.202 3 C -0.168 4.168 4 C -0.025 4.025 5 C -0.016 4.016 6 H 0.109 0.891 7 C -0.038 4.038 8 O -0.373 6.373 9 N -0.297 5.297 10 C -0.100 4.100 11 C 0.056 3.944 12 H 0.120 0.880 13 O -0.342 6.342 14 C -0.038 4.038 15 O -0.232 6.232 16 C -0.052 4.052 17 C -0.187 4.187 18 C -0.219 4.219 19 C 0.085 3.915 20 C -0.494 4.494 21 H 0.094 0.906 22 C -0.142 4.142 23 N -0.425 5.425 24 Si 0.733 3.267 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.152 4.152 29 C -0.138 4.138 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.216 0.784 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.144 0.856 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.452 -22.942 4.865 23.497 hybrid contribution 1.260 0.614 -1.738 2.233 sum 2.712 -22.327 3.127 22.708 Atomic orbital electron populations 1.18786 0.85076 1.02913 1.02487 1.22276 0.93825 1.02225 1.01838 1.22005 0.93279 1.00435 1.01051 1.18511 0.84827 0.97475 1.01724 1.21684 0.90482 0.90595 0.98794 0.89143 1.22963 0.95598 1.00402 0.84788 1.86455 1.25684 1.97362 1.27827 1.60327 1.56430 1.00990 1.11967 1.22608 1.00476 0.92508 0.94395 1.21812 0.87426 0.90561 0.94627 0.87993 1.86636 1.17347 1.91206 1.38973 1.23105 1.00343 0.84575 0.95796 1.85890 1.88663 1.13996 1.34697 1.18627 1.11420 0.86822 0.88290 1.20387 1.07784 0.98053 0.92505 1.20551 1.10304 0.93563 0.97444 1.17599 0.89568 0.91803 0.92511 1.19461 1.41815 0.90540 0.97552 0.90559 1.25885 0.92591 1.00708 0.95061 1.69834 1.28195 1.24214 1.20239 0.86319 0.79504 0.80088 0.80819 1.19308 1.20399 1.18738 1.20988 1.03436 0.97402 0.93422 1.19854 1.05144 0.90220 0.98580 0.90748 0.90184 0.90680 0.89949 0.88826 0.92957 0.93319 0.77116 0.82685 0.94288 0.90538 0.78351 0.92670 0.92946 0.89018 0.88791 0.90915 0.85644 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.07 16 2 C -0.20 -2.27 14.13 -37.12 -0.52 -2.80 16 3 C -0.17 -1.89 13.06 -37.12 -0.48 -2.38 16 4 C 0.01 0.10 5.11 -29.52 -0.15 -0.05 16 5 C 0.09 0.77 2.39 -67.71 -0.16 0.61 16 6 H 0.09 0.71 7.80 -51.93 -0.40 0.31 16 7 C 0.04 0.26 6.72 37.16 0.25 0.51 16 8 O -0.57 -3.74 12.24 -35.23 -0.43 -4.17 16 9 N -0.67 -6.66 5.82 -106.72 -0.62 -7.28 16 10 C 0.03 0.30 5.15 -3.83 -0.02 0.28 16 11 C 0.12 1.51 3.45 -26.73 -0.09 1.41 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 O -0.54 -7.84 13.17 -40.05 -0.53 -8.36 16 14 C 0.04 0.61 4.37 37.16 0.16 0.77 16 15 O -0.32 -6.62 10.09 -23.51 -0.24 -6.86 16 16 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 17 C -0.17 -3.83 8.96 -39.83 -0.36 -4.18 16 18 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 19 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 20 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 21 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 22 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 23 N -0.80 -20.82 10.96 55.55 0.61 -20.21 16 24 Si 0.91 18.78 29.60 -169.99 -5.03 13.75 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 28 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 29 C -0.12 -2.95 9.92 -39.83 -0.40 -3.34 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.89 7.73 -51.93 -0.40 0.49 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.05 0.30 7.35 -51.93 -0.38 -0.08 16 37 H 0.38 1.02 9.12 45.56 0.42 1.43 16 38 H 0.35 3.73 7.94 -39.29 -0.31 3.42 16 39 H 0.04 0.35 7.36 -51.93 -0.38 -0.03 16 40 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.37 4.33 9.05 45.56 0.41 4.74 16 42 H 0.06 0.82 7.64 -51.93 -0.40 0.42 16 43 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 44 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 45 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 47 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 48 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -32.23 404.90 -9.42 -41.64 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.85 Total: 13.27 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -3.43 Total: -27.88 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: -0.01 Total: -27.49 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.20 Total: -19.39 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.23 -9.42 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346286755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.184 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds