Wall clock time and date at job start Tue Mar 31 2020 19:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47265 * 140.38582 * 4 3 2 6 6 H 1.09005 * 109.47331 * 305.00447 * 5 4 3 7 7 C 1.52998 * 109.47363 * 185.00088 * 5 4 3 8 8 O 1.42896 * 109.47132 * 304.99974 * 7 5 4 9 9 N 1.46906 * 109.47221 * 65.00022 * 5 4 3 10 10 C 1.46893 * 111.00399 * 205.00293 * 9 5 4 11 11 C 1.53001 * 109.47267 * 179.97438 * 10 9 5 12 12 H 1.09007 * 109.46851 * 59.99793 * 11 10 9 13 13 O 1.42898 * 109.47271 * 300.00164 * 11 10 9 14 14 C 1.52999 * 109.47264 * 179.97438 * 11 10 9 15 15 O 1.42902 * 109.47446 * 185.00059 * 14 11 10 16 16 C 1.35662 * 117.00094 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.82200 * 359.72793 * 16 15 14 18 18 C 1.36439 * 120.18928 * 179.76305 * 17 16 15 19 19 C 1.40832 * 119.80802 * 0.50732 * 18 17 16 20 20 C 1.41214 * 120.17942 * 179.72266 * 19 18 17 21 21 H 1.08000 * 120.00124 * 24.57041 * 20 19 18 22 22 C 1.39895 * 120.00127 * 204.57547 * 20 19 18 23 23 N 1.30878 * 120.00059 * 17.92470 * 22 20 19 24 24 Si 1.86804 * 119.99803 * 197.93323 * 22 20 19 25 25 H 1.48501 * 109.47055 * 89.99780 * 24 22 20 26 26 H 1.48495 * 109.46893 * 209.99400 * 24 22 20 27 27 H 1.48497 * 109.47204 * 329.99574 * 24 22 20 28 28 C 1.40831 * 119.64488 * 359.74480 * 19 18 17 29 29 C 1.36437 * 119.81007 * 359.97438 * 28 19 18 30 30 H 1.09001 * 109.47015 * 219.61688 * 1 2 3 31 31 H 1.09008 * 109.46913 * 339.61242 * 1 2 3 32 32 H 1.08999 * 109.47051 * 99.61031 * 1 2 3 33 33 H 1.08997 * 109.47343 * 20.39055 * 4 3 2 34 34 H 1.08997 * 109.47464 * 260.38644 * 4 3 2 35 35 H 1.08994 * 109.47425 * 65.00184 * 7 5 4 36 36 H 1.09004 * 109.47387 * 185.00337 * 7 5 4 37 37 H 0.96708 * 114.00148 * 179.97438 * 8 7 5 38 38 H 1.00904 * 110.99719 * 81.03984 * 9 5 4 39 39 H 1.09004 * 109.47242 * 299.99606 * 10 9 5 40 40 H 1.08998 * 109.47149 * 59.99804 * 10 9 5 41 41 H 0.96703 * 113.99521 * 299.99482 * 13 11 10 42 42 H 1.08997 * 109.47405 * 305.00329 * 14 11 10 43 43 H 1.09002 * 109.46833 * 65.00174 * 14 11 10 44 44 H 1.08005 * 119.90516 * 0.02562 * 17 16 15 45 45 H 1.07997 * 120.09944 * 180.25176 * 18 17 16 46 46 H 0.97004 * 120.00194 * 179.97438 * 23 22 20 47 47 H 1.08000 * 120.10216 * 179.97438 * 28 19 18 48 48 H 1.08005 * 119.90900 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6270 1.1135 -0.9197 6 1 4.1925 0.9917 -1.9120 7 6 6.1519 1.0361 -1.0178 8 8 6.7164 1.0791 0.2943 9 7 4.2372 2.4195 -0.3715 10 6 4.1575 3.4330 -1.4318 11 6 3.7493 4.7763 -0.8237 12 1 4.4906 5.0809 -0.0849 13 8 2.4738 4.6457 -0.1927 14 6 3.6668 5.8321 -1.9280 15 8 3.4000 7.1099 -1.3465 16 6 3.2952 8.1630 -2.1952 17 6 3.4530 7.9670 -3.5654 18 6 3.3443 9.0200 -4.4261 19 6 3.0824 10.3098 -3.9249 20 6 2.9742 11.4062 -4.8082 21 1 2.6958 11.2438 -5.8390 22 6 3.2276 12.7028 -4.3481 23 7 3.8908 12.8840 -3.2344 24 14 2.6193 14.1755 -5.3232 25 1 1.2568 14.5454 -4.8627 26 1 3.5402 15.3216 -5.1150 27 1 2.5772 13.8301 -6.7668 28 6 2.9295 10.5003 -2.5379 29 6 3.0354 9.4357 -1.6913 30 1 -0.3633 -0.7916 0.6553 31 1 -0.3633 0.9634 0.3580 32 1 -0.3633 -0.1716 -1.0132 33 1 4.4822 -0.9611 -0.3580 34 1 4.4812 0.1738 1.0132 35 1 6.4378 0.1045 -1.5060 36 1 6.5219 1.8800 -1.6002 37 1 7.6823 1.0337 0.3086 38 1 4.8709 2.7089 0.3585 39 1 5.1303 3.5325 -1.9134 40 1 3.4159 3.1286 -2.1704 41 1 1.7643 4.3764 -0.7921 42 1 4.6134 5.8688 -2.4671 43 1 2.8649 5.5729 -2.6192 44 1 3.6577 6.9779 -3.9478 45 1 3.4628 8.8657 -5.4884 46 1 4.0669 13.7831 -2.9156 47 1 2.7289 11.4863 -2.1455 48 1 2.9188 9.5801 -0.6273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346286755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:55 Heat of formation + Delta-G solvation = -102.389889 kcal Electronic energy + Delta-G solvation = -27273.071712 eV Core-core repulsion = 23293.029841 eV Total energy + Delta-G solvation = -3980.041871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.68269 -39.60295 -38.58676 -37.56487 -36.22065 -35.18753 -34.89828 -32.74171 -31.81079 -31.03599 -30.44923 -28.99966 -26.85327 -26.56847 -25.64987 -23.27552 -22.46965 -22.33655 -21.68460 -19.26176 -18.89623 -18.47991 -17.75547 -17.50035 -17.28885 -17.03990 -16.39463 -16.14333 -15.86555 -15.71914 -15.42484 -15.28772 -15.05564 -14.78352 -14.62719 -14.28690 -14.15779 -14.07387 -13.91852 -13.91495 -13.64294 -13.25754 -13.19369 -13.01440 -12.81236 -12.61237 -12.48666 -12.42152 -12.37959 -11.93543 -11.69345 -11.59844 -11.22702 -11.01046 -10.95803 -10.88595 -10.49399 -10.44687 -9.57392 -9.28635 -8.93558 -8.60127 -6.23452 0.93964 1.01595 1.39592 1.52607 1.52855 1.90264 1.96207 2.22381 2.37449 2.71867 3.11876 3.46041 3.48919 3.57953 3.69325 3.88051 3.98554 4.05312 4.08026 4.17412 4.27530 4.30273 4.35321 4.41848 4.45192 4.54463 4.64004 4.74830 4.78684 4.84979 4.86508 4.90957 4.97025 5.02469 5.06460 5.09231 5.20815 5.24287 5.27718 5.57749 5.63483 5.87440 6.04008 6.05142 6.25374 6.40091 6.55971 6.79477 6.86229 6.88018 6.91370 6.94361 7.09506 8.36479 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.001848 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.433142 B =15150.007774 C =15833.576182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.226 4.226 3 C -0.190 4.190 4 C 0.013 3.987 5 C 0.095 3.905 6 H 0.095 0.905 7 C 0.048 3.952 8 O -0.585 6.585 9 N -0.678 5.678 10 C 0.043 3.957 11 C 0.124 3.876 12 H 0.092 0.908 13 O -0.559 6.559 14 C 0.032 3.968 15 O -0.332 6.332 16 C 0.000 4.000 17 C -0.164 4.164 18 C -0.207 4.207 19 C 0.054 3.946 20 C -0.498 4.498 21 H 0.077 0.923 22 C 0.032 3.968 23 N -0.832 5.832 24 Si 0.983 3.017 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 C -0.153 4.153 29 C -0.135 4.135 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.398 0.602 38 H 0.348 0.652 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.381 0.619 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.130 0.870 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.109 0.891 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -24.735 2.723 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.226 4.226 3 C -0.190 4.190 4 C -0.024 4.024 5 C -0.015 4.015 6 H 0.113 0.887 7 C -0.031 4.031 8 O -0.394 6.394 9 N -0.310 5.310 10 C -0.087 4.087 11 C 0.064 3.936 12 H 0.109 0.891 13 O -0.365 6.365 14 C -0.045 4.045 15 O -0.248 6.248 16 C -0.044 4.044 17 C -0.183 4.183 18 C -0.227 4.227 19 C 0.052 3.948 20 C -0.528 4.528 21 H 0.095 0.905 22 C -0.182 4.182 23 N -0.458 5.458 24 Si 0.804 3.196 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.181 1.181 28 C -0.172 4.172 29 C -0.154 4.154 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.248 0.752 38 H 0.167 0.833 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.147 0.853 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.812 -24.486 3.749 24.838 hybrid contribution 1.176 0.887 -1.288 1.957 sum 2.988 -23.599 2.461 23.914 Atomic orbital electron populations 1.18944 0.83352 1.03491 1.03699 1.23165 0.95177 1.02419 1.01853 1.22731 0.94397 1.00552 1.01310 1.18599 0.83537 0.98781 1.01443 1.21709 0.92049 0.89195 0.98525 0.88739 1.22874 0.93987 1.01501 0.84768 1.86419 1.27355 1.97435 1.28185 1.60297 1.56859 1.01735 1.12112 1.22444 1.01379 0.90654 0.94206 1.21773 0.86742 0.91434 0.93669 0.89056 1.86604 1.18351 1.91375 1.40141 1.23482 1.01367 0.82521 0.97106 1.85882 1.88448 1.15307 1.35160 1.18694 1.09589 0.87178 0.88927 1.20693 1.06374 0.99273 0.91931 1.20812 1.09981 0.93371 0.98547 1.17963 0.90760 0.93182 0.92901 1.19713 1.43559 0.91719 0.97788 0.90491 1.26765 0.92050 1.03287 0.96105 1.69893 1.28878 1.25331 1.21738 0.85185 0.78928 0.76184 0.79277 1.18833 1.19406 1.18107 1.20902 1.05146 0.97314 0.93875 1.20015 1.05568 0.90936 0.98887 0.89327 0.90092 0.89337 0.88001 0.89891 0.91048 0.93034 0.75225 0.83255 0.92738 0.89754 0.77063 0.91339 0.91612 0.85272 0.87480 0.90217 0.87268 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.57 10.32 70.18 0.72 0.15 16 2 C -0.23 -4.94 14.13 31.12 0.44 -4.50 16 3 C -0.19 -4.14 13.06 31.12 0.41 -3.74 16 4 C 0.01 0.22 5.11 28.79 0.15 0.36 16 5 C 0.10 1.36 2.39 44.91 0.11 1.46 16 6 H 0.09 1.27 7.80 -2.38 -0.02 1.25 16 7 C 0.05 0.47 6.72 71.98 0.48 0.96 16 8 O -0.59 -6.62 12.24 -148.98 -1.82 -8.44 16 9 N -0.68 -12.52 5.82 -491.57 -2.86 -15.38 16 10 C 0.04 0.75 5.15 86.30 0.44 1.19 16 11 C 0.12 3.01 3.45 30.59 0.11 3.12 16 12 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 13 O -0.56 -15.66 13.17 -144.37 -1.90 -17.56 16 14 C 0.03 0.90 4.37 71.98 0.31 1.22 16 15 O -0.33 -13.45 10.09 -85.17 -0.86 -14.31 16 16 C 0.00 0.00 6.71 22.79 0.15 0.15 16 17 C -0.16 -7.19 8.96 22.11 0.20 -6.99 16 18 C -0.21 -10.18 9.74 22.48 0.22 -9.96 16 19 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 20 C -0.50 -27.10 9.04 23.40 0.21 -26.89 16 21 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 22 C 0.03 1.62 5.13 85.24 0.44 2.06 16 23 N -0.83 -44.36 10.96 21.82 0.24 -44.12 16 24 Si 0.98 38.64 29.60 68.60 2.03 40.67 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 28 C -0.15 -8.36 8.64 22.48 0.19 -8.16 16 29 C -0.14 -6.81 9.92 22.11 0.22 -6.59 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.52 7.73 -2.39 -0.02 1.51 16 35 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.05 0.49 7.35 -2.38 -0.02 0.47 16 37 H 0.40 1.33 9.12 -74.05 -0.68 0.66 16 38 H 0.35 6.97 7.94 -89.69 -0.71 6.26 16 39 H 0.05 0.81 7.36 -2.38 -0.02 0.79 16 40 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 41 H 0.38 8.41 9.05 -74.05 -0.67 7.74 16 42 H 0.07 1.81 7.64 -2.39 -0.02 1.79 16 43 H 0.07 1.73 7.66 -2.39 -0.02 1.72 16 44 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 45 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 46 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 47 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16 48 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -70.45 404.90 -1.54 -71.99 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -1.06 Total: 40.44 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 4.69 Total: -53.29 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -2.62 Total: -59.50 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -4.58 Total: -40.32 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -70.45 -1.54 -71.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346286755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.400 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds