Wall clock time and date at job start Tue Mar 31 2020 19:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47209 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47196 * 179.97438 * 134.50891 * 3 2 1 5 5 C 1.52997 * 109.47245 * 36.49665 * 4 3 2 6 6 H 1.08998 * 109.47187 * 54.99416 * 5 4 3 7 7 C 1.53000 * 109.47096 * 174.99590 * 5 4 3 8 8 O 1.42905 * 109.46976 * 55.00121 * 7 5 4 9 9 N 1.46901 * 109.47055 * 294.99879 * 5 4 3 10 10 C 1.46897 * 111.00237 * 155.00191 * 9 5 4 11 11 C 1.52995 * 109.47101 * 179.97438 * 10 9 5 12 12 H 1.09004 * 109.47161 * 304.99553 * 11 10 9 13 13 O 1.42898 * 109.47201 * 65.00242 * 11 10 9 14 14 C 1.53009 * 109.47033 * 184.99702 * 11 10 9 15 15 O 1.42898 * 109.47007 * 175.00002 * 14 11 10 16 16 C 1.35675 * 116.99955 * 180.02562 * 15 14 11 17 17 C 1.39315 * 119.81619 * 359.71560 * 16 15 14 18 18 C 1.36438 * 120.18082 * 179.76387 * 17 16 15 19 19 C 1.40827 * 119.81605 * 0.51926 * 18 17 16 20 20 C 1.41219 * 120.18207 * 179.71956 * 19 18 17 21 21 H 1.07996 * 119.99786 * 24.56650 * 20 19 18 22 22 C 1.39888 * 119.99677 * 204.56443 * 20 19 18 23 23 N 1.30879 * 120.00217 * 17.94490 * 22 20 19 24 24 Si 1.86805 * 119.99765 * 197.93913 * 22 20 19 25 25 H 1.48496 * 109.47007 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46915 * 120.00114 * 24 22 20 27 27 H 1.48501 * 109.47337 * 240.00484 * 24 22 20 28 28 C 1.40838 * 119.64010 * 359.73997 * 19 18 17 29 29 C 1.36435 * 119.81164 * 0.02562 * 28 19 18 30 30 H 1.09001 * 109.47102 * 9.00005 * 1 2 3 31 31 H 1.08997 * 109.46736 * 128.99409 * 1 2 3 32 32 H 1.08998 * 109.46768 * 248.99369 * 1 2 3 33 33 H 1.08996 * 109.47126 * 276.49145 * 4 3 2 34 34 H 1.09001 * 109.46862 * 156.49026 * 4 3 2 35 35 H 1.09002 * 109.47252 * 174.99736 * 7 5 4 36 36 H 1.08999 * 109.47435 * 294.99853 * 7 5 4 37 37 H 0.96695 * 113.99798 * 180.02562 * 8 7 5 38 38 H 1.00901 * 110.99545 * 278.95588 * 9 5 4 39 39 H 1.09000 * 109.47107 * 299.99954 * 10 9 5 40 40 H 1.09002 * 109.47263 * 59.99576 * 10 9 5 41 41 H 0.96694 * 114.00305 * 59.99630 * 13 11 10 42 42 H 1.08991 * 109.46960 * 295.00345 * 14 11 10 43 43 H 1.09002 * 109.46678 * 55.00316 * 14 11 10 44 44 H 1.07994 * 119.90621 * 0.03461 * 17 16 15 45 45 H 1.07999 * 120.08779 * 180.25989 * 18 17 16 46 46 H 0.97004 * 119.99969 * 179.97438 * 23 22 20 47 47 H 1.07994 * 120.09424 * 179.97438 * 28 19 18 48 48 H 1.07999 * 119.91010 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0016 -0.0005 5 6 4.6287 -1.1575 -0.8586 6 1 4.1936 -1.0906 -1.8557 7 6 6.1534 -1.0830 -0.9613 8 8 6.7183 -1.0535 0.3511 9 7 4.2413 -2.4324 -0.2400 10 6 4.1630 -3.5022 -1.2436 11 6 3.7585 -4.8114 -0.5629 12 1 4.4519 -5.0278 0.2498 13 8 2.4347 -4.6867 -0.0393 14 6 3.7978 -5.9504 -1.5838 15 8 3.5338 -7.1903 -0.9245 16 6 3.5325 -8.3085 -1.6929 17 6 3.7760 -8.2091 -3.0610 18 6 3.7812 -9.3293 -3.8400 19 6 3.5287 -10.5871 -3.2592 20 6 3.5263 -11.7509 -4.0592 21 1 4.0815 -11.7706 -4.9853 22 6 2.8049 -12.8781 -3.6520 23 7 1.8676 -12.7629 -2.7458 24 14 3.1791 -14.5476 -4.4018 25 1 4.2744 -14.4098 -5.3950 26 1 3.5975 -15.4882 -3.3316 27 1 1.9634 -15.0720 -5.0744 28 6 3.2781 -10.6782 -1.8763 29 6 3.2812 -9.5489 -1.1106 30 1 -0.3633 1.0150 -0.1608 31 1 -0.3633 -0.6466 -0.7987 32 1 -0.3633 -0.3684 0.9594 33 1 4.4818 -0.1143 1.0205 34 1 4.4805 0.9443 -0.4105 35 1 6.5247 -1.9566 -1.4971 36 1 6.4376 -0.1788 -1.4996 37 1 7.6840 -1.0058 0.3625 38 1 4.8756 -2.6806 0.5044 39 1 3.4207 -3.2397 -1.9973 40 1 5.1358 -3.6260 -1.7194 41 1 1.7637 -4.4937 -0.7081 42 1 3.0419 -5.7780 -2.3498 43 1 4.7834 -5.9883 -2.0480 44 1 3.9654 -7.2433 -3.5054 45 1 3.9742 -9.2510 -4.8997 46 1 1.3671 -13.5445 -2.4637 47 1 3.0831 -11.6390 -1.4234 48 1 3.0888 -9.6169 -0.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346286775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:09 Heat of formation + Delta-G solvation = -78.807037 kcal Electronic energy + Delta-G solvation = -27264.547055 eV Core-core repulsion = 23285.527813 eV Total energy + Delta-G solvation = -3979.019242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.25164 -38.66222 -37.35423 -36.10764 -35.53955 -34.12355 -33.31323 -31.92186 -30.19677 -29.43714 -28.96984 -28.20764 -25.97443 -25.23837 -24.31402 -22.01557 -21.27432 -20.65181 -20.51429 -18.16333 -17.35856 -17.15220 -16.89062 -16.50636 -16.10326 -15.70927 -15.28430 -15.20855 -14.71069 -14.49248 -14.27473 -14.06179 -13.95058 -13.79398 -13.60537 -13.40260 -13.31699 -12.92336 -12.53790 -12.44785 -12.24240 -12.13543 -11.88921 -11.79457 -11.75704 -11.38245 -11.15933 -10.94682 -10.78042 -10.59762 -10.56446 -9.99423 -9.93407 -9.81584 -9.72520 -9.68069 -9.33440 -9.02267 -8.58701 -7.64469 -7.03045 -6.72294 -4.25520 2.70711 2.76736 2.76904 2.94875 3.08672 3.13703 3.20331 3.47248 3.80747 3.95141 4.13582 4.28863 4.49997 4.60257 4.62026 4.67974 4.86576 4.92091 5.02451 5.07354 5.15655 5.23544 5.33973 5.38939 5.44835 5.46474 5.51479 5.58877 5.61123 5.67317 5.76254 5.90687 6.04966 6.05621 6.22989 6.70094 6.74658 6.97598 7.10544 7.11309 7.18056 7.18879 7.46606 7.55740 7.70691 7.78759 7.81067 8.00710 8.20503 8.45641 8.65591 8.89916 8.98790 10.22106 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.001852 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.025910 B =15118.525823 C =15890.173981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.201 4.201 3 C -0.168 4.168 4 C 0.012 3.988 5 C 0.095 3.905 6 H 0.091 0.909 7 C 0.042 3.958 8 O -0.568 6.568 9 N -0.666 5.666 10 C 0.030 3.970 11 C 0.116 3.884 12 H 0.103 0.897 13 O -0.539 6.539 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.009 4.009 17 C -0.168 4.168 18 C -0.199 4.199 19 C 0.087 3.913 20 C -0.463 4.463 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.798 5.798 24 Si 0.907 3.093 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.275 1.275 28 C -0.133 4.133 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.381 0.619 38 H 0.353 0.647 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.370 0.630 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.280 0.720 47 H 0.126 0.874 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 23.032 2.782 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.201 4.201 3 C -0.168 4.168 4 C -0.025 4.025 5 C -0.016 4.016 6 H 0.109 0.891 7 C -0.037 4.037 8 O -0.373 6.373 9 N -0.298 5.298 10 C -0.099 4.099 11 C 0.056 3.944 12 H 0.120 0.880 13 O -0.342 6.342 14 C -0.038 4.038 15 O -0.232 6.232 16 C -0.052 4.052 17 C -0.187 4.187 18 C -0.219 4.219 19 C 0.085 3.915 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.143 4.143 23 N -0.424 5.424 24 Si 0.731 3.269 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.201 1.201 28 C -0.153 4.153 29 C -0.138 4.138 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.217 0.783 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.144 0.856 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.809 22.872 3.810 23.498 hybrid contribution 1.447 -0.761 -1.685 2.348 sum 5.256 22.112 2.124 22.827 Atomic orbital electron populations 1.18781 0.85066 1.02350 1.03019 1.22282 0.93831 1.02170 1.01819 1.22000 0.93278 1.00440 1.01118 1.18510 0.84829 0.97138 1.02048 1.21681 0.90489 0.90775 0.98613 0.89133 1.22966 0.95590 1.00395 0.84797 1.86455 1.25682 1.97481 1.27710 1.60342 1.56420 1.01187 1.11832 1.22616 1.00466 0.91948 0.94896 1.21812 0.86233 0.90157 0.96183 0.87955 1.86640 1.15984 1.93799 1.37823 1.23112 1.00344 0.85049 0.95338 1.85893 1.88538 1.12702 1.36112 1.18630 1.11183 0.85568 0.89804 1.20386 1.07668 0.97809 0.92858 1.20548 1.11439 0.92287 0.97594 1.17604 0.90015 0.91889 0.91981 1.19481 1.26907 0.96227 1.06712 0.90542 1.25885 0.93068 1.00997 0.94309 1.69844 1.15097 1.31667 1.25803 0.86291 0.79336 0.81454 0.79787 1.18506 1.19738 1.20080 1.20987 1.03847 0.96849 0.93587 1.19851 1.04962 0.90340 0.98626 0.90856 0.90404 0.90390 0.88836 0.89945 0.93320 0.92946 0.77124 0.82726 0.90486 0.94314 0.78334 0.92935 0.92696 0.89022 0.88797 0.90953 0.85647 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.07 16 2 C -0.20 -2.29 14.13 -37.12 -0.52 -2.82 16 3 C -0.17 -1.92 13.06 -37.12 -0.48 -2.40 16 4 C 0.01 0.10 5.11 -29.52 -0.15 -0.05 16 5 C 0.09 0.77 2.39 -67.71 -0.16 0.61 16 6 H 0.09 0.72 7.80 -51.93 -0.40 0.31 16 7 C 0.04 0.26 6.72 37.16 0.25 0.51 16 8 O -0.57 -3.70 12.24 -35.23 -0.43 -4.13 16 9 N -0.67 -6.68 5.90 -106.73 -0.63 -7.31 16 10 C 0.03 0.30 5.12 -3.83 -0.02 0.28 16 11 C 0.12 1.51 3.43 -26.73 -0.09 1.42 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 O -0.54 -7.95 13.25 -40.08 -0.53 -8.48 16 14 C 0.04 0.60 4.36 37.16 0.16 0.77 16 15 O -0.32 -6.62 10.09 -23.58 -0.24 -6.86 16 16 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 17 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 18 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 19 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 20 C -0.46 -12.35 9.04 -37.83 -0.34 -12.70 16 21 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 22 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 23 N -0.80 -20.82 10.96 55.54 0.61 -20.21 16 24 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 28 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 29 C -0.12 -2.94 9.92 -39.83 -0.40 -3.34 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.89 7.73 -51.93 -0.40 0.49 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.30 7.35 -51.93 -0.38 -0.09 16 36 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.38 0.98 9.12 45.56 0.42 1.40 16 38 H 0.35 3.70 7.94 -39.29 -0.31 3.39 16 39 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 40 H 0.04 0.34 7.36 -51.93 -0.38 -0.04 16 41 H 0.37 4.38 9.04 45.56 0.41 4.79 16 42 H 0.05 0.78 7.64 -51.93 -0.40 0.39 16 43 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 44 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 45 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 47 H 0.13 3.39 6.16 -52.49 -0.32 3.06 16 48 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -32.38 405.01 -9.43 -41.81 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.85 Total: 13.27 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -3.43 Total: -27.91 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: -0.02 Total: -27.52 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.20 Total: -19.47 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.38 -9.43 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346286775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.997 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds