Wall clock time and date at job start Tue Mar 31 2020 19:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47209 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47196 * 179.97438 * 134.50891 * 3 2 1 5 5 C 1.52997 * 109.47245 * 36.49665 * 4 3 2 6 6 H 1.08998 * 109.47187 * 54.99416 * 5 4 3 7 7 C 1.53000 * 109.47096 * 174.99590 * 5 4 3 8 8 O 1.42905 * 109.46976 * 55.00121 * 7 5 4 9 9 N 1.46901 * 109.47055 * 294.99879 * 5 4 3 10 10 C 1.46897 * 111.00237 * 155.00191 * 9 5 4 11 11 C 1.52995 * 109.47101 * 179.97438 * 10 9 5 12 12 H 1.09004 * 109.47161 * 304.99553 * 11 10 9 13 13 O 1.42898 * 109.47201 * 65.00242 * 11 10 9 14 14 C 1.53009 * 109.47033 * 184.99702 * 11 10 9 15 15 O 1.42898 * 109.47007 * 175.00002 * 14 11 10 16 16 C 1.35675 * 116.99955 * 180.02562 * 15 14 11 17 17 C 1.39315 * 119.81619 * 359.71560 * 16 15 14 18 18 C 1.36438 * 120.18082 * 179.76387 * 17 16 15 19 19 C 1.40827 * 119.81605 * 0.51926 * 18 17 16 20 20 C 1.41219 * 120.18207 * 179.71956 * 19 18 17 21 21 H 1.07996 * 119.99786 * 24.56650 * 20 19 18 22 22 C 1.39888 * 119.99677 * 204.56443 * 20 19 18 23 23 N 1.30879 * 120.00217 * 17.94490 * 22 20 19 24 24 Si 1.86805 * 119.99765 * 197.93913 * 22 20 19 25 25 H 1.48496 * 109.47007 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46915 * 120.00114 * 24 22 20 27 27 H 1.48501 * 109.47337 * 240.00484 * 24 22 20 28 28 C 1.40838 * 119.64010 * 359.73997 * 19 18 17 29 29 C 1.36435 * 119.81164 * 0.02562 * 28 19 18 30 30 H 1.09001 * 109.47102 * 9.00005 * 1 2 3 31 31 H 1.08997 * 109.46736 * 128.99409 * 1 2 3 32 32 H 1.08998 * 109.46768 * 248.99369 * 1 2 3 33 33 H 1.08996 * 109.47126 * 276.49145 * 4 3 2 34 34 H 1.09001 * 109.46862 * 156.49026 * 4 3 2 35 35 H 1.09002 * 109.47252 * 174.99736 * 7 5 4 36 36 H 1.08999 * 109.47435 * 294.99853 * 7 5 4 37 37 H 0.96695 * 113.99798 * 180.02562 * 8 7 5 38 38 H 1.00901 * 110.99545 * 278.95588 * 9 5 4 39 39 H 1.09000 * 109.47107 * 299.99954 * 10 9 5 40 40 H 1.09002 * 109.47263 * 59.99576 * 10 9 5 41 41 H 0.96694 * 114.00305 * 59.99630 * 13 11 10 42 42 H 1.08991 * 109.46960 * 295.00345 * 14 11 10 43 43 H 1.09002 * 109.46678 * 55.00316 * 14 11 10 44 44 H 1.07994 * 119.90621 * 0.03461 * 17 16 15 45 45 H 1.07999 * 120.08779 * 180.25989 * 18 17 16 46 46 H 0.97004 * 119.99969 * 179.97438 * 23 22 20 47 47 H 1.07994 * 120.09424 * 179.97438 * 28 19 18 48 48 H 1.07999 * 119.91010 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0016 -0.0005 5 6 4.6287 -1.1575 -0.8586 6 1 4.1936 -1.0906 -1.8557 7 6 6.1534 -1.0830 -0.9613 8 8 6.7183 -1.0535 0.3511 9 7 4.2413 -2.4324 -0.2400 10 6 4.1630 -3.5022 -1.2436 11 6 3.7585 -4.8114 -0.5629 12 1 4.4519 -5.0278 0.2498 13 8 2.4347 -4.6867 -0.0393 14 6 3.7978 -5.9504 -1.5838 15 8 3.5338 -7.1903 -0.9245 16 6 3.5325 -8.3085 -1.6929 17 6 3.7760 -8.2091 -3.0610 18 6 3.7812 -9.3293 -3.8400 19 6 3.5287 -10.5871 -3.2592 20 6 3.5263 -11.7509 -4.0592 21 1 4.0815 -11.7706 -4.9853 22 6 2.8049 -12.8781 -3.6520 23 7 1.8676 -12.7629 -2.7458 24 14 3.1791 -14.5476 -4.4018 25 1 4.2744 -14.4098 -5.3950 26 1 3.5975 -15.4882 -3.3316 27 1 1.9634 -15.0720 -5.0744 28 6 3.2781 -10.6782 -1.8763 29 6 3.2812 -9.5489 -1.1106 30 1 -0.3633 1.0150 -0.1608 31 1 -0.3633 -0.6466 -0.7987 32 1 -0.3633 -0.3684 0.9594 33 1 4.4818 -0.1143 1.0205 34 1 4.4805 0.9443 -0.4105 35 1 6.5247 -1.9566 -1.4971 36 1 6.4376 -0.1788 -1.4996 37 1 7.6840 -1.0058 0.3625 38 1 4.8756 -2.6806 0.5044 39 1 3.4207 -3.2397 -1.9973 40 1 5.1358 -3.6260 -1.7194 41 1 1.7637 -4.4937 -0.7081 42 1 3.0419 -5.7780 -2.3498 43 1 4.7834 -5.9883 -2.0480 44 1 3.9654 -7.2433 -3.5054 45 1 3.9742 -9.2510 -4.8997 46 1 1.3671 -13.5445 -2.4637 47 1 3.0831 -11.6390 -1.4234 48 1 3.0888 -9.6169 -0.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346286775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:08 Heat of formation + Delta-G solvation = -102.574569 kcal Electronic energy + Delta-G solvation = -27265.577692 eV Core-core repulsion = 23285.527813 eV Total energy + Delta-G solvation = -3980.049879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.68362 -39.60352 -38.59088 -37.56827 -36.22684 -35.18892 -34.90974 -32.75145 -31.81091 -31.03541 -30.44526 -29.00052 -26.85380 -26.57041 -25.65107 -23.28548 -22.47195 -22.34092 -21.68917 -19.26455 -18.89957 -18.47843 -17.77240 -17.49929 -17.27460 -17.03592 -16.39890 -16.14154 -15.87020 -15.72314 -15.43704 -15.27065 -15.05766 -14.79625 -14.63347 -14.29606 -14.16744 -14.08041 -13.94481 -13.92150 -13.52623 -13.37312 -13.17706 -12.99052 -12.80439 -12.61878 -12.48613 -12.42292 -12.38830 -11.93856 -11.71159 -11.58906 -11.23547 -11.00843 -10.96811 -10.88201 -10.49804 -10.45061 -9.57437 -9.28605 -8.93469 -8.60229 -6.23428 0.93668 1.01465 1.39626 1.50586 1.55048 1.89856 1.95789 2.22386 2.37499 2.71825 3.12006 3.45958 3.48616 3.56531 3.69385 3.88926 3.98470 4.04714 4.07890 4.17300 4.27696 4.30583 4.35013 4.41851 4.45035 4.54159 4.63554 4.74910 4.77876 4.84587 4.86361 4.90613 4.96416 5.02792 5.06590 5.08952 5.20809 5.23836 5.27787 5.57771 5.63474 5.87415 6.03972 6.05199 6.25357 6.40098 6.55976 6.79333 6.85525 6.88370 6.91052 6.94382 7.09470 8.36539 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.001852 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.025910 B =15118.525823 C =15890.173981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.227 4.227 3 C -0.190 4.190 4 C 0.013 3.987 5 C 0.095 3.905 6 H 0.094 0.906 7 C 0.048 3.952 8 O -0.585 6.585 9 N -0.680 5.680 10 C 0.043 3.957 11 C 0.124 3.876 12 H 0.093 0.907 13 O -0.561 6.561 14 C 0.031 3.969 15 O -0.332 6.332 16 C 0.000 4.000 17 C -0.164 4.164 18 C -0.207 4.207 19 C 0.054 3.946 20 C -0.498 4.498 21 H 0.077 0.923 22 C 0.031 3.969 23 N -0.832 5.832 24 Si 0.983 3.017 25 H -0.257 1.257 26 H -0.266 1.266 27 H -0.267 1.267 28 C -0.153 4.153 29 C -0.135 4.135 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.348 0.652 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.381 0.619 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.109 0.891 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 24.399 1.640 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.227 4.227 3 C -0.190 4.190 4 C -0.024 4.024 5 C -0.015 4.015 6 H 0.112 0.888 7 C -0.031 4.031 8 O -0.394 6.394 9 N -0.312 5.312 10 C -0.086 4.086 11 C 0.064 3.936 12 H 0.111 0.889 13 O -0.367 6.367 14 C -0.045 4.045 15 O -0.248 6.248 16 C -0.044 4.044 17 C -0.183 4.183 18 C -0.227 4.227 19 C 0.052 3.948 20 C -0.527 4.527 21 H 0.095 0.905 22 C -0.182 4.182 23 N -0.458 5.458 24 Si 0.804 3.196 25 H -0.181 1.181 26 H -0.191 1.191 27 H -0.192 1.192 28 C -0.172 4.172 29 C -0.154 4.154 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.248 0.752 38 H 0.168 0.832 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.229 0.771 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.147 0.853 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.659 24.279 2.665 24.865 hybrid contribution 1.175 -0.979 -1.244 1.972 sum 5.834 23.299 1.420 24.060 Atomic orbital electron populations 1.18940 0.83376 1.03657 1.03489 1.23170 0.95191 1.02388 1.01928 1.22744 0.94414 1.00570 1.01251 1.18606 0.83481 0.98474 1.01810 1.21705 0.92110 0.89379 0.98288 0.88767 1.22872 0.93917 1.01482 0.84830 1.86418 1.27363 1.97545 1.28065 1.60309 1.56894 1.01893 1.12072 1.22450 1.01413 0.90194 0.94563 1.21786 0.85502 0.90822 0.95490 0.88926 1.86605 1.17062 1.93917 1.39104 1.23489 1.01455 0.83228 0.96326 1.85885 1.88356 1.13661 1.36908 1.18698 1.09350 0.86082 0.90270 1.20693 1.06253 0.98889 0.92428 1.20809 1.11117 0.92212 0.98567 1.17967 0.91242 0.93220 0.92382 1.19732 1.28214 0.97485 1.07310 0.90488 1.26768 0.92267 1.04561 0.94633 1.69901 1.15839 1.33114 1.26996 0.85149 0.79301 0.76197 0.78972 1.18066 1.19053 1.19169 1.20900 1.05548 0.96849 0.93946 1.20013 1.05391 0.90945 0.99054 0.89125 0.89699 0.89996 0.89858 0.87971 0.92970 0.91041 0.75217 0.83226 0.89789 0.92629 0.77052 0.91836 0.91077 0.85260 0.87479 0.90219 0.87274 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.58 10.32 70.18 0.72 0.14 16 2 C -0.23 -5.03 14.13 31.13 0.44 -4.59 16 3 C -0.19 -4.19 13.06 31.12 0.41 -3.78 16 4 C 0.01 0.22 5.11 28.79 0.15 0.36 16 5 C 0.10 1.35 2.39 44.91 0.11 1.46 16 6 H 0.09 1.27 7.80 -2.39 -0.02 1.25 16 7 C 0.05 0.47 6.72 71.98 0.48 0.95 16 8 O -0.59 -6.47 12.24 -148.98 -1.82 -8.30 16 9 N -0.68 -12.57 5.90 -491.59 -2.90 -15.46 16 10 C 0.04 0.76 5.12 86.30 0.44 1.20 16 11 C 0.12 3.02 3.43 30.60 0.10 3.12 16 12 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 13 O -0.56 -15.95 13.25 -144.34 -1.91 -17.87 16 14 C 0.03 0.90 4.36 71.99 0.31 1.21 16 15 O -0.33 -13.45 10.09 -85.28 -0.86 -14.31 16 16 C 0.00 -0.01 6.71 22.79 0.15 0.15 16 17 C -0.16 -7.18 8.96 22.11 0.20 -6.98 16 18 C -0.21 -10.16 9.74 22.48 0.22 -9.94 16 19 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 20 C -0.50 -27.07 9.04 23.40 0.21 -26.86 16 21 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 22 C 0.03 1.61 5.13 85.23 0.44 2.05 16 23 N -0.83 -44.42 10.96 21.82 0.24 -44.18 16 24 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 27 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 28 C -0.15 -8.36 8.64 22.49 0.19 -8.16 16 29 C -0.14 -6.80 9.92 22.11 0.22 -6.58 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.53 7.73 -2.39 -0.02 1.51 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 0.48 7.35 -2.39 -0.02 0.46 16 36 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.40 1.22 9.12 -74.06 -0.68 0.55 16 38 H 0.35 6.89 7.94 -89.69 -0.71 6.18 16 39 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 40 H 0.06 0.80 7.36 -2.39 -0.02 0.79 16 41 H 0.38 8.55 9.04 -74.06 -0.67 7.88 16 42 H 0.06 1.70 7.64 -2.39 -0.02 1.68 16 43 H 0.07 1.84 7.66 -2.39 -0.02 1.82 16 44 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 45 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 46 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 47 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 48 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -70.83 405.01 -1.60 -72.43 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.06 Total: 40.46 kcal Atomic # 6 Polarization: -58.10 SS G_CDS: 4.68 Total: -53.41 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -2.66 Total: -59.65 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -4.60 Total: -40.47 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -70.83 -1.60 -72.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346286775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.146 kcal (2) G-P(sol) polarization free energy of solvation -70.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds